TCONS_00009546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009546
Unique NameTCONS_00009546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009546 ID=TCONS_00009546|Name=TCONS_00009546|organism=Clytia hemisphaerica|type=transcript|length=438bp
ataataaaagaaaaatttttgtcttgaaaatttttagatttcccgatttc
ccgattttcaaaaacggAAAACCCTcatttttacccccgtctttggtaaa
aaaatcAGACCTAGCAGAAAATTAAAGGCCTTAATTCCCTAAGTCTTAAG
ATAGAAAATTTCCTTTTAACCATAACTTCCTTTGTGTCAGTTTTCAGCTT
TTAAGTATATCGGGAACATACAGTTTAAACTCTGCAATTCGTTTTTTTAC
CATATATGGTCATACCTTTAATTCTAAGTTTCTTGAGTTAATCAAAAGCT
GAAAttaaaagtgaccccatttttaaGCACTACTCATCAAGATCTATCGT
TTGGAAATGTTGCTTTAAGCATAATACCAACTTcaaattttcgtttaaat
tttgatgacgtatttttcggtcacgtgatgaCTTTTTT
Run BLAST on NCBI

transcript from alignment at sc0000095:104788..105225

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009546 ID=TCONS_00009546|Name=TCONS_00009546|organism=Clytia hemisphaerica|type=transcript|length=438bp|location=Sequence derived from alignment at sc0000095:104788..105225 (Clytia hemisphaerica)
AAAAAAGtcatcacgtgaccgaaaaatacgtcatcaaaatttaaacgaaa
atttgAAGTTGGTATTATGCTTAAAGCAACATTTCCAAACGATAGATCTT
GATGAGTAGTGCttaaaaatggggtcacttttaaTTTCAGCTTTTGATTA
ACTCAAGAAACTTAGAATTAAAGGTATGACCATATATGGTAAAAAAACGA
ATTGCAGAGTTTAAACTGTATGTTCCCGATATACTTAAAAGCTGAAAACT
GACACAAAGGAAGTTATGGTTAAAAGGAAATTTTCTATCTTAAGACTTAG
GGAATTAAGGCCTTTAATTTTCTGCTAGGTCTgatttttttaccaaagac
gggggtaaaaatgAGGGTTTTccgtttttgaaaatcgggaaatcgggaaa
tctaaaaattttcaagacaaaaatttttcttttattat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005328XLOC_005328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009546-exon-sc0000095-1491911889:104788..105225TCONS_00009546-exon-sc0000095-1491911889:104788..105225Clytia hemisphaericaexon
TCONS_00009546-exon-sc0000095-1510915933:104788..105225TCONS_00009546-exon-sc0000095-1510915933:104788..105225Clytia hemisphaericaexon
TCONS_00009546-exon-sc0000095-1575043694:104788..105225TCONS_00009546-exon-sc0000095-1575043694:104788..105225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:104788..105225 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.309849	0.302152	0.75332	1.3348	0.417849	0	0.59754	0.18647	0.293471	0.192232	0	0	1.4784	1.27055	1.2561	2.36005	0.189422	0.921209	1.70417	2.9151	3.4281	3.37617	4.04606	7.69798	0.998014	4.99078	4.87946	5.6543	16.3806	12.4085
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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