TCONS_00009538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009538
Unique NameTCONS_00009538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009538 ID=TCONS_00009538|Name=TCONS_00009538|organism=Clytia hemisphaerica|type=transcript|length=952bp
ATTACgagttattttttaaagatcttGATTACAGCTACATACTTAAATTT
AGCAGCTGAAGGTGGAATTGTTCGGCTCCTCAAACCTCTACACCAAATCA
GAAAATGCTCGAATCCCATGGTAACTTGGTCACTTGTACCCCTTCACGGG
GAAAACGCTGTTTGGTTAAGCGTGTTTTATCAAAGAGATTCCCAAGATAT
AATCAAGGAGATCTGGAGAGACATTGGTGGCTTGACATCTTTTGGTCATC
AGAGGTTTAACCAATCATTGAAGGTTTTGTACAAGAAGAATCAAGAATTT
TCGGTCATTTTGACAAACATCGAGGACTCAATGAATCTTTATTTGACTTT
GATCTTCATGAACGCTGAAGGTGAAATAAAGGGTGGTCCGTTGTTATCCA
AAGCTAGCTTGAATGTGAAAGGTACAATGACTTACAAAATCCACTCAGAG
GGGTGTAATGATGATCCTAATACGTGTGGACATTCAGAAATTATTGTCAA
CGAGCAGAAATATGATGGCTTTGGAAGGGGAATGACTTTTGTTTTGGTGA
ATGCTAGTACAGGTGAATATCAGAATTGTAGATCGTTTGATTGGTATGCA
GATAGTACAGCATGCCAACGCTCACTACAATGGTTACAATCGTCTCCCAA
AGGAACAACTGTGTTTGGTGCTATTCGCGACGAAGGAACAGTCAAATATA
AtgatcaatgtgaaaaagcacTCCTCCTCATCGGTGGAAAGAAACCGTTC
CAGAGGCAATCAAGAGGCTCGTTTGCTATTGTTGGTTACCTTGGTGATCA
GAAGCCATTATGGATTGGACAAAACATGAGTGCTCCGGGGAAAGGGCCCA
CCATTTTGAGTGGACAAGTCCCTTTGATTTGTTAAATTCTATGTTTCTAA
TTCCGTCGTAAATTGGTAAATGGaaaaatagctatttataacccagctgg
ca
Run BLAST on NCBI

transcript from alignment at sc0000095:587277..593784-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009538 ID=TCONS_00009538|Name=TCONS_00009538|organism=Clytia hemisphaerica|type=transcript|length=6508bp|location=Sequence derived from alignment at sc0000095:587277..593784- (Clytia hemisphaerica)
ATTACGAGTTATTTTTTAAAGATCTTGATTACAGCTACATACTTAAATTT
AGCAGGTAAGAATATTCATAAATCGTTGAAATAATTAAAATGTTGCATAC
AAAGTTACCCCCGGAAAATCTGACCGCAAACTCGTTGTTGATTTTCGTCA
ATAATAGCTACTTGCGCTGAAGATAACTTTATCTAATAACGGGGGCGAAT
TTCGAAGGAAGTCAGCATCAAAATTTAGGGTTGTGTTCTTCTTTTATCTT
ATCGTTAAGTTTTCTGGGGAAGTGACGAAATTTTGGTTTGATTGTGGTTT
TCAAAAATTGTTTCTGTTTATTTCGATAAACTTCTTAAGGTATAAACTCC
CCGGTGAGTGACGGAAGATCATGATTTTCAAAACCTGTTGGGGTCAAAGC
CTTAACCCTTTCTCTATCGAAAACTGCCATTTTTGGCTCTTGGGAAATTC
CCCAAATCACCACAAGTGGCTATTACGCTGAACATACCTACATGCTAGCA
AGCGGTCCTGGTGACTTTAGTCAATGTGATTTTTGATTTTTTTCACCAGG
GAACTTGGAAATGTCATTTATTTGACAAAACCTTCTCAAATTTGGTCAAA
TTGACAGTCTTTTTGAGAAATTTGAAGAGAAAAAATCATTTCATAGAGAC
ACTCTTTAAGGAATCACATGCACAGTTTCACCTTGAAAAACTTACTTCTC
TTTTCTGAATCTTTGCCGGGGTGAATCTCAGAAACCGCTGTCTTTGTGGG
CCACCCCATAATGAGAAATTTTCAAAAAAGTGTTCAAATTTCTAAGTTAG
GCTAAGGACTTCGAAACTACATAAAAATTGTTTTTGAAACATTTGTACTT
CTTAAAATAATTTTCTCAGGGGGTTTAGGCATTAAGATCCTCGAGTTCTT
CTTTTATGGATCTCTTTACCTTACCCGGTTTTTGATAAGAACAAACTATA
TAAGAACATAAGCCTTTCAAAATATTAAGAACAAGTCAAGAACATTTAAA
GGCACCGTGGACTCTGAAACACCCAACTTCATAGGAAATTGCAAAACAAT
TCTTGCAAAATGTTGAAATTAAGAACATTTTTCGGCTAAAGCTTCAACAT
TTTTGGATGTTTTATCATTCTTTCAGATGAGTTCTGTAAGGTAGTTGTAG
GTGCCTTTATTTTAGAGTTTAGAAGCTGTCCAGGCTAGCGAACCGATTTG
ATCTTTTTCATCCGGATTTGGGATGAATAGTAAATGAGCTTTTGAGCGCA
CTGCTTAGCTTAAATCAAAACAACCTCACCAAAATTAACTGTCATTCATA
TACATAAACAATACACACATATTTAGAGCCCAATCGCTTTCGCTTTCGTT
TTCAAGTAAAAAGGCAACGTGGTTTTGAATGTTTTGCCTGAACGACAATG
CCAGATCGTCACATTCGCCATTGGTACTCACGTATTAAAAAAATGGCGTT
TAACAGTATTCGCGTGCGTTTCATGTTAGTGACAGGTCTTTTTGGATCAT
CTATGTACTCACTGGGAGATTTTTAGCTAAGAGAGATGAGGAAAAAAAAA
AAGAAAAAGAGGGAAAAAGTTAAACGCAATCGAAATTTAAAATCAAAAAT
TACAAAAGATTTGAAAAGATTTAATCTTGCTTACATTGCGTTGGCTTTGA
ACCTTAGTGGCGCATATCAATTTTTTTTAATATGTGCTTTTAACTTTTTT
TTACTAAGTACAGGTGCGACTAATGAGTGTACTCATTAGGATGATTTAAT
TCTTAGTCGCGTGCGATTGATGTTAAACGTACGCGACTACTGTTAAACGC
CACTTTTTTAATGCGTGAATACCAAGCTTAACTCCGTCTCTGGCTGAAGC
AAATTAATGCACCATCTTCAATAAGTAGACTAAAGTTCGGTGTCGGCATT
TTTATCCATTAAGACCATTCTCTCGCCTCTTTGCTTAACGCCATGCTAAT
TGTTTGTTTTGATCGAACAAAGTGTCGACGCCGAACAGTCTTTCGTAAAG
AAGGCGAGTTATTTCGCTTCAATTATCGCGGCTACTAGAGACCTATCTCT
ATCTAGTGTTTTCGTATTACTCCGAATAAACGCTTCCTCCTTTTATACGC
CCCTTCGAATAAACGCGCCTCCTTTATCGAAAAATTTGCAATGAACGCCT
CCTTCGAATAAACGCCCCTCAAAAAAATTCCACAAAAATTAACAGATGTT
GCTTTCTCTTTAGCTGAAGGTGGAATTGTTCGGCTCCTCAAACCTCTACA
CCAAATCAGAAAATGCTCGAATCCCATGGTAACTTGGTCACTTGTACCCC
TTCACGGGGAAAACGCTGTTTGGTTAAGCGTGTTTTATCAAAGAGATTCC
CAAGATATAATCAAGGAGATCTGGAGAGACATTGGTGGCTTGACATCTTT
TGGTCATCAGAGGTTTAACCAATCATTGAAGGTTTTGTACAAGAAGAATC
AAGAATTTTCGGTCATTTTGACAAACATCGAGGACTCAATGAATCTTTAT
TTGACTTTGATCTTCATGAACGCTGAAGGTGAAATAAAGGGTGGTCCGTT
GTTATCCAAAGCTAGCTTGAATGTGAAAGGTACCGTCATTAAATGCATTG
TTCAATGGGGCAGTGCTGTTTAGTTGCCCCTTTTTTTGTTGTTTGACATT
CCATTTTATACCCATACATTGGGGTGGACAGAAAGGGGGTCGACGGGAAT
TTTTTGTATTTTTTCCAGGGAGTTTTATTTGAGTTATTTGTTTACAAGTA
CTTGGAGGAACAAGGATTTACTTGTAAAAGGAAGAAATTTTGGCGGAAAG
AAAATTTGGCGGATTTGGCGGATTTGGCCAGAATCCGCCAAATTAAGTTC
CCGCCAAAATTTCTTTTTTCCGCCATNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCAAATTAAATTCCCGCCAAATTAAACTTTTTGAAAATATGATCTC
TTTTAAGGTGTTTTTGCATTTTTTTTGCTGTTTTTACGCCATTTTAAGGA
TAAAATTCTCAGCAAACGCCAAATTAAATTCCCGCCAAATTTAGTTTTTT
CGTCCATCCGCCAAATTAAATTCCCGCCAAAATTTCTTCCTTTAAGGTAT
TTACTTTTTCTAAGGGTGAAGTGATATGCTCGTTTATATTCCATGGGTTC
GAATAAAATTATTTCCAAGGACCTAATTCAAATTTCGAGGGTGTTAGATT
TTAATTTTCGTTCAGCAATAGAATCTTTTTTCCCAAGTTTTTTTTTGCTT
ATTTTGTCATTTTTTAAGAGGACACCCACACAATCTAATTTGTTTAGCTT
TAAAAGGTCCCTCCCCTCTGTATGTCTATTAAATGGGACAACCCGCATTT
GAATTAGTACAAAAGGTAAAGCTAAAACACGGATTTTAATATTTGATAGA
TTTCCTGTATGTGTGGGTTATCAAAAGAACATTTCAGACCAGGTGCGTTG
ATATAGGTGTTCTGGCATTCTCATGTAGCCTACGCGTAGGGGTCTCTGAA
AGACAAGGGGTGGCAAAAAGGTTTTATCATTTATCTTTTTTTCCACTTGC
AAAAGTAGCAGAAAAATATCTAAAATATTTCAAATCGTGTTTCAAATAAA
TCCAAGGTTTTTCTTAGGGGCGTAAAGTCATGATCAAGTTACCACGCTAC
TGCGACTCTGGTACATCAGATGGTGGCAATGCCGCAGTTTTTACTTCTTG
GTTATTTTCAGGTACAATGACTTACAAAATCCACTCAGAGGGGTGTAATG
ATGATCCTAATACGTGTGGACATTCAGAAATTATTGTCAACGAGCAGAAA
TATGATGGCTTTGGAAGGGGAATGACTTTTGTTTTGGTGAATGCTAGTAC
AGGTATATCCCAGCTGACATACAGCGTGGTTTCAACGTTTATCCGATGCT
TAAAACGTCCATATAACGCTAGATAAACGTTGACACAACCTTGTGTGCCA
GCTGGGACATTTTGAGAGAGGCGTTAATATTTTTTTTAACCATAAGATTC
AGGGAAAACACGTTATCACCCACCATAAAGCTCCACTTAGTAAAAAGACA
GTACAGCTTCAATAGCATTCAGAAGGCTGTATTTGATTTAGAGACGTTAA
ATATTTTCTCAGCTTCACTGAAGAGCCAACGCCCCCTTGTCATGAATGTT
AAGACCCGGGGGGGGGGCACTCATATGATCTGGCCTACGTCATGTGCCGC
GCTTAAGGGTGGGGTTTTTCAGCATCCCAAAATGCACTGTAAGGGTGTGT
TTCTGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTCTTTCACACAGATTTACAGCTGAGAAATATAGTGCA
CTATAAGGGTTGGGTAAATCAAGAGAAAATGCACTGAAAGGGTACCTTTT
CAGGCATATTGAATTGCACTGTAAGGGTACGATTTTGAAAAGCAGATTTT
GCGCGGCACATACCGTCGTTTCGAAATCGAGTGCCCCCCCCGGGTGTTAA
GAACATAGAAAGAACTGTAATGTACATTTTACACAGAAAACGAGTATAGT
TTAGATTGTTATTGCCATATTCGAAAAATATTGCTACAAATTATTCAAGG
TGATGTTTTGCGTTTGCCAAAAACGAGCTATTATGTATTGTTATTACCAT
AATCAAACGAAATATTTCAGGTGAATATCAGAATTGTAGATCGTTTGATT
GGTATGCAGATAGTACAGCATGCCAACGCTCACTACAATGGTTACAATCG
TCTCCCAAAGGGTAAGGATCAAAACACCATTATTGATATTGACATGCACC
CCCTTCTCACAGATCCGGTAGGATTCTTTCAGCCAGTGGGGGTAAAAACA
ACGGACCAAAACTCGATGGGGATTGATATTCCCATGTTTGATCCCCGTGA
AAGTTTATCCAATTAAAGTATATAAAAAGCATATCTTTGAATTTATTGCT
TTATTGTGCCAATGCTTCCATAAAATAGAGTCTACTTCTGACTGAATTGC
TTTCTGACGATTTATGATGACGCTTAGTTTATTACTCTACTGGGGAAGTA
GATTAGGAGCGCTTGACGAGTTCGCCATTTTAATAGGCAAGCACTAAAAA
TCCAAATAAAAAAAGTTACTCGGAGTTGAAAGATATAATTGAAAATAAGA
AGCCAACAACAGATTTTCAATAATCTTTTTTCAAAAACGAGAATCATTCA
GCCAATTCGATTGACTTCAAAATTTGCCATACTCACCAATTTTGCCAAAT
CCACAATCTCATTGTTAAAAGATCAAAGCTTCATGGCAAATTTGTACGTC
GCTACGCATCCTATTTTTACTTTCCTAAAACAACTAGAATCTCCTACAAT
TGAGAGCTACCATACTACCGTGCCATTTAAACGCCTCATCTAGTCTAGAT
CAAAAAGCTTTAGGTGTACCCCAGGCTATTTATATGACGAAAAAAGTTAT
GGTTATTAGAATTTACAGTTTTTGTAGAGTTTTTCTCGAGCTTATGGGAC
TTATTTTTAGGGTCTGCAATAAATTTAGGGCTGACGTTTACTCAAGGTTG
GTATAAAAAGGCCAACAATAAAACTGATTCTTTTGTCCATTTTGTCTCAA
AACGTGCAGAACAACTGTGTTTGGTGCTATTCGCGACGAAGGAACAGTCA
AATATAATGATCAATGTGAAAAAGCACTCCTCCTCATCGGTGGAAAGAAA
CCGTTCCAGAGGCAATCAAGAGGCTCGTTTGCTATTGTTGGTTACCTTGG
TGATCAGAAGCCATTATGGATTGGACAAAACATGAGTGCTCCGGGGAAAG
GGCCCACCATTTTGAGTGGACAAGTCCCTTTGATTTGTTAAATTCTATGT
TTCTAATTCCGTCGTAAATTGGTAAATGGAAAAATAGCTATTTATAACCC
AGCTGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005322XLOC_005322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009538-exon-sc0000095-1575043694:593730..593784TCONS_00009538-exon-sc0000095-1575043694:593730..593784Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1575043694:591206..591571TCONS_00009538-exon-sc0000095-1575043694:591206..591571Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1575043694:589833..589973TCONS_00009538-exon-sc0000095-1575043694:589833..589973Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1575043694:588424..588514TCONS_00009538-exon-sc0000095-1575043694:588424..588514Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1575043694:587277..587575TCONS_00009538-exon-sc0000095-1575043694:587277..587575Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1510915933:593730..593784TCONS_00009538-exon-sc0000095-1510915933:593730..593784Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1510915933:591206..591571TCONS_00009538-exon-sc0000095-1510915933:591206..591571Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1510915933:589833..589973TCONS_00009538-exon-sc0000095-1510915933:589833..589973Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1510915933:588424..588514TCONS_00009538-exon-sc0000095-1510915933:588424..588514Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1510915933:587277..587575TCONS_00009538-exon-sc0000095-1510915933:587277..587575Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1491911889:593730..593784TCONS_00009538-exon-sc0000095-1491911889:593730..593784Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1491911889:591206..591571TCONS_00009538-exon-sc0000095-1491911889:591206..591571Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1491911889:589833..589973TCONS_00009538-exon-sc0000095-1491911889:589833..589973Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1491911889:588424..588514TCONS_00009538-exon-sc0000095-1491911889:588424..588514Clytia hemisphaericaexon
TCONS_00009538-exon-sc0000095-1491911889:587277..587575TCONS_00009538-exon-sc0000095-1491911889:587277..587575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:587277..593784 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.103845	0	0	0	0	0	0	0	0	1.64333	1.05426	0	3.1702	0.415565	0	0.00125558	3.63136	1.62908	2.48556	3.95865	3.61176	3.55588	6.03705	0	0	10.7425	14.9865
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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