TCONS_00009537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009537
Unique NameTCONS_00009537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009537 ID=TCONS_00009537|Name=TCONS_00009537|organism=Clytia hemisphaerica|type=transcript|length=874bp
ATTACAGCTACATACTTAAATTTAGCAGCTGAAGGTGGAATTGTTCGGCT
CCTCAAACCTCTACACCAAATCAGAAAATGCTCGAATCCCATGGTAACTT
GGTCACTTGTACCCCTTCACGGGGAAAACGCTGTTTGGTTAAGCGTGTTT
TATCAAAGAGATTCCCAAGATATAATCAAGGAGATCTGGAGAGACATTGG
TGGCTTGACATCTTTTGGTCATCAGAGGTTTAACCAATCATTGAAGGTTT
TGTACAAGAAGAATCAAGAATTTTCGGTCATTTTGACAAACATCGAGGAC
TCAATGAATCTTTATTTGACTTTGATCTTCATGAACGCTGAAGGTACAAT
GACTTACAAAATCCACTCAGAGGGGTGTAATGATGATCCTAATACGTGTG
GACATTCAGAAATTATTGTCAACGAGCAGAAATATGATGGCTTTGGAAGG
GGAATGACTTTTGTTTTGGTGAATGCTAGTACAGGTGAATATCAGAATTG
TAGATCGTTTGATTGGTATGCAGATAGTACAGCATGCCAACGCTCACTAC
AATGGTTACAATCGTCTCCCAAAGGAACAACTGTGTTTGGTGCTATTCGC
GACGAAGGAACAGTCAAATATAAtgatcaatgtgaaaaagcacTCCTCCT
CATCGGTGGAAAGAAACCGTTCCAGAGGCAATCAAGAGGCTCGTTTGCTA
TTGTTGGTTACCTTGGTGATCAGAAGCCATTATGGATTGGACAAAACATG
AGTGCTCCGGGGAAAGGGCCCACCATTTTGAGTGGACAAGTCCCTTTGAT
TTGTTAAATTCTATGTTTCTAATTCCGTCGTAAATTGGTAAATGGaaaaa
tagctatttataacccagctggca
Run BLAST on NCBI

transcript from alignment at sc0000095:587277..593757-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009537 ID=TCONS_00009537|Name=TCONS_00009537|organism=Clytia hemisphaerica|type=transcript|length=6481bp|location=Sequence derived from alignment at sc0000095:587277..593757- (Clytia hemisphaerica)
ATTACAGCTACATACTTAAATTTAGCAGGTAAGAATATTCATAAATCGTT
GAAATAATTAAAATGTTGCATACAAAGTTACCCCCGGAAAATCTGACCGC
AAACTCGTTGTTGATTTTCGTCAATAATAGCTACTTGCGCTGAAGATAAC
TTTATCTAATAACGGGGGCGAATTTCGAAGGAAGTCAGCATCAAAATTTA
GGGTTGTGTTCTTCTTTTATCTTATCGTTAAGTTTTCTGGGGAAGTGACG
AAATTTTGGTTTGATTGTGGTTTTCAAAAATTGTTTCTGTTTATTTCGAT
AAACTTCTTAAGGTATAAACTCCCCGGTGAGTGACGGAAGATCATGATTT
TCAAAACCTGTTGGGGTCAAAGCCTTAACCCTTTCTCTATCGAAAACTGC
CATTTTTGGCTCTTGGGAAATTCCCCAAATCACCACAAGTGGCTATTACG
CTGAACATACCTACATGCTAGCAAGCGGTCCTGGTGACTTTAGTCAATGT
GATTTTTGATTTTTTTCACCAGGGAACTTGGAAATGTCATTTATTTGACA
AAACCTTCTCAAATTTGGTCAAATTGACAGTCTTTTTGAGAAATTTGAAG
AGAAAAAATCATTTCATAGAGACACTCTTTAAGGAATCACATGCACAGTT
TCACCTTGAAAAACTTACTTCTCTTTTCTGAATCTTTGCCGGGGTGAATC
TCAGAAACCGCTGTCTTTGTGGGCCACCCCATAATGAGAAATTTTCAAAA
AAGTGTTCAAATTTCTAAGTTAGGCTAAGGACTTCGAAACTACATAAAAA
TTGTTTTTGAAACATTTGTACTTCTTAAAATAATTTTCTCAGGGGGTTTA
GGCATTAAGATCCTCGAGTTCTTCTTTTATGGATCTCTTTACCTTACCCG
GTTTTTGATAAGAACAAACTATATAAGAACATAAGCCTTTCAAAATATTA
AGAACAAGTCAAGAACATTTAAAGGCACCGTGGACTCTGAAACACCCAAC
TTCATAGGAAATTGCAAAACAATTCTTGCAAAATGTTGAAATTAAGAACA
TTTTTCGGCTAAAGCTTCAACATTTTTGGATGTTTTATCATTCTTTCAGA
TGAGTTCTGTAAGGTAGTTGTAGGTGCCTTTATTTTAGAGTTTAGAAGCT
GTCCAGGCTAGCGAACCGATTTGATCTTTTTCATCCGGATTTGGGATGAA
TAGTAAATGAGCTTTTGAGCGCACTGCTTAGCTTAAATCAAAACAACCTC
ACCAAAATTAACTGTCATTCATATACATAAACAATACACACATATTTAGA
GCCCAATCGCTTTCGCTTTCGTTTTCAAGTAAAAAGGCAACGTGGTTTTG
AATGTTTTGCCTGAACGACAATGCCAGATCGTCACATTCGCCATTGGTAC
TCACGTATTAAAAAAATGGCGTTTAACAGTATTCGCGTGCGTTTCATGTT
AGTGACAGGTCTTTTTGGATCATCTATGTACTCACTGGGAGATTTTTAGC
TAAGAGAGATGAGGAAAAAAAAAAAGAAAAAGAGGGAAAAAGTTAAACGC
AATCGAAATTTAAAATCAAAAATTACAAAAGATTTGAAAAGATTTAATCT
TGCTTACATTGCGTTGGCTTTGAACCTTAGTGGCGCATATCAATTTTTTT
TAATATGTGCTTTTAACTTTTTTTTACTAAGTACAGGTGCGACTAATGAG
TGTACTCATTAGGATGATTTAATTCTTAGTCGCGTGCGATTGATGTTAAA
CGTACGCGACTACTGTTAAACGCCACTTTTTTAATGCGTGAATACCAAGC
TTAACTCCGTCTCTGGCTGAAGCAAATTAATGCACCATCTTCAATAAGTA
GACTAAAGTTCGGTGTCGGCATTTTTATCCATTAAGACCATTCTCTCGCC
TCTTTGCTTAACGCCATGCTAATTGTTTGTTTTGATCGAACAAAGTGTCG
ACGCCGAACAGTCTTTCGTAAAGAAGGCGAGTTATTTCGCTTCAATTATC
GCGGCTACTAGAGACCTATCTCTATCTAGTGTTTTCGTATTACTCCGAAT
AAACGCTTCCTCCTTTTATACGCCCCTTCGAATAAACGCGCCTCCTTTAT
CGAAAAATTTGCAATGAACGCCTCCTTCGAATAAACGCCCCTCAAAAAAA
TTCCACAAAAATTAACAGATGTTGCTTTCTCTTTAGCTGAAGGTGGAATT
GTTCGGCTCCTCAAACCTCTACACCAAATCAGAAAATGCTCGAATCCCAT
GGTAACTTGGTCACTTGTACCCCTTCACGGGGAAAACGCTGTTTGGTTAA
GCGTGTTTTATCAAAGAGATTCCCAAGATATAATCAAGGAGATCTGGAGA
GACATTGGTGGCTTGACATCTTTTGGTCATCAGAGGTTTAACCAATCATT
GAAGGTTTTGTACAAGAAGAATCAAGAATTTTCGGTCATTTTGACAAACA
TCGAGGACTCAATGAATCTTTATTTGACTTTGATCTTCATGAACGCTGAA
GGTGAAATAAAGGGTGGTCCGTTGTTATCCAAAGCTAGCTTGAATGTGAA
AGGTACCGTCATTAAATGCATTGTTCAATGGGGCAGTGCTGTTTAGTTGC
CCCTTTTTTTGTTGTTTGACATTCCATTTTATACCCATACATTGGGGTGG
ACAGAAAGGGGGTCGACGGGAATTTTTTGTATTTTTTCCAGGGAGTTTTA
TTTGAGTTATTTGTTTACAAGTACTTGGAGGAACAAGGATTTACTTGTAA
AAGGAAGAAATTTTGGCGGAAAGAAAATTTGGCGGATTTGGCGGATTTGG
CCAGAATCCGCCAAATTAAGTTCCCGCCAAAATTTCTTTTTTCCGCCATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTAAATTCCCGCCAAATT
AAACTTTTTGAAAATATGATCTCTTTTAAGGTGTTTTTGCATTTTTTTTG
CTGTTTTTACGCCATTTTAAGGATAAAATTCTCAGCAAACGCCAAATTAA
ATTCCCGCCAAATTTAGTTTTTTCGTCCATCCGCCAAATTAAATTCCCGC
CAAAATTTCTTCCTTTAAGGTATTTACTTTTTCTAAGGGTGAAGTGATAT
GCTCGTTTATATTCCATGGGTTCGAATAAAATTATTTCCAAGGACCTAAT
TCAAATTTCGAGGGTGTTAGATTTTAATTTTCGTTCAGCAATAGAATCTT
TTTTCCCAAGTTTTTTTTTGCTTATTTTGTCATTTTTTAAGAGGACACCC
ACACAATCTAATTTGTTTAGCTTTAAAAGGTCCCTCCCCTCTGTATGTCT
ATTAAATGGGACAACCCGCATTTGAATTAGTACAAAAGGTAAAGCTAAAA
CACGGATTTTAATATTTGATAGATTTCCTGTATGTGTGGGTTATCAAAAG
AACATTTCAGACCAGGTGCGTTGATATAGGTGTTCTGGCATTCTCATGTA
GCCTACGCGTAGGGGTCTCTGAAAGACAAGGGGTGGCAAAAAGGTTTTAT
CATTTATCTTTTTTTCCACTTGCAAAAGTAGCAGAAAAATATCTAAAATA
TTTCAAATCGTGTTTCAAATAAATCCAAGGTTTTTCTTAGGGGCGTAAAG
TCATGATCAAGTTACCACGCTACTGCGACTCTGGTACATCAGATGGTGGC
AATGCCGCAGTTTTTACTTCTTGGTTATTTTCAGGTACAATGACTTACAA
AATCCACTCAGAGGGGTGTAATGATGATCCTAATACGTGTGGACATTCAG
AAATTATTGTCAACGAGCAGAAATATGATGGCTTTGGAAGGGGAATGACT
TTTGTTTTGGTGAATGCTAGTACAGGTATATCCCAGCTGACATACAGCGT
GGTTTCAACGTTTATCCGATGCTTAAAACGTCCATATAACGCTAGATAAA
CGTTGACACAACCTTGTGTGCCAGCTGGGACATTTTGAGAGAGGCGTTAA
TATTTTTTTTAACCATAAGATTCAGGGAAAACACGTTATCACCCACCATA
AAGCTCCACTTAGTAAAAAGACAGTACAGCTTCAATAGCATTCAGAAGGC
TGTATTTGATTTAGAGACGTTAAATATTTTCTCAGCTTCACTGAAGAGCC
AACGCCCCCTTGTCATGAATGTTAAGACCCGGGGGGGGGGCACTCATATG
ATCTGGCCTACGTCATGTGCCGCGCTTAAGGGTGGGGTTTTTCAGCATCC
CAAAATGCACTGTAAGGGTGTGTTTCTGTGAGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTCACACAGAT
TTACAGCTGAGAAATATAGTGCACTATAAGGGTTGGGTAAATCAAGAGAA
AATGCACTGAAAGGGTACCTTTTCAGGCATATTGAATTGCACTGTAAGGG
TACGATTTTGAAAAGCAGATTTTGCGCGGCACATACCGTCGTTTCGAAAT
CGAGTGCCCCCCCCGGGTGTTAAGAACATAGAAAGAACTGTAATGTACAT
TTTACACAGAAAACGAGTATAGTTTAGATTGTTATTGCCATATTCGAAAA
ATATTGCTACAAATTATTCAAGGTGATGTTTTGCGTTTGCCAAAAACGAG
CTATTATGTATTGTTATTACCATAATCAAACGAAATATTTCAGGTGAATA
TCAGAATTGTAGATCGTTTGATTGGTATGCAGATAGTACAGCATGCCAAC
GCTCACTACAATGGTTACAATCGTCTCCCAAAGGGTAAGGATCAAAACAC
CATTATTGATATTGACATGCACCCCCTTCTCACAGATCCGGTAGGATTCT
TTCAGCCAGTGGGGGTAAAAACAACGGACCAAAACTCGATGGGGATTGAT
ATTCCCATGTTTGATCCCCGTGAAAGTTTATCCAATTAAAGTATATAAAA
AGCATATCTTTGAATTTATTGCTTTATTGTGCCAATGCTTCCATAAAATA
GAGTCTACTTCTGACTGAATTGCTTTCTGACGATTTATGATGACGCTTAG
TTTATTACTCTACTGGGGAAGTAGATTAGGAGCGCTTGACGAGTTCGCCA
TTTTAATAGGCAAGCACTAAAAATCCAAATAAAAAAAGTTACTCGGAGTT
GAAAGATATAATTGAAAATAAGAAGCCAACAACAGATTTTCAATAATCTT
TTTTCAAAAACGAGAATCATTCAGCCAATTCGATTGACTTCAAAATTTGC
CATACTCACCAATTTTGCCAAATCCACAATCTCATTGTTAAAAGATCAAA
GCTTCATGGCAAATTTGTACGTCGCTACGCATCCTATTTTTACTTTCCTA
AAACAACTAGAATCTCCTACAATTGAGAGCTACCATACTACCGTGCCATT
TAAACGCCTCATCTAGTCTAGATCAAAAAGCTTTAGGTGTACCCCAGGCT
ATTTATATGACGAAAAAAGTTATGGTTATTAGAATTTACAGTTTTTGTAG
AGTTTTTCTCGAGCTTATGGGACTTATTTTTAGGGTCTGCAATAAATTTA
GGGCTGACGTTTACTCAAGGTTGGTATAAAAAGGCCAACAATAAAACTGA
TTCTTTTGTCCATTTTGTCTCAAAACGTGCAGAACAACTGTGTTTGGTGC
TATTCGCGACGAAGGAACAGTCAAATATAATGATCAATGTGAAAAAGCAC
TCCTCCTCATCGGTGGAAAGAAACCGTTCCAGAGGCAATCAAGAGGCTCG
TTTGCTATTGTTGGTTACCTTGGTGATCAGAAGCCATTATGGATTGGACA
AAACATGAGTGCTCCGGGGAAAGGGCCCACCATTTTGAGTGGACAAGTCC
CTTTGATTTGTTAAATTCTATGTTTCTAATTCCGTCGTAAATTGGTAAAT
GGAAAAATAGCTATTTATAACCCAGCTGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005322XLOC_005322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009537-exon-sc0000095-1575043694:593730..593757TCONS_00009537-exon-sc0000095-1575043694:593730..593757Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1575043694:591257..591571TCONS_00009537-exon-sc0000095-1575043694:591257..591571Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1575043694:589833..589973TCONS_00009537-exon-sc0000095-1575043694:589833..589973Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1575043694:588424..588514TCONS_00009537-exon-sc0000095-1575043694:588424..588514Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1575043694:587277..587575TCONS_00009537-exon-sc0000095-1575043694:587277..587575Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1510915933:593730..593757TCONS_00009537-exon-sc0000095-1510915933:593730..593757Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1510915933:591257..591571TCONS_00009537-exon-sc0000095-1510915933:591257..591571Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1510915933:589833..589973TCONS_00009537-exon-sc0000095-1510915933:589833..589973Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1510915933:588424..588514TCONS_00009537-exon-sc0000095-1510915933:588424..588514Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1510915933:587277..587575TCONS_00009537-exon-sc0000095-1510915933:587277..587575Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1491911889:593730..593757TCONS_00009537-exon-sc0000095-1491911889:593730..593757Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1491911889:591257..591571TCONS_00009537-exon-sc0000095-1491911889:591257..591571Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1491911889:589833..589973TCONS_00009537-exon-sc0000095-1491911889:589833..589973Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1491911889:588424..588514TCONS_00009537-exon-sc0000095-1491911889:588424..588514Clytia hemisphaericaexon
TCONS_00009537-exon-sc0000095-1491911889:587277..587575TCONS_00009537-exon-sc0000095-1491911889:587277..587575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:587277..593757 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.14296	0	0	0	0	0	0	0.0521514	0	0	0	0	0.076498	0	0	0	0	0	0	0	0	0.99519	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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