TCONS_00009536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009536
Unique NameTCONS_00009536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009536 ID=TCONS_00009536|Name=TCONS_00009536|organism=Clytia hemisphaerica|type=transcript|length=632bp
CCCGCATTTGAATTAGTACAAAAGGTAAAGCTAAAACACGGATTTTAATA
TTTGATAGATTTCCTGTATGTGTGGGTTATCAAAAGAACATTTCAGACCA
GGTACAATGACTTACAAAATCCACTCAGAGGGGTGTAATGATGATCCTAA
TACGTGTGGACATTCAGAAATTATTGTCAACGAGCAGAAATATGATGGCT
TTGGAAGGGGAATGACTTTTGTTTTGGTGAATGCTAGTACAGGTGAATAT
CAGAATTGTAGATCGTTTGATTGGTATGCAGATAGTACAGCATGCCAACG
CTCACTACAATGGTTACAATCGTCTCCCAAAGGAACAACTGTGTTTGGTG
CTATTCGCGACGAAGGAACAGTCAAATATAAtgatcaatgtgaaaaagca
cTCCTCCTCATCGGTGGAAAGAAACCGTTCCAGAGGCAATCAAGAGGCTC
GTTTGCTATTGTTGGTTACCTTGGTGATCAGAAGCCATTATGGATTGGAC
AAAACATGAGTGCTCCGGGGAAAGGGCCCACCATTTTGAGTGGACAAGTC
CCTTTGATTTGTTAAATTCTATGTTTCTAATTCCGTCGTAAATTGGTAAA
TGGaaaaatagctatttataacccagctggca
Run BLAST on NCBI

transcript from alignment at sc0000095:587277..590343-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009536 ID=TCONS_00009536|Name=TCONS_00009536|organism=Clytia hemisphaerica|type=transcript|length=3067bp|location=Sequence derived from alignment at sc0000095:587277..590343- (Clytia hemisphaerica)
CCCGCATTTGAATTAGTACAAAAGGTAAAGCTAAAACACGGATTTTAATA
TTTGATAGATTTCCTGTATGTGTGGGTTATCAAAAGAACATTTCAGACCA
GGTGCGTTGATATAGGTGTTCTGGCATTCTCATGTAGCCTACGCGTAGGG
GTCTCTGAAAGACAAGGGGTGGCAAAAAGGTTTTATCATTTATCTTTTTT
TCCACTTGCAAAAGTAGCAGAAAAATATCTAAAATATTTCAAATCGTGTT
TCAAATAAATCCAAGGTTTTTCTTAGGGGCGTAAAGTCATGATCAAGTTA
CCACGCTACTGCGACTCTGGTACATCAGATGGTGGCAATGCCGCAGTTTT
TACTTCTTGGTTATTTTCAGGTACAATGACTTACAAAATCCACTCAGAGG
GGTGTAATGATGATCCTAATACGTGTGGACATTCAGAAATTATTGTCAAC
GAGCAGAAATATGATGGCTTTGGAAGGGGAATGACTTTTGTTTTGGTGAA
TGCTAGTACAGGTATATCCCAGCTGACATACAGCGTGGTTTCAACGTTTA
TCCGATGCTTAAAACGTCCATATAACGCTAGATAAACGTTGACACAACCT
TGTGTGCCAGCTGGGACATTTTGAGAGAGGCGTTAATATTTTTTTTAACC
ATAAGATTCAGGGAAAACACGTTATCACCCACCATAAAGCTCCACTTAGT
AAAAAGACAGTACAGCTTCAATAGCATTCAGAAGGCTGTATTTGATTTAG
AGACGTTAAATATTTTCTCAGCTTCACTGAAGAGCCAACGCCCCCTTGTC
ATGAATGTTAAGACCCGGGGGGGGGGCACTCATATGATCTGGCCTACGTC
ATGTGCCGCGCTTAAGGGTGGGGTTTTTCAGCATCCCAAAATGCACTGTA
AGGGTGTGTTTCTGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTCTTTCACACAGATTTACAGCTGAGAAA
TATAGTGCACTATAAGGGTTGGGTAAATCAAGAGAAAATGCACTGAAAGG
GTACCTTTTCAGGCATATTGAATTGCACTGTAAGGGTACGATTTTGAAAA
GCAGATTTTGCGCGGCACATACCGTCGTTTCGAAATCGAGTGCCCCCCCC
GGGTGTTAAGAACATAGAAAGAACTGTAATGTACATTTTACACAGAAAAC
GAGTATAGTTTAGATTGTTATTGCCATATTCGAAAAATATTGCTACAAAT
TATTCAAGGTGATGTTTTGCGTTTGCCAAAAACGAGCTATTATGTATTGT
TATTACCATAATCAAACGAAATATTTCAGGTGAATATCAGAATTGTAGAT
CGTTTGATTGGTATGCAGATAGTACAGCATGCCAACGCTCACTACAATGG
TTACAATCGTCTCCCAAAGGGTAAGGATCAAAACACCATTATTGATATTG
ACATGCACCCCCTTCTCACAGATCCGGTAGGATTCTTTCAGCCAGTGGGG
GTAAAAACAACGGACCAAAACTCGATGGGGATTGATATTCCCATGTTTGA
TCCCCGTGAAAGTTTATCCAATTAAAGTATATAAAAAGCATATCTTTGAA
TTTATTGCTTTATTGTGCCAATGCTTCCATAAAATAGAGTCTACTTCTGA
CTGAATTGCTTTCTGACGATTTATGATGACGCTTAGTTTATTACTCTACT
GGGGAAGTAGATTAGGAGCGCTTGACGAGTTCGCCATTTTAATAGGCAAG
CACTAAAAATCCAAATAAAAAAAGTTACTCGGAGTTGAAAGATATAATTG
AAAATAAGAAGCCAACAACAGATTTTCAATAATCTTTTTTCAAAAACGAG
AATCATTCAGCCAATTCGATTGACTTCAAAATTTGCCATACTCACCAATT
TTGCCAAATCCACAATCTCATTGTTAAAAGATCAAAGCTTCATGGCAAAT
TTGTACGTCGCTACGCATCCTATTTTTACTTTCCTAAAACAACTAGAATC
TCCTACAATTGAGAGCTACCATACTACCGTGCCATTTAAACGCCTCATCT
AGTCTAGATCAAAAAGCTTTAGGTGTACCCCAGGCTATTTATATGACGAA
AAAAGTTATGGTTATTAGAATTTACAGTTTTTGTAGAGTTTTTCTCGAGC
TTATGGGACTTATTTTTAGGGTCTGCAATAAATTTAGGGCTGACGTTTAC
TCAAGGTTGGTATAAAAAGGCCAACAATAAAACTGATTCTTTTGTCCATT
TTGTCTCAAAACGTGCAGAACAACTGTGTTTGGTGCTATTCGCGACGAAG
GAACAGTCAAATATAATGATCAATGTGAAAAAGCACTCCTCCTCATCGGT
GGAAAGAAACCGTTCCAGAGGCAATCAAGAGGCTCGTTTGCTATTGTTGG
TTACCTTGGTGATCAGAAGCCATTATGGATTGGACAAAACATGAGTGCTC
CGGGGAAAGGGCCCACCATTTTGAGTGGACAAGTCCCTTTGATTTGTTAA
ATTCTATGTTTCTAATTCCGTCGTAAATTGGTAAATGGAAAAATAGCTAT
TTATAACCCAGCTGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005322XLOC_005322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009536-exon-sc0000095-1575043694:590243..590343TCONS_00009536-exon-sc0000095-1575043694:590243..590343Clytia hemisphaericaexon
TCONS_00009536-exon-sc0000095-1575043694:589833..589973TCONS_00009536-exon-sc0000095-1575043694:589833..589973Clytia hemisphaericaexon
TCONS_00009536-exon-sc0000095-1575043694:588424..588514TCONS_00009536-exon-sc0000095-1575043694:588424..588514Clytia hemisphaericaexon
TCONS_00009536-exon-sc0000095-1575043694:587277..587575TCONS_00009536-exon-sc0000095-1575043694:587277..587575Clytia hemisphaericaexon
TCONS_00009536-exon-sc0000095-1510915933:590243..590343TCONS_00009536-exon-sc0000095-1510915933:590243..590343Clytia hemisphaericaexon
TCONS_00009536-exon-sc0000095-1510915933:589833..589973TCONS_00009536-exon-sc0000095-1510915933:589833..589973Clytia hemisphaericaexon
TCONS_00009536-exon-sc0000095-1510915933:588424..588514TCONS_00009536-exon-sc0000095-1510915933:588424..588514Clytia hemisphaericaexon
TCONS_00009536-exon-sc0000095-1510915933:587277..587575TCONS_00009536-exon-sc0000095-1510915933:587277..587575Clytia hemisphaericaexon
TCONS_00009536-exon-sc0000095-1491911889:590243..590343TCONS_00009536-exon-sc0000095-1491911889:590243..590343Clytia hemisphaericaexon
TCONS_00009536-exon-sc0000095-1491911889:589833..589973TCONS_00009536-exon-sc0000095-1491911889:589833..589973Clytia hemisphaericaexon
TCONS_00009536-exon-sc0000095-1491911889:588424..588514TCONS_00009536-exon-sc0000095-1491911889:588424..588514Clytia hemisphaericaexon
TCONS_00009536-exon-sc0000095-1491911889:587277..587575TCONS_00009536-exon-sc0000095-1491911889:587277..587575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:587277..590343 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.838717	0.838498	1.32949	0.713354	0.452423	0.625644	0.175196	0.255841	0.512564	1.10758	0.283242	0.260622	0.517935	1.43249	0.00220843	2.22501	1.23112	2.4716	5.19866	4.48875	0.135069	0	0	0	1.18499	0.675082	2.82222	2.33794	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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