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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009527 ID=TCONS_00009527|Name=TCONS_00009527|organism=Clytia hemisphaerica|type=transcript|length=1012bp
tCTGTGAGTATTAGCGAGTGAGTTTAGGATCAAATATTCCAAAGTAAAAG
TTGCAAAGGACGAATTGAGGAAAACGAACTGGTTAAAAGgttttcaacTC
GCGGAAGAAGTAATCTGAAACATAATGTTGACTTTTCATCTCACCGTCAT
TCTAAGCGCTGTTGTATTTCTCTCAAATCAACCTAACCAAGGCAGTTGTT
TCGATTCACTCAGCCATCTTGAATCGTCTTTCACAACTACTATAAATCAG
CTATGTGTGGAATATGCTTCAGCTAGTTGCCACAAACAGCATGGTGAAAT
GTCACGAAATCTATTCTACGCATGTTGTCAAGACAAGTACCACGAGTGTT
CGCTTGATGGTATGTCAAGCCGAAACGGGCTTGGGGGTGCACATTGTCCG
ATAAGCTTGGTCCCTGTGACCTTTTGCTATCATGAAAAAGATTGTCAAGA
AGTCTATTTGGAGGTTGAAGCTTGCTCTAAATAAAGGGACTTTATGATGC
ATGTTTGGATGCATATTACTTTAGGCGACGCGTACAAACATTCGCGAGTa
gaaacttttgcgattttcgcgaaagtaaatgtctttagaaattctaggaa
gggccctttgcgaaagtttatactcgcaaaaaaactttctacaaaataga
aaatctgtaaaactacaaactttgaataaaatgtatcTTTTGTGGCACTT
TTttgcctgctaaaagactaataagacAAAGAACAagtgtttcaagccaa
tccaagaagtattagtCCCTCTAAGCTATTTTTTCATgttaaaattctca
attttacgtcatgattcgcgaaagtttatgctcgcgaaaaatatttttcc
gttaaatttgcgaaagtaaatgtcgtgaatttcgcgatttttcgtcctcg
cgaaagtttctgctcgctaAAGTATCTTAAGATTTCATGTTCTAGTATTT
ACGCTATATTGATTACACCAAAATATACTGAGCCTTTGGATGtttataac
tttttgagattt Run BLAST on NCBI protein sequence of TCONS_00009527-protein >TCONS_00009527-protein ID=TCONS_00009527-protein|Name=TCONS_00009527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MLTFHLTVILSAVVFLSNQPNQGSCFDSLSHLESSFTTTINQLCVEYASA
SCHKQHGEMSRNLFYACCQDKYHECSLDGMSSRNGLGGAHCPISLVPVTF
CYHEKDCQEVYLEVEACSK Run BLAST on NCBI transcript from alignment at sc0000095:442723..444159- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009527 ID=TCONS_00009527|Name=TCONS_00009527|organism=Clytia hemisphaerica|type=transcript|length=1437bp|location=Sequence derived from alignment at sc0000095:442723..444159- (Clytia hemisphaerica)
TCTGTGAGTATTAGCGAGTGAGTTTAGGATCAAATATTCCAAAGTAAAAG
TTGCAAAGGACGAATTGAGGAAAACGAACTGGTTAAAAGGTTTGCCTTCT
TCTAAAACTAGTCAGGATCTAGCCTGAGATCAGATTGTGGTTGTTTTCTA
CACACCACGCTGAAGCTCTAAAGGGATGGGTGAGAACCAAACAATCTAAC
AAATTTGTAAGGACCGCGCTCGTCTAATTAAGGACTGGGATGATTTTGTT
TAAAAATAGGGTGCCGTATCAGTGAATATAATAGAAATAGCGTTAAAGAC
AATGAGGGTGAAAAATCGGAAATTTTCTCCGCCACACAATCATAACTTTT
TCCCCCCCCCCCCCCGAAAAAAATTTTTTGCCCCCCCCCCTCAATCTAAT
TCACACGCCAGGGGGGGGGCTGTGAAAAGACATCCACTTATCACTAAGTC
AGCATATCATTGAATTTCTCTGTTTACTGACTCTTAACCATGACTATAAT
TCATCTTTTTTAAGGTTTTCAACTCGCGGAAGAAGTAATCTGAAACATAA
TGTTGACTTTTCATCTCACCGTCATTCTAAGCGCTGTTGTATTTCTCTCA
AATCAACCTAACCAAGGCAGTTGTTTCGATTCACTCAGCCATCTTGAATC
GTCTTTCACAACTACTATAAATCAGCTATGTGTGGAATATGCTTCAGCTA
GTTGCCACAAACAGCATGGTGAAATGTCACGAAATCTATTCTACGCATGT
TGTCAAGACAAGTACCACGAGTGTTCGCTTGATGGTATGTCAAGCCGAAA
CGGGCTTGGGGGTGCACATTGTCCGATAAGCTTGGTCCCTGTGACCTTTT
GCTATCATGAAAAAGATTGTCAAGAAGTCTATTTGGAGGTTGAAGCTTGC
TCTAAATAAAGGGACTTTATGATGCATGTTTGGATGCATATTACTTTAGG
CGACGCGTACAAACATTCGCGAGTAGAAACTTTTGCGATTTTCGCGAAAG
TAAATGTCTTTAGAAATTCTAGGAAGGGCCCTTTGCGAAAGTTTATACTC
GCAAAAAAACTTTCTACAAAATAGAAAATCTGTAAAACTACAAACTTTGA
ATAAAATGTATCTTTTGTGGCACTTTTTTGCCTGCTAAAAGACTAATAAG
ACAAAGAACAAGTGTTTCAAGCCAATCCAAGAAGTATTAGTCCCTCTAAG
CTATTTTTTCATGTTAAAATTCTCAATTTTACGTCATGATTCGCGAAAGT
TTATGCTCGCGAAAAATATTTTTCCGTTAAATTTGCGAAAGTAAATGTCG
TGAATTTCGCGATTTTTCGTCCTCGCGAAAGTTTCTGCTCGCTAAAGTAT
CTTAAGATTTCATGTTCTAGTATTTACGCTATATTGATTACACCAAAATA
TACTGAGCCTTTGGATGTTTATAACTTTTTGAGATTT Coding sequence (CDS) from alignment at sc0000095:442723..444159- >TCONS_00009527 ID=TCONS_00009527|Name=TCONS_00009527|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000095:442723..444159- (Clytia hemisphaerica)
ATGTTGACTTTTCATCTCACCGTCATTCTAAGCGCTGTTGTATTTCTCTC
AAATCAACCTAACCAAGGCAGTTGTTTCGATTCACTCAGCCATCTTGAAT
CGTCTTTCACAACTACTATAAATCAGCTATGTGTGGAATATGCTTCAGCT
AGTTGCCACAAACAGCATGGTGAAATGTCACGAAATCTATTCTACGCATG
TTGTCAAGACAAGTACCACGAGTGTTCGCTTGATGGTATGTCAAGCCGAA
ACGGGCTTGGGGGTGCACATTGTCCGATAAGCTTGGTCCCTGTGACCTTT
TGCTATCATGAAAAAGATTGTCAAGAAGTCTATTTGGAGGTTGAAGCTTG
CTCTAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009527-exon-sc0000095-1575043694:444071..444159 | TCONS_00009527-exon-sc0000095-1575043694:444071..444159 | Clytia hemisphaerica | exon |
| TCONS_00009527-exon-sc0000095-1575043694:442723..443645 | TCONS_00009527-exon-sc0000095-1575043694:442723..443645 | Clytia hemisphaerica | exon |
| TCONS_00009527-exon-sc0000095-1510915933:444071..444159 | TCONS_00009527-exon-sc0000095-1510915933:444071..444159 | Clytia hemisphaerica | exon |
| TCONS_00009527-exon-sc0000095-1510915933:442723..443645 | TCONS_00009527-exon-sc0000095-1510915933:442723..443645 | Clytia hemisphaerica | exon |
| TCONS_00009527-exon-sc0000095-1491911889:444071..444159 | TCONS_00009527-exon-sc0000095-1491911889:444071..444159 | Clytia hemisphaerica | exon |
| TCONS_00009527-exon-sc0000095-1491911889:442723..443645 | TCONS_00009527-exon-sc0000095-1491911889:442723..443645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095 | supercontig | sc0000095:442723..444159 - |
Blast
The following BLAST results are available for this feature:
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