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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009521 ID=TCONS_00009521|Name=TCONS_00009521|organism=Clytia hemisphaerica|type=transcript|length=2440bpRun BLAST on NCBI protein sequence of TCONS_00009521-protein >TCONS_00009521-protein ID=TCONS_00009521-protein|Name=TCONS_00009521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp RICILTISTMLSLSRTIIPRIAPGLRSLITAPNLPENEPFTDFSNPAVLDRun BLAST on NCBI transcript from alignment at sc0000095:337728..365895- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009521 ID=TCONS_00009521|Name=TCONS_00009521|organism=Clytia hemisphaerica|type=transcript|length=28168bp|location=Sequence derived from alignment at sc0000095:337728..365895- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000095:337728..365895- >TCONS_00009521 ID=TCONS_00009521|Name=TCONS_00009521|organism=Clytia hemisphaerica|type=CDS|length=33960bp|location=Sequence derived from alignment at sc0000095:337728..365895- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009521 vs. Swiss-Prot (Human)
Match: AL4A1 (Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH4A1 PE=1 SV=3) HSP 1 Score: 640.188 bits (1650), Expect = 0.000e+0 Identity = 303/557 (54.40%), Postives = 407/557 (73.07%), Query Frame = 3
Query: 36 SLSRTII--PRIAPGLRSLITAPNLPENEPFTDFSNPA-VLDQLQQAFDKVNSECKDVPIVIGGQEYRTDDVRYQVSPQNHQQKIAKFCYADKNLIEKAIENALINREKWEAMSYDSRSRIILRAAGLVATKYRYDTLARVMLGQGKTSIQADIDSIAELVDFLKFNVQYGKDILNTPSLHQPENIENKVVWRGLEGFVAAISPFNFSAIGANLASGPALMGNVVLWKPSDTAVLSNYQFFEIMQEAGVPDGVVQFIPADGPTFGDVVFSNPDLAGTVFTGSSKTFKTIWRQIGENIDSYKTFPKVVGECGGKNYHFVHKTADVDCVVNGTIRSAFEYGGQKCSACSRVYVPDTLWPEVREKLVSEIAKIKVGN-TEDMSNFLSAVIDGTSFNKIKSYIDHAKSSGDYTVLAGGECDDSVGYFVQPTLIQADDPKGKLMSEEIFGPVCTVYVYPADQAVETLDLVATTSPYGLTGAVFTHDREFLEVARQKLRHTAGNFYINDKSTGSVVGQQPFGGARGSGTNDKAGMGAYLTKWISPQSVKESMAPLPYWKYPYM 1694
+L R ++ P GLR T+ NEP F+ + D LQ+A + + +P V+G +E T DV+YQVSP NH K+AKFCYADK+L+ KAIE AL R++W+ R++I L+AA +++ R + LA+ M+GQGKT IQA+ID+ AEL+DF +FN +Y ++ + P + N V+RGLEGFVAAISPFNF+AIG NLA PALMGNVVLWKPSDTA+L++Y + I++EAG+P ++QF+PADGP FGD V S+ L G FTGS TFK +W+Q+ +N+D + TFP++ GECGGKN+HFVH++ADV+ VV+GT+RSAFEYGGQKCSACSR+YVP +LWP+++ +L+ E ++IKVG+ ED F SAVID SF +IK +++HA+SS T+LAGG+CDDSVGYFV+P ++++ DP+ +M EEIFGPV +VYVYP D+ ETL LV +T+ YGLTGAVF+ D++ ++ A + LR+ AGNFYINDKSTGS+VGQQPFGGAR SGTNDK G Y+ +W SPQ +KE+ PL W Y YM
Sbjct: 7 ALRRALLSRPWTGAGLRWKHTSSLKVANEPVLAFTQGSPERDALQKALKDLKGRMEAIPCVVGDEEVWTSDVQYQVSPFNHGHKVAKFCYADKSLLNKAIEAALAARKEWDLKPIADRAQIFLKAADMLSGPRRAEILAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKYAVELEGQQPISVPPST-NSTVYRGLEGFVAAISPFNFTAIGGNLAGAPALMGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPLFGDTVTSSEHLCGINFTGSVPTFKHLWKQVAQNLDRFHTFPRLAGECGGKNFHFVHRSADVESVVSGTLRSAFEYGGQKCSACSRLYVPHSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKSFARIKKWLEHARSSPSLTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVLRNAAGNFYINDKSTGSIVGQQPFGGARASGTNDKPGGPHYILRWTSPQVIKETHKPLGDWSYAYM 562 The following BLAST results are available for this feature:
BLAST of TCONS_00009521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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