TCONS_00009515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009515
Unique NameTCONS_00009515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009515 ID=TCONS_00009515|Name=TCONS_00009515|organism=Clytia hemisphaerica|type=transcript|length=829bp
gatataaacaaaaacaaaagtattCAATACAGCATTTATTCAAGGACAAA
ATAAAGCATaataaaaatggcaataaagGCAGAAGCATTAGTTATCGTGA
TTGATGTCTCACCCTCAATGAATGACGTTATTGATGAAAGTGGTCAAACA
GCCCTTCAAAAATGTATTACTGCTGCCAACATGATTTTACAAAGAAAAAT
TTTCACAGACACAAAGAAACACAAAGACGAAGCTGCACTTATCCTCTTCG
GAACAGAAGgGGCAAACAATCCATTACACGACCAGTTCGGTGAAGGAAAC
TATGAGAATATCACTATATCACGTGATCTTAGTGTCATTGATGTCGAAAT
GTTGAAATTTGTCAATAATGATATCGTGGCAGGAGCTACTGGTGGGGATT
GTatccttttttgctttttgattTATCATCATGCATTTCTTGGACCTTAA
TTTAAACCCTTTTCCAAACTTGATTTCTACAGTCATCTTTCTTAAGTTAC
TGCACAAAGACCTTTCACACTTCTAGGTGCTTGAAAGGCTTAATAAAAGA
GTGTTGGAATTGAACCCTTTCTGTGCATACCgatattttccattttcttg
CTGATGTCAGAGTAGCAGCTTCAATTTTCCTTGCTGAAAGTTAACCACTT
TTTCCCagtttttttaaccctttcagtcccagagtTTTCACAGCTACTTT
CCCAGACCTgtaaaatgagtttttgaatGCTTTTACTTATGCTTCAATAT
CTATAGAATCACTAAACCTAGGCCTCTCAAGTTTTCACCCTTTTTCACTC
ATAGTATGAGgatcattttgattgaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000095:292319..294904-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009515 ID=TCONS_00009515|Name=TCONS_00009515|organism=Clytia hemisphaerica|type=transcript|length=2586bp|location=Sequence derived from alignment at sc0000095:292319..294904- (Clytia hemisphaerica)
GATATAAACAAAAACAAAAGTATTCAATACAGCATTTATTCAAGGACAAA
ATAAAGCATAATAAAAATGGCAATAAAGGTAAGACGATGGGGACTTTTTT
AGTTCCCTCACCATCTGTTAGCTTTTAACATTCTATTTATGTGGAAAGTA
GTTTAAGAAGTTGTTTTATCCCTGTCAAATTATTATTACTTATTTACATT
TTTAGCCTTGATGTCCCGTTTTGATGACTTTATTATAATGTACTAATTAA
AAATCGGCGAAGAAGTCAATTTGGAATATTTAGTCGCATTTTCTTACAAG
CTTTAGAATCTAATCGCAAACTTATTTTCTTATCTTTTTTTTTTTATTGG
CAGGCAGAAGCATTAGTTATCGTGATTGATGTCTCACCCTCAATGAATGA
CGTTATTGATGAAAGTGGTCAAACAGCCCTTCAAAAATGTATTACTGCTG
CCAACATGATTTTACAAAGAAAAGTGAGACCATTGGTTTTAGATTGAAGA
CATGACACAATCTCCTTGTTGCACTCCAACATACGATTATAAGTAAAAGT
CTGAATTACCAGCTTAGGCTAAGTTTCACTTTACAGTTATCTCCATAGAT
TTATAAAGCCAGAAGTGCTAGATGTCGTGCTTTATTAAGCTCTTCCAAGC
AAAAAAAAGTGAATATCGTAGCTATTGTTTTCTAAAACCCGCGAAGCTCT
TGATTGGTCAAGTGCTGAATCTCTATTGTAATATCACGCGACTTAGGTAG
GATTTCTTACCTAACTACGGTACACTTTTCAGCCAAAGAAACATGAAAGA
AAAGTACATCTTTTTATATTTTATCTTCAGATTTTCACAGACACAAAGAA
ACACAAAGACGAAGCTGCACTTATCCTCTTCGGAACAGAAGGTTGATAAA
TTTTTCTTTTATCTGAATTGCCAATGGTTGATTTTAAACACGCCACTATC
ACCATAAATGACATCGCCATCATGTGCTTCGATTTTTCGTGCAGCTCTAG
TGCCAAGATTATAACAAGCTATGACTCAGCAGCTTGCACCTTAAGAAAAC
CTACAGAACTTCAGAAAGCGGAGAAAATATACACCCCTTCACTTTTTCAG
TGAATTCAAAGTGTCTATTAGCTGTAGTAATTACACATTACAATAGTATT
AAAATGACTGATGTGCAGTGATAAAAGTTGTTCATCTCAGCGAAGTATAT
ATGAATAGGCTTTTCAGTCTCAAAATTCTGCATAATACTCCAAATTTTAA
GAAACTGTCCTGATTGGCTGTCTAAAATCCATTTTCCGTCTAAGATGAAA
ACCTTGCTTTGACCTCTGGGTGTACACGTTTTTTTATAAGAACAAACTAT
ATAAGAATATAAGGCTTCGAGGGCCAAATTTTTAAGAACAAGTTAAGAAC
ATTTTAGGGCTTTGTAGAGCCTAGAACAGGCAATTTAATAGGAAAATGGA
CAAAAATACTCAAAAATTGATGAAAATATAAGAACATGTTAAGAATATTT
TTAGGCTTGAAACTCAGAAAGTTAAGAAAAAAACGTGTATCTGATTTATT
TATTTAAAGGGGCAAACAATCCATTACACGACCAGTTCGGTGAAGGAAAC
TATGAGAATATCACTATATCACGTGATCTTAGTGTCATTGATGTCGAAAT
GTTGAAATTTGTCAATAATGATATCGTGGCAGGTATAAATGTGTTACGCT
TTTCTAAGAAATAAACTTTAAACTTAAAATCTTTAATGAAGTGCAACAGA
ATATGATGGATGGTTGTATTTGAGAGGTTATTCTCCTGAAAGTATCATGA
ATTTAATTTTTTTGTTTAACAATCTAAATAATTACCCAGCTGGCACACAA
CGTTGTTTTAACGTTGATCTAACGTTATATGCACGTTGTGAACGTTAGAT
AAACGTTGAAACAACGTTGTGTGCCAGCTGGGTATGTTCTGAACAATTAC
ATAATCAATCATTGAGTTTCATATGATGGTTGAGCTAGCTTTTTTCTGAA
CTCCTCAATTTAGAATTTTGAGTTACTGTAATTATAATCTTTTTNGATAT
GATGATTGAGCTAGCTTTTTTCTGAACTCCTCAATTTAGAATTTTGAGTT
ACTGTAATTATAATATTTTTTTTTTCTTTATCTTTATAGGAGCTACTGGT
GGGGATTGTATCCTTTTTTGCTTTTTGATTTATCATCATGCATTTCTTGG
ACCTTAATTTAAACCCTTTTCCAAACTTGATTTCTACAGTCATCTTTCTT
AAGTTACTGCACAAAGACCTTTCACACTTCTAGGTGCTTGAAAGGCTTAA
TAAAAGAGTGTTGGAATTGAACCCTTTCTGTGCATACCGATATTTTCCAT
TTTCTTGCTGATGTCAGAGTAGCAGCTTCAATTTTCCTTGCTGAAAGTTA
ACCACTTTTTCCCAGTTTTTTTAACCCTTTCAGTCCCAGAGTTTTCACAG
CTACTTTCCCAGACCTGTAAAATGAGTTTTTGAATGCTTTTACTTATGCT
TCAATATCTATAGAATCACTAAACCTAGGCCTCTCAAGTTTTCACCCTTT
TTCACTCATAGTATGAGGATCATTTTGATTGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005310XLOC_005310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009515-exon-sc0000095-1575043694:294827..294904TCONS_00009515-exon-sc0000095-1575043694:294827..294904Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1575043694:294432..294551TCONS_00009515-exon-sc0000095-1575043694:294432..294551Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1575043694:294014..294074TCONS_00009515-exon-sc0000095-1575043694:294014..294074Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1575043694:293223..293345TCONS_00009515-exon-sc0000095-1575043694:293223..293345Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1575043694:292319..292765TCONS_00009515-exon-sc0000095-1575043694:292319..292765Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1510915933:294827..294904TCONS_00009515-exon-sc0000095-1510915933:294827..294904Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1510915933:294432..294551TCONS_00009515-exon-sc0000095-1510915933:294432..294551Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1510915933:294014..294074TCONS_00009515-exon-sc0000095-1510915933:294014..294074Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1510915933:293223..293345TCONS_00009515-exon-sc0000095-1510915933:293223..293345Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1510915933:292319..292765TCONS_00009515-exon-sc0000095-1510915933:292319..292765Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1491911889:294827..294904TCONS_00009515-exon-sc0000095-1491911889:294827..294904Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1491911889:294432..294551TCONS_00009515-exon-sc0000095-1491911889:294432..294551Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1491911889:294014..294074TCONS_00009515-exon-sc0000095-1491911889:294014..294074Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1491911889:293223..293345TCONS_00009515-exon-sc0000095-1491911889:293223..293345Clytia hemisphaericaexon
TCONS_00009515-exon-sc0000095-1491911889:292319..292765TCONS_00009515-exon-sc0000095-1491911889:292319..292765Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:292319..294904 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00737	0.643414	1.28564	1.94479	0.527855	0.181865	0.637631	0.420939	0.675402	0.0823339	0.67111	2.00668	1.43585	4.65025	5.5801	10.0982	4.52701	6.81582	5.88575	6.3652	5.95631	6.78905	3.86945	4.6635	0.0883468	0.0770844	7.34097	5.75659	2.75601	2.41601
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top