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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009502 ID=TCONS_00009502|Name=TCONS_00009502|organism=Clytia hemisphaerica|type=transcript|length=3500bpRun BLAST on NCBI protein sequence of TCONS_00009502-protein >TCONS_00009502-protein ID=TCONS_00009502-protein|Name=TCONS_00009502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=706bp MKTCVIFFLILNWFALNSDQKPLQHEVTNEALYAKEILTKLLQNAMFREMRun BLAST on NCBI transcript from alignment at sc0000095:183982..209822- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009502 ID=TCONS_00009502|Name=TCONS_00009502|organism=Clytia hemisphaerica|type=transcript|length=25841bp|location=Sequence derived from alignment at sc0000095:183982..209822- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000095:183982..209822- >TCONS_00009502 ID=TCONS_00009502|Name=TCONS_00009502|organism=Clytia hemisphaerica|type=CDS|length=36057bp|location=Sequence derived from alignment at sc0000095:183982..209822- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009502 vs. Swiss-Prot (Human)
Match: PTPRR (Receptor-type tyrosine-protein phosphatase R OS=Homo sapiens GN=PTPRR PE=1 SV=2) HSP 1 Score: 260.766 bits (665), Expect = 3.413e-74 Identity = 159/347 (45.82%), Postives = 200/347 (57.64%), Query Frame = 3
Query: 1218 IRKSSANSSGNSTEKSRTPSLLQSRRGSSASLIIDVSPRTPPRE-LSIPS-HESPTEEILQRKSRCLRFRDLRMAFANDKELHEEFWGIPPNTVGRKDITM-KYSLKNRYSDILPNAKSIVSLRGDGRKDSSSKYINANFIRGYDGIPDQFVATQGPLPCTVIDFWHMVWQYRATAIVMITKLKEKNREKCVQYWPSPGTTTQSVYGDITVTFESEEHRDGYTVISLNISHKGQDEHRKILHYWFTAWPDHHVPKSCTQVVSLAEEVIE---SHQHTGLPIVVHCSAGRGRTGCFIAIFNGIVQINEDNRVDILKIVSQMRIQRGGMVAKDHQYKFIYNALHEYWSK 2240
I+ ++A S S K + P LQ RRGS+ SL +D+S +SIP+ E E LQ SR L LR A+ L EF IP N V K+I + ++ KNRY ILPN S V LR DS S YINAN+IRGY G F+ATQGP+ TV DFW MVWQ + IVMITKLKEKN EKCV YWP + +YG + V S D YT+ +L + +H K HYW+T+WPDH P S ++ L +V E + Q G P+VVHCSAG GRTGCFIA G Q+ E+ VD L IV Q+R+ RGGMV QY+F+++AL Y S+
Sbjct: 313 IKATTATSVCPSPFKMK-PIGLQERRGSNVSLTLDMSSLGNIEPFVSIPTPREKVAMEYLQSASRILTRSQLRDVVASSHLLQSEFMEIPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQGPMINTVDDFWQMVWQEDSPVIVMITKLKEKN-EKCVLYWPE----KRGIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQHVK--HYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASQGRG-PVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQTSEQYEFVHHALCLYESR 650 The following BLAST results are available for this feature:
BLAST of TCONS_00009502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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