TCONS_00009494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009494
Unique NameTCONS_00009494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009494 ID=TCONS_00009494|Name=TCONS_00009494|organism=Clytia hemisphaerica|type=transcript|length=2454bp
GAAATTCCCTGGTTTTtcaataacacagcaaaaagaTTGTATATAAAAAC
TCTGAAGGAAAAGAAATAGGACATTACTAAATCAGTCTATGAAAAACCAA
CACACGATTGACATTGATGACAAGAAGTTTTTTGATAAAGACAAGCTCTT
TGACTtccaataaattttatttggaaatttagACCAGAGGGTCGTTTTTA
TATAGCTTTACTAAAATTTTGACTAAGTCTTTGTGAAAATGGCAATCGAG
AGGTTTCTAGAAATGAACGCTAAACAACGATGCCGGCACGCAAGTATCGG
TGAAATTCCAAAAGAACTTGAAAATACGGGAAACATGAAACGAACTCACA
GTGAAGGAGATATGGACCCATTGAAGAGATTCGAATATTTGAGGAATGGC
AAAGCAACCAGTGTTATGATTCGGGCTACACCGAACGCTGTCAGGTGGGA
CGAAATCAATCGTATCCAATACCGCTTCCAAGCACTCAATTTTCACAGTG
ATgTACTTGATGCTTTGATTCAAAACTCACCACCACTTTCAAGACGAGAA
CACAACGTTGCTTCCAACAAACcgaaaaacgaaaacgaaagtgataaaaa
caataacaatattCCTTTAAATCGTCGCGATGACAACAATAATAACCAAA
ATGGTAGCCTTAGCAGCGACGACGAAGACGATGAAACAGATCTAATTGAC
GCGACATCAACAAAAAAGAATGTCGAGAAAATCCGTAATACGCGCTCCGG
TAAATTGCGTTCAATACGACGATCGAATTCGGCCGACGTTCGAAACGAAA
TCGAACGAAAAGCCTCGGTAGTGCAAGTAGGACCGAAAGACGATACAAGT
GACTATAATAGCGATGAAGAAGTATTTCAAACTCGCTCAGAAGGAGATAT
AGACTTTAATACAACAATATGTCATGTTAAAACAGGTCAAATAAAAGACA
CAACACAAATTCATGTGCAGTCTTATAATACTACGACGAATAATATGGAC
AATGATAATAAACCGTTTACTAAGAAAGACTTGAATCTACTAGCAGATCC
TTCTACTTACGGAAAAGCGAGTCAACGACAAGCTTCATCTGCTCCAGCGT
CTACGAAAATTTCCGTGGTTACACCAATAGAAAGCGTTTCAATCAACGAT
CGATTTCGAAGTGAAATAACGAACCTTGGAGATACAACAAACGAGGATTT
ATCAGCTAAATCGAAAGAAGATCTTATCGAATTGGTCAAAAGTTTACAAA
GGGAACTGGAAACGAGTAAACAACAACAATGCAATCACTCTTCACCACAG
ATGCTTTCTACGAGATCTTCGTGTAGTCGACAAGATTCTATCAGTGAAGA
AATCAGCCCCGAGGAGGAAGCGGACGACGGGCGGTCAACGCCCGCTGTTT
CAACGTtgattgaaaatttcgaaaaacgtgAGGGATTTAGGCTACAAAGG
AGCAGTACTCTACCGTACAGGATTCGAAAAGCACCAAGTTGAACGCAAAC
AAATATTCTGTATGTGATATCGAGGAACCGTTGAAAAGACGAAAGGTTAA
TTACATTACGTTGAGCAAAAGgaatatgctgacgtcagctaTACAGACGA
TACATGTATGTAACATAACCATGCTCTTTATGGATCTTGCCATGCATTGT
GGCGGTACGCCCATTTATTCAAGCCACCAGCCAAACAGAGATCATCGCCC
AATATCACCCTTTATATTCTCACCACGAGTATGCTGTTAAGGCATGAAAG
ttggggacgagatggagtttttacaagctcttatttgatttggttggtcg
ttaaccagtaataaaacaattttgttactttttctaaagaacgcgtcatt
tttattacttcaaatgaccaattattaaagtatcttataaaaactccatt
tcATCTGGAAAGTTGAGCCGTTGCAATTGATGATTGACGTTAAATTCAAC
GCTTGAAGAccaaataaaaactttacacagAAAGATCACACGTAAATGAG
CTACTAGTTAGCCACTTGatttttttatccatttttggGAAAGGATTGAC
ATGGTTAGTTTGACAATGGAGACTTCTCAGATCTTTCTCTTTAGTCTCAA
AATTTTGACATTCAATTTTATTCGATGTTATGTTCTAATTtgtaaaaaac
aacatttttattcaagaaTACCTATAAccttttaatttgtttttcgaaaa
aagCAATTTGTACATTCTACATTAGGTAATGAAATAATTATTAGCGAGTA
CTATAAAACTTGTAAAATTTTAGTTGAGTTTTATATCTTAAAATTCTGAT
TTGTAAAAtagttaattttcaaaaataatagcATAATCTTTTAATACCAA
TTAAAAACCCATTAACGACCTATTGTAAAATATGAGAATATTCGGTTTTC
TTTTTCTAGTATAGTAAAAtaataatacaaaaatatatcaaaatacaaat
ttaa
Run BLAST on NCBI

transcript from alignment at sc0000095:493004..498152+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009494 ID=TCONS_00009494|Name=TCONS_00009494|organism=Clytia hemisphaerica|type=transcript|length=5149bp|location=Sequence derived from alignment at sc0000095:493004..498152+ (Clytia hemisphaerica)
GAAATTCCCTGGTTTTtcaataacacagcaaaaagaTTGTATATAAAAAC
TCTGAAGGAAAAGAAATAGGACATTACTAAATCAGTCTATGAAAAACCAA
CACACGATTGACATTGATGACAAGAAGTTTTTTGATAAAGACAAGCTCTT
TGACTtccaataaattttatttggaaatttagACCAGAGGGTCGTTTTTA
TATAGCTTTACTAAAATTTTGACTAAGTCTTTGTGAAAATGGCAATCGAG
AGGTTTCTAGAAATGAACGCTAAACAACGATGCCGGCACGCAAGTATCGG
TGAAATTCCAAAAGAACTTGAAAATACGGGAAACATGAAACGAACTCACA
GTGAAGGAGATATGGTAAGAGTACGCATGCGCGataaaaatgttttactt
ttcaagaattttgaggCTGTGTTTGGGATgcgtatttaaaaaaaagttat
ttgttttagCTGTATTCCCAAATGATACATAACGTCAAGGAAACGTcaat
ttaacgttcacaacattAAAAggtttcaaagatttttaaatctCGGGTTT
CGAATCTTCATGCTTTCCCAACTTGTACATAATGTCAAGCCACGGTCAAG
CTGAATTCTATCCAACCTTTAAGAGGACACTCTTGCAAAaatatgctgaa
tcagcaaaaaagtTTCATAATATCTAAGTTTCACATGTTTGTGTAGtttg
tattgatgttatgtttaCGTAATATCATTTCTGTCTTACTCAAGATGGCG
AAACTTTTTTCATGTACTTTCTATTTAAGTTTGTTTCAATATCTTGTTTT
TTATAACCATAATGTGAATCAAAATGTGAATTACTCTATACTTTACTCTT
TATTGGTTTCACCATATCTGTCTCTGTAATGCTAATATATCTTTTGGgac
tttgataattttttttgtaagaatatccAAATATCATATGTTAAATATCG
AGATGTAGTACTGACTTTTGATGACACAGACATGGCTTTTTTTGTCTTTT
GGCTTGAATAAAGCAAACAATTTTGACATATGATAGGCTAATAATGATTT
TCTTGTCATAATCATCCTCGTTTCCAGCTACCATGATAAGTATCTCCAAG
TCCTCTCCTTTTCGTGACATTTCGAAACACgaaatttagagggtttatat
aACAGTTAGTCCAAAGCCTGTACCGCTAGCTCAGTCAAAGAGATTCGGGA
AAAGAACTCGAAATTAAACATTacaaaaaaatgacgtcacaactGAGTGC
tttgctcaaaaaattaaaCCAACTTAAAGATGACGTCACAGGGCGCCCTA
TCGATTATGATTTATCTGTTTTCCCCagttgtatttttttcttctctttt
ttccttggaaaagCCACATGGTGCTTGTATATGATTACTTGGAGTGATAA
CATAATTCTTttatactatcgtattacatCCGCtattatgaatttttttc
ttgagtCCGCGCTATTGTAATGGCGtgtattttccttttctttcaaTAAA
GTTAAAGGCACTGCGCCTTTTGTAGTTATATGGTtgcttttaataatttt
ctcagggggatatagaaaaaaaaatcttttatctcgacattttaaatatt
ttaccGACGACCCTCTTATTCTACGACtgttcttttatgttttaacgcAA
CGGAACGAATTTAATTCTTGGACTTGGAAGTTATTTTGTGTTCTTTTTGA
GAGAGATTGTGTtagaaaaaccaaaatattttggtaaagGAGAATTTTGG
CTgtgttttttggaaatttacaaaCAAACAATGGTACAACTcaatttaca
cttttttttaataagaaccagtaaatttttgttgaggctccGCTGCTCTT
attcttttttggtaatttgaGCCTCAtattgttcttatcttgtttTAGGG
CCAAGTTTAGGTAGTCTGACCTTACTTTGACGCGTCCTCTACTAGAAATT
CAGCATTTCCAACTTAAGCAttattattcttaaattgttcttatttttcg
atgattatgatcttcatcgttCTCATAGAAGAAAAAGAGTTCGCCCATAA
TTTAGCTTACGTATCGGTTTCTGTTTTCAAACCTACACGCTTGAAACATG
GTGTAAACAATAGTTTTaacatgaagaaattttcaaatataacATAGATA
AAAGGATATAGTTTTATAGTTCCTTTTCCTTATTagttttccaaatattt
gaagtcaaaagacgtcaaaaaaatttggaagcAGAACTTTTTTCTATGAA
AGAACGGAAAAAAAACTACTGTAGACATATAGGTCACAGAGGGTTATGTT
TAAGGAAAAACACTCaagaaaaatgatcaaaaacaaGAGTTTAATCGACC
TTGTTATTTCTTCTTCTCATGTTCAGGACCCATTGAAGAGATTCGAATAT
TTGAGGAATGGCAAAGCAACCAGTGTTATGATTCGGGCTACACCGAACGC
TGTCAGGTGGGACGAAATCAATCGTATCCAATACCGCTTCCAAGCACTCA
ATTTTCACAGTGATggtatgtaattttttttcaacttcgttcttaactta
ttcttatgAGTTATTGACATTTCTACAAAAACGCGCTAAATTACTTTATC
GGTAGAAAAATTGCCGGCCTTGAAAATTTGTCTGTAAAAAAATCGTCATC
AAGCGactttttcgtcactttttgccGACTAAATGAGCATTGATTTATTA
TTATATGTATTAATTTTCTGCTATTATTTTCTCTCTTTAGTACTTGATGC
TTTGATTCAAAACTCACCACCACTTTCAAGACGAGAACACAACGTTGCTT
CCAACAAACcgaaaaacgaaaacgaaagtgataaaaacaataacaatatt
CCTTTAAATCGTCGCGATGACAACAATAATAACCAAAATGGTAGCCTTAG
CAGCGACGACGAAGACGATGAAACAGATCTAATTGACGCGACATCAACAA
AAAAGAATGTCGAGAAAATCCGTAATACGCGCTCCGGTAAATTGCGTTCA
ATACGACGATCGAATTCGGCCGACGTTCGAAACGAAATCGAACGAAAAGC
CTCGGTAGTGCAAGTAGGACCGAAAGACGATACAAGTGACTATAATAGCG
ATGAAGAAGTATTTCAAACTCGCTCAGAAGGAGATATAGACTTTAATACA
ACAATATGTCATGTTAAAACAGGTCAAATAAAAGACACAACACAAATTCA
TGTGCAGTCTTATAATACTACGACGAATAATATGGACAATGATAATAAAC
CGTTTACTAAGAAAGACTTGAATCTACTAGCAGATCCTTCTACTTACGGA
AAAGCGAGTCAACGACAAGCTTCATCTGCTCCAGCGTCTACGAAAATTTC
CGTGGTTACACCAATAGAAAGCGTTTCAATCAACGATCGATTTCGAAGTG
AAATAACGAACCTTGGAGATACAACAAACGAGGATTTATCAGCTAAATCG
GTacgtttttgttttgacttcCATATAATTCTTGAAGCTTTTTTGGTTTT
AAGGGTCTTTACAATACTACAATTTTTCATTCACAATATTACTACATGTA
ATCCTTCCTCCCGGAATGTTTTGTTTTCTAACTGCAGAATATCTCGAATA
TCTTTTTTATGGGCTTAATATAAAGTTTATAATTTTAACTTAACTTTCTA
ATTCTTATCATCAAAACAGAAAGAAGATCTTATCGAATTGGTCAAAAGTT
TACAAAGGGAACTGGAAACGAGTAAACAACAACAATGCAATCACTCTTCA
CCACAGATGCTTTCTACGAGATCTTCGTGTAGTCGACAAGATTCTATCAG
TGAAGAAATCAGCCCCGAGGAGGAAGCGGACGACGGGCGGTCAACGCCCG
CTGTTTCAACGTtgattgaaaatttcgaaaaacgtgAGGGATTTAGGCTA
CAAAGGAGCAGTACTCTACCGTACAGGGTAGGTTATATATTGAATTATCT
TTGATCCAAATGTCATTGGAAGCGTTCAGAATTTAAGGTTCGGCTCCGCT
GTAAAACATCGAGAACTAGTTCTCTTAGGGGACCTAAAAGACGCTCATCT
TATTACTCACTAGTTCTTTTAAAAGTCATATCTTGACAACAACAGGctta
taattttgaaattttgctcgGAAAAGTTCTTCTGGGATttgatatgtttt
ttttcttcatttctagATTCGAAAAGCACCAAGTTGAACGCAAACAAATA
TTCTGTATGTGATATCGAGGAACCGTTGAAAAGACGAAAGGTTAATTACA
TTACGTTGAGCAAAAGgaatatgctgacgtcagctaTACAGACGATACAT
GTATGTAACATAACCATGCTCTTTATGGATCTTGCCATGCATTGTGGCGG
TACGCCCATTTATTCAAGCCACCAGCCAAACAGAGATCATCGCCCAATAT
CACCCTTTATATTCTCACCACGAGTATGCTGTTAAGGCATGAAAGttggg
gacgagatggagtttttacaagctcttatttgatttggttggtcgttaac
cagtaataaaacaattttgttactttttctaaagaacgcgtcatttttat
tacttcaaatgaccaattattaaagtatcttataaaaactccatttcATC
TGGAAAGTTGAGCCGTTGCAATTGATGATTGACGTTAAATTCAACGCTTG
AAGAccaaataaaaactttacacagAAAGATCACACGTAAATGAGCTACT
AGTTAGCCACTTGatttttttatccatttttggGAAAGGATTGACATGGT
TAGTTTGACAATGGAGACTTCTCAGATCTTTCTCTTTAGTCTCAAAATTT
TGACATTCAATTTTATTCGATGTTATGTTCTAATTtgtaaaaaacaacat
ttttattcaagaaTACCTATAAccttttaatttgtttttcgaaaaaagCA
ATTTGTACATTCTACATTAGGTAATGAAATAATTATTAGCGAGTACTATA
AAACTTGTAAAATTTTAGTTGAGTTTTATATCTTAAAATTCTGATTTGTA
AAAtagttaattttcaaaaataatagcATAATCTTTTAATACCAATTAAA
AACCCATTAACGACCTATTGTAAAATATGAGAATATTCGGTTTTCTTTTT
CTAGTATAGTAAAAtaataatacaaaaatatatcaaaatacaaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005304XLOC_005304Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009494-exon-sc0000095-1491911889:493004..493367TCONS_00009494-exon-sc0000095-1491911889:493004..493367Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1510915933:493004..493367TCONS_00009494-exon-sc0000095-1510915933:493004..493367Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1575043694:493004..493367TCONS_00009494-exon-sc0000095-1575043694:493004..493367Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1491911889:495380..495518TCONS_00009494-exon-sc0000095-1491911889:495380..495518Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1510915933:495380..495518TCONS_00009494-exon-sc0000095-1510915933:495380..495518Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1575043694:495380..495518TCONS_00009494-exon-sc0000095-1575043694:495380..495518Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1491911889:495744..496453TCONS_00009494-exon-sc0000095-1491911889:495744..496453Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1510915933:495744..496453TCONS_00009494-exon-sc0000095-1510915933:495744..496453Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1575043694:495744..496453TCONS_00009494-exon-sc0000095-1575043694:495744..496453Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1491911889:496673..496930TCONS_00009494-exon-sc0000095-1491911889:496673..496930Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1510915933:496673..496930TCONS_00009494-exon-sc0000095-1510915933:496673..496930Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1575043694:496673..496930TCONS_00009494-exon-sc0000095-1575043694:496673..496930Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1491911889:497170..498152TCONS_00009494-exon-sc0000095-1491911889:497170..498152Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1510915933:497170..498152TCONS_00009494-exon-sc0000095-1510915933:497170..498152Clytia hemisphaericaexon
TCONS_00009494-exon-sc0000095-1575043694:497170..498152TCONS_00009494-exon-sc0000095-1575043694:497170..498152Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:493004..498152 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	2.49283	9.33744	3.57837	5.66365	30.5502	19.4309	3.46438	4.23257	14.1252	24.783	118.248	101.787	12.9668	16.6589	10.3743	3.36175	17.1281	2.73758	35.176	32.3372	31.6585	19.9751
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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