TCONS_00009483 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009483
Unique Name	TCONS_00009483
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	833

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000095:414434..420930+

transcript sequence

>TCONS_00009483 ID=TCONS_00009483|Name=TCONS_00009483|organism=Clytia hemisphaerica|type=transcript|length=833bp
GCTAAAGcagagttaaaaaatggaaaacaaaaaactattATCACCAACAC
GGCAGAGTTTGTTTCGAGCATGCAAGTCTCCTGCTAAACAAGAAGATATC
AGAATTCCAGAGCCAGAGAAGAAGATCAAACTTGGAGCTGATTTGCTCAA
TGCTTTTCCAGAGATCgctgaaaattttgatattatcAAGAAGGTTGGAG
AGGGTACATTTAGCAAAGTGTTTCTTGCCAAAATGAAATGTGATTCATCC
AAAAAGGTTGCTTTTAAACATCTAGTTCCAACAAGCTCGCCTGGTCGCAT
AGAAAATGAATTAAAATGCTTACAAGAGCTAGGtaATAAGAATAATGTTC
TTGGCATCAAGACAACACTGCGAAGGAACGATCACATTGTATTCGTCCTG
CCTTACTTTCCATACAGAAAATTTAATGATGTGATGGACCGTATGAGTGC
AAATGATATTCAGAATTACATGAGAAACTTATTGATAGCTTTGAAGCATG
TTCactcttataaaattattcacCGGGATATCAAACCAAGTAATTTCCTT
TATTGCCAAGAAACAGACAGCTATGCATTGATCGACTTTGGTCTAGCCAT
GCCTGTCCCTGGAACAAAAGGATGTTTCCTTTCAGATTACACTGCAACTG
TTGTGGGAATGTCAGACAATAAGAAGCCTTCTTCATCAAAAGCTTATGCT
AAACCATGCAAGCACCCGAGACTTGATACATGTAACATCTGTAGAAATAG
ACCACGTCAAAAAGCACCGAGGGCAGGCACTCCAGGTTTTCGTTCACCAG
AGGTATTGATGAGGTATCCTAACCAAACGACAG

Run BLAST on NCBI

transcript from alignment at sc0000095:414434..420930+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009483 ID=TCONS_00009483|Name=TCONS_00009483|organism=Clytia hemisphaerica|type=transcript|length=6497bp|location=Sequence derived from alignment at sc0000095:414434..420930+ (Clytia hemisphaerica)
GCTAAAGcagagttaaaaaatggaaaacaaaaaactattATCACCAACAC
GGCAGAGTTTGTTTCGAGCATGCAAGTCTCCTGCTAAACAAGAAGATATC
AGAATTCCAGAGCCAGGTAAAACGTATTTTATGTTATACTCAAGGCTGAA
TTTCACGACTAGTCTTGTCATCCAGATCAGACTCAAtcaaactgaaaata
attaattcaTTGACttaaacacatgattttcaaacacattgtctttttta
ttcaaaattgtaGAGAAGAAGATCAAACTTGGAGCTGATTTGCTCAATGC
TTTTCCAGAGATCgctgaaaattttgatattatcAAGAAGGTTGGAGAGG
gtaattattaaatatttcaagtGAAACAATTGACCATCAAGGACTTGCAG
CTAGCAGGTTCACTGGTCCTCTGATAAAAAATTGGGCTTTTTTAACTTTC
GAATTTTGCTCCAAAAACACTCCAACACTAGTTTTCTCTGGAGTATAGCC
AAATGATCAGTGAATGGCTAACACAGGTCATTTAAAGTATAATCTCAAAG
TTTATATAAGATTTAATTGTTTAAAAAAGGTATTTATTTTTAGCACTGCT
TAGCAAGACTAAtccaggaaaatattttttgcattattagttttcatttt
cactttctaagctttcaaaaatttcatatatacccgtgacctgtgacctg
tgttttacactaaccgtacAATCCCTATCATAAGTTattttttactgtca
gactaaTACTAGATTATCATTCAATTCATACAAAATAATAAAGGAAATAA
TCTTAATAAATCTTATCAACTTAAGCTTTTGATTGATTTATTAATTAATA
ATCATTAACTAATGAAATAATACTTTagattaatttcattttctagGTAC
ATTTAGCAAAGTGTTTCTTGCCAAAATGAAATGTGATTCATCCAAAAAGG
TTGCTTTTAAACATCTAGTTCCAACAAGCTCGCCTGGTCGCATAGAAAAT
GAATTAAAATGCTTACAAGAGCTAGGGTAAGTTTTATCATTCTATCCTTT
TTTCTGTATAACAAAATTGGTAATATTGTGCTATCTCAGCCTACTATCAC
AGCCGTCNGTATTTCAAGTGAAACAATTGACCATCAAGGACTTGCAGCTA
GCAGGTTCACTGGTCCTCTGATAAAAAATTGGGCTTTTTTAACTTTCAAA
TTTTACTCCAAAAACACTCCAACACTAGTTTTCTCTGGAGTATAGCCAAA
TGATCAGTGAATGGCTAACACAGGTCATTTAAAGTATAATCTCAAAGTTT
ATATAAGATTTAATTGTTTAAAAAAGGTATTTATTTTTAGCACTGCTTAG
CAAGACTAAtccaggaaaatattttttgcattattatttttcattttcac
tttctaAGCTTTCAAAAACTTCATATatacccgtgacctgtgacctgtgt
tttacactaaccgtacAATCCCTATCATAAGTTattttttactgtcagac
taaTACTAGATTATCATTCAATTCATACAAAATAATAAAGGAAATAATCT
TAATAAATCTTATCAATTTATGCTTTTGATTGATTTATTAATTAATAATC
ATTAACTAATGAAATAATACTTTCgattaatttcattttctagGTACATT
TAGCAAAGTGTTTCTTGCCAAAATGAAATGTGATTCATCCAAAAAGGTTG
CTTTTAAACATCTAGTTCCAACAAGCTCGCCTGGTCGCATAGAAAATGAA
TTAAAATGCTTACAAGAGCTAGGGTAAGTTTTATCATTCTATCCTTTTTT
CTGTATAACAAAATTGGTAATATTGTGCTATCTCAGCCTACTATCACAGC
CGTcgtagatttataaagccgGGTTAGATGTCATgctttaagcttttcca
agcaacaaaaattgaaaatcgcaaaaaatattgttactATTGTTTTTGAA
CACCTGCgaggcttctgattggtcaagggttgaaattcttttgtaatgtc
acttgacctaggtaggatttacTACATAGATaaggcacacttttcagcca
aaacacAATACTCAGCTGTTCTGATAACATAAAGTTTTAGAAAGTGTAAA
ACAATTTCTGATTTCAGTTTGAATATTTTTCTCTCTAGAATTTTGATTGG
CAACTTGAAAATTAACATATTAAtaaattattaattattttCCAGTTGTc
tcatctttttctttttatagtaATAAGAATAATGTTCTTGGCATCAAGAC
AACACTGCGAAGGAACGATCACATTGTATTCGTCCTGCCTTACTTTCCAT
ACAGAAAATTTAATGTGAGCTATTAAGATTATTTGCATgttcctaaaaaa
aattaaatctgtGAAATGCATGATAataaagtctgttccaaaaattcaac
ataagaagacaaaataaccccagcgagatcgctcaatgtttcaatttcag
tctaaaaaggctgattttttCCAATTCTGGGTAGCAAAGTGCATGAAAGc
aggggttattttgtctttttatgttgaatattagtacgaGACACCTTTTA
GCAACCATTTTGCCCTTTTCCTGCCCATTCATGGCCTTagaatgggcaaa
aaatgccatttttactcatttttcccTTTAGTGAGAATCAAAGACCTCCC
TGGGAAATGCTGGATTTTTGATCTAGGAGGTTAAAAATGGAGCAAAATGT
TTTACAATAGATTtttactttcacaaaaaaatactatactttgaattttt
tgacttcacatttgacgatctaccctattGTTATTCACTTAACAAAAAAG
GAAGCAAAAGTATTGCAAAcgataattttcatttttaattgaattGCTTA
TTGCTTATCAGCTCAGTTGATAGAGCATTCACCTTACACTCCAAGGGTTG
TGAGTTTAATCCCCGGTCATCGCCAATTCAgcgaatgagtagcttagatt
gggtaatttGTTCTAAGCAGTAAGTTACTGGgggctgagagtaggtgtgg
cgctccacctcagtaTTCGATTTCCCTGGtctagaaaaggggatagactc
cgtCATTCCTGGCTCCGCTGACACCCACCAGATGAATAAACTCACTTTAC
TTTCCTTATAATTGCAGGATGTGATGGACCGTATGAGTGCAAATGATATT
CAGAATTACATGAGAAACTTATTGATAGCTTTGAAGCATGTTCactctta
taaaattattcacCGGGATATCAAACCAAGTAATTTCCTTTATTGCCAAG
AAACAGACAGGTACAATTATCGATATCATTTGAATTCATAAAATATTtaa
ggattaattaatcctttttgAACCTCTATACTTTGCTTTATTCTGGAAAA
TCTGTTTATATAGCTATATTCAGCTTTTGTACCTAATTCCACCccttgaa
ttttttatttttttctctcaacattttccacccagaacCCAGGCGGAATG
CTTACTATGCCAGGGAATTTTAACTTGTGACGACTCCATTCGCCATTTCT
GCGATGGAGCCACTGAAACCTAGTTTTGGATTCACAAAGTTGTTGAAAAG
TTTACTTTCAAATATAGTATCTAACTGTTTGTGTTTTTCAGCTATGCATT
GATCGACTTTGGTCTAGCCATGCCTGTCCCTGGAACAAAAGGATGTTTCC
TTTCAGGTGAATAGAAGTTTCTCATTGGTTCATTTACTGTACAATGCTCA
CACTTTTCCATCTCAAATGTGGATTTTCTTTActtactttcaaattttga
aggattCGAATCATTCACTAATTCTACCTAAAAATTACTTACATAATTAG
TTATTTTCTGGGAAAGCCAAATCCGGGCGAATTCATTACAGTTCTACTTT
GTCTTTCCTTAAAACATAGTTAATATAAGAAGTagaagatttttcaatat
tATTAATGGTTTTCTTTCAGATTACACTGCAACTGTTGTGGGAATGTCAG
ACAATAAGAAGCCTTCTTCATCAAAAGCTTATGCTAAACCATGCAAGCAC
CCGAGACTTGATACATGTAACATCTGTAGAAATAGGTGACTATACTTTAT
ATTGTAcacaaatttcatgtttaaCCTTTGGAAACTACTTGTTACACTCA
TTGCAATATATCGAGTTAATTTTCTTCCCAGTTTTTGTAGCGTCATTTCT
CTACTTTGCATTATGTAACATAAACTTTCTTACGGAAAAAcggtggtaaa
aaagtgcttgaaaaataCCTTGCAATGTGTCCGCAGGGTGGTCTGCAAAT
TTGTTAAACTGAATCATAATAAAAACAACGACAAAGAAAAGCTTTCAGTC
GGGGTACCAAAATaccttcaaatttcaaaaaaagtttgttttcctTGATG
TTTTATAGACCACGTCAAAAAGCACCGAGGGCAGGCACTCCAGGTTTTCG
TTCACCAGAGGTATTGATGAGGTATCCTAACCAAACGACAGGTATTTGAA
TTATCTTATCCTAAACCCTTTTGGAAAGAGCTGAGTAGAAGCTGTAGCAG
GGTTGTTTAACATGGTTTTAAGTGAATAAGTAAGTtttcgaccgcagtcg
agggtcacccaaaggctcccttttctctagctgtctacctTTCTTTGGAT
ATCCCTTGATCAGTCACTTTAGCTGATAACCATCAATCAGAAAAGCATCA
AGtatcattttgggaatcttaAGTATGACCCAACCCACAACTTTGTGCAC
GGCAgttggatgctctaccttcatgctacggctTTATGGTAGTTAAATTT
CTATACAGGCATTTTAAGATCGACTGTAAATTTTGTGTAAATTATTATCG
AACTGGCAGTAGAACTTAAACTTTGATCTGAAATTgacctttgaaatttt
ttacccCATCTTTGTTTCTACTATCTTGCCTGTAACTTTAGACATTTGcc
cataaatttttttgccaggCCTTAGCAGCGAACTTCTATACTAAAATGAC
TTCAAACAcattaaacttttgaaaagaattattttaatGATGTCCTAGAA
AAGATTTCATGGATACTAAGGTTTGACCCTTACTNGTTCAGATTACACTG
CAACTGTTGTGGGAATGTCAGACAATAAGAAGCCTTCTTCATCAAAAGCT
TATGCTAAGCCATGCAAGCACCCGAGACTTGATACATGTAACATCTGTAG
AAATAGGTGACTATACTTTATACTGTAcacaaatttcatgttttaccTTT
GAAAACTACTTGTTACACTCATTGCAATATATCGAGTTAATTTTCTTCCC
AGTTTTTGTAGCGTCATTTCTCTACTTTGCATTATGTAACATAAACTTAC
TTACGGAATAAcggtggtaaaaaagtgcttgaaaaataCCTTGCAATGTG
TCCGCAGGGTGGTCTGCAAATTTGTTAAACTGAATCATAATAAAAACAAC
GACAAAGAAAAGCTTTCAGTCGGGGTACCAAAATaccttcaaatttcaaa
aaatgtttgttttccTTGATGTTTTATAGACCACGTCAAAAAGCACCGAG
GGCAGGCACTCCAGGTTTTCGTTCACCAGAGGTATTGATGAGGTATCCTA
ACCAAACGACAGGTATTTGAATTATCTTATCCTAAACCCTTTTGGAAAGA
GCTGAGTAGAAGCTGTAGCAGGGTTGTTTAACATGGTTTTAAGTGAATAA
GTAAGTtttcgaccgcagtcgagggtcacccaaaggctcccttttctcta
gctgtctacctTTCTTTGGATATCCCTTGATCAGTCACTTTAGCTGATAA
CCATCAATCAGAAAAGCATCAAGtatcattttgggaatcttaAGTATGAC
CCAACCCACAACTTTGTGCACGGCAgttggatgctctaccttcatgctac
ggctTTATGGTAGTTAAATTTCTATACAGGCATTTAAAGATCGACTGTAA
ATTTTGTGTAAATTATTATCGAACTGGCAGTAGAACTTAAACTTTGATCT
GAAATTgacctttgaaattttttacccCATCTTTGTTTCTACTATCTTGC
CTGTAACTTTAGACATTTGcccataaatttttttgccaggCCTTAGCAGC
GAACTTCTATACTAAAATGACTTCAAACAcattaaacttttgaaaagaat
tattttaatGATGTCCTAGAAAAGATTTCATGGATACTAAGGTTTGACCC
TTACTCTCGTggaatttttagtttttgatatGTTTCGTCACTCTGTTTGT
AGTGTTTTATGTTATCATCTTTTATTATTTCAGCTGTAGATATGTGGGCT
GCTGGTGTTGTTTTCTTATGTTTGTTATCAAGACGTTATCCATTCTTCAA
AGCTAAAGACGATATGGAAGCCCTCTCTCAAATCATTGTCCTCTTTGGCA
gtaagaaaattaagaaaatggcTGACTCGATTGGTAANAGTTTGTTTTCC
TTGATATTTTATAGACCACGTCAAAAAGCACCGAGGGCAGGCACTCCAGG
TTTTCGTTCACCAGAGGTATTGATGAGGTATCCTAACCAAACGACAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005302	XLOC_005302	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000095	supercontig	sc0000095:414434..420930 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.73793	3.2766	63.1935	66.436	0.486632	0	1.8096	2.98076	2.20074	2.38835	1.24285	0.053275	2.27022	2.68802	0.269925	2.68143	3.61296	2.6273	0.939205	0	1.29516	2.01613	1.9367	4.07818	1.98667	4.45149	1.68156	0	1.18167	2.06101

Blast

[Close]

BLAST of TCONS_00009483 vs. Swiss-Prot (Human)
Match: CDC7 (Cell division cycle 7-related protein kinase OS=Homo sapiens GN=CDC7 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.529e-46
Identity = 85/204 (41.67%), Postives = 126/204 (61.76%), Query Frame = 2

Query:   17 KMENKKLLSPTRQSLFRACKSPAKQE-DIRIPEPEKKIKLGADLLNAFPEIAENFDIIKKVGEGTFSKVFLA--KMKCDSSKKVAFKHLVPTSSPGRIENELKCLQELGNKNNVLGIKTTLRRNDHIVFVLPYFPYRKFNDVMDRMSANDIQNYMRNLLIALKHVHSYKIIHRDIKPSNFLYCQETDSYALIDFGLAMPVPGTK 619
            +M+     SP R   F+A  S  K E + ++   +K I+    L  A P+++  F I  K+GEGTFS V+LA  +++    +K+A KHL+PTS P RI  EL+CL   G ++NV+G+K   R+NDH+V  +PY  +  F D+++ +S  +++ YM NL  ALK +H + I+HRD+KPSNFLY +    YAL+DFGLA     TK
Sbjct:    8 QMDEPMAFSPQRDR-FQAEGSLKKNEQNFKLAGVKKDIE---KLYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTK 207

The following BLAST results are available for this feature:

BLAST of TCONS_00009483 vs. Swiss-Prot (Human)

BLAST of TCONS_00009483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CDC7	2.529e-46	41.67	Cell division cycle 7-related protein kinase OS=Ho...	[more]

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TCONS_00009483 (transcript) - C. hemisphaerica