TCONS_00009477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009477
Unique NameTCONS_00009477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2009

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009477 ID=TCONS_00009477|Name=TCONS_00009477|organism=Clytia hemisphaerica|type=transcript|length=2009bp
AAAATTAGTAAGCAAAAAATTAGAAGAACTttacagaagaaattttacTT
ATCCAAAATTTTACCAATCCAATTTTCTTCCCTAAAGCTAAAGcagagtt
aaaaaatggaaaacaaaaaactattATCACCAACACGGCAGAGTTTGTTT
CGAGCATGCAAGTCTCCTGCTAAACAAGAAGATATCAGAATTCCAGAGCC
AGAGAAGAAGATCAAACTTGGAGCTGATTTGCTCAATGCTTTTCCAGAGA
TCgctgaaaattttgatattatcAAGAAGGTTGGAGAGGGTACATTTAGC
AAAGTGTTTCTTGCCAAAATGAAATGTGATTCATCCAAAAAGGTTGCTTT
TAAACATCTAGTTCCAACAAGCTCGCCTGGTCGCATAGAAAATGAATTAA
AATGCTTACAAGAGCTAGGtaATAAGAATAATGTTCTTGGCATCAAGACA
ACACTGCGAAGGAACGATCACATTGTATTCGTCCTGCCTTACTTTCCATA
CAGAAAATTTAATGATGTGATGGACCGTATGAGTGCAAATGATATTCAGA
ATTACATGAGAAACTTATTGATAGCTTTGAAGCATGTTCactcttataaa
attattcacCGGGATATCAAACCAAGTAATTTCCTTTATTGCCAAGAAAC
AGACAGCTATGCATTGATCGACTTTGGTCTAGCCATGCCTGTCCCTGGAA
CAAAAGGATGTTTCCTTTCAGATTACACTGCAACTGTTGTGGGAATGTCA
GACAATAAGAAGCCTTCTTCATCAAAAGCTTATGCTAAACCATGCAAGCA
CCCGAGACTTGATACATGTAACATCTGTAGAAATAGACCACGTCAAAAAG
CACCGAGGGCAGGCACTCCAGGTTTTCGTTCACCAGAGGTATTGATGAGG
TATCCTAACCAAACGACAGCTGTAGATATGTGGGCTGCTGGTGTTGTTTT
CTTATGTTTGTTATCAAGACGTTATCCATTCTTCAAAGCTAAAGACGATA
TGGAAGCCCTCTCTCAAATCATTGTCCTCTTTGGCAgtaagaaaattaag
aaaatggcTGACTCGATTGGAAAAACTTTCGATTGTTCACCTCCAGTAGA
GAATCCGGACACTTTGAAAGTTATCTGTGAAAAATTAGCTCGCAGACAAT
GCTCTTTACATAGAGACTACAAAGAAGGATCTGCAAAACGAAAACTTAGT
GATCCAAGTGCAGCAGCCACTAATAGTCCAAACAAGAAACAAGTAAGCGA
GACAATAATTAAAGACTCTAATCAAAGTAATCGAATCTTAGCCGACATAA
CATTGGGTAAGAACCGACTGACTCAATCAGAATCGACCTCAAAATGTACG
AGTTCTATTTCAAAGTCTAAAAAATCTAAACAACCAGTTTGTGCTTGTAT
ACCTGAAAGTGCGTATGATTTGTTGGGGAAACTACTTGAACTGAACCCTG
ATGATCGAATCAGTGCATCTGATGGTTTAAAACATCCGTTTATCACACAT
TATTGAGCGTGGTTAGTTATCATTATAAAGAATCATTGCTAATTGGTGCT
TGTGCTTTTTACCGATTTTATGtttagaaaagtttttgaagaCCTGGATT
GACTGGATTCGTTCGTTcggtttttttgttttctacatttttttaaCTCC
CTCCAAAGAATCACCCATTTGACTGTCATTAAAATTTTTATGTatggttc
tttttattattatggGTTGTTTTTCAACAATAAAGAGTGAATTGCATTCA
AACCGTGCAGTCATATTTTAtggtttaagaaaaattttgagagcatTGCC
GTTGGTAGACTCAAATATTTGAATAACAAATAATAGacgtttttgatgtt
ttaaagTGTGCCCGGAAAAAAAGTGGTGCACCCATACAAAGGAAAATTTG
TATGATTTTTGCAAGACACTACATTAAAAAACATTTATTAAAAATAATGC
AGttttagttttgtttgtttttagcatacttttgtatatattttgaaTAA
AGATAAAAA
Run BLAST on NCBI

transcript from alignment at sc0000095:414348..423220+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009477 ID=TCONS_00009477|Name=TCONS_00009477|organism=Clytia hemisphaerica|type=transcript|length=8873bp|location=Sequence derived from alignment at sc0000095:414348..423220+ (Clytia hemisphaerica)
AAAATTAGTAAGCAAAAAATTAGAAGAACTttacagaagaaattttacTT
ATCCAAAATTTTACCAATCCAATTTTCTTCCCTAAAGCTAAAGcagagtt
aaaaaatggaaaacaaaaaactattATCACCAACACGGCAGAGTTTGTTT
CGAGCATGCAAGTCTCCTGCTAAACAAGAAGATATCAGAATTCCAGAGCC
AGGTAAAACGTATTTTATGTTATACTCAAGGCTGAATTTCACGACTAGTC
TTGTCATCCAGATCAGACTCAAtcaaactgaaaataattaattcaTTGAC
ttaaacacatgattttcaaacacattgtcttttttattcaaaattgtaGA
GAAGAAGATCAAACTTGGAGCTGATTTGCTCAATGCTTTTCCAGAGATCg
ctgaaaattttgatattatcAAGAAGGTTGGAGAGGgtaattattaaata
tttcaagtGAAACAATTGACCATCAAGGACTTGCAGCTAGCAGGTTCACT
GGTCCTCTGATAAAAAATTGGGCTTTTTTAACTTTCGAATTTTGCTCCAA
AAACACTCCAACACTAGTTTTCTCTGGAGTATAGCCAAATGATCAGTGAA
TGGCTAACACAGGTCATTTAAAGTATAATCTCAAAGTTTATATAAGATTT
AATTGTTTAAAAAAGGTATTTATTTTTAGCACTGCTTAGCAAGACTAAtc
caggaaaatattttttgcattattagttttcattttcactttctaagctt
tcaaaaatttcatatatacccgtgacctgtgacctgtgttttacactaac
cgtacAATCCCTATCATAAGTTattttttactgtcagactaaTACTAGAT
TATCATTCAATTCATACAAAATAATAAAGGAAATAATCTTAATAAATCTT
ATCAACTTAAGCTTTTGATTGATTTATTAATTAATAATCATTAACTAATG
AAATAATACTTTagattaatttcattttctagGTACATTTAGCAAAGTGT
TTCTTGCCAAAATGAAATGTGATTCATCCAAAAAGGTTGCTTTTAAACAT
CTAGTTCCAACAAGCTCGCCTGGTCGCATAGAAAATGAATTAAAATGCTT
ACAAGAGCTAGGGTAAGTTTTATCATTCTATCCTTTTTTCTGTATAACAA
AATTGGTAATATTGTGCTATCTCAGCCTACTATCACAGCCGTCNGTATTT
CAAGTGAAACAATTGACCATCAAGGACTTGCAGCTAGCAGGTTCACTGGT
CCTCTGATAAAAAATTGGGCTTTTTTAACTTTCAAATTTTACTCCAAAAA
CACTCCAACACTAGTTTTCTCTGGAGTATAGCCAAATGATCAGTGAATGG
CTAACACAGGTCATTTAAAGTATAATCTCAAAGTTTATATAAGATTTAAT
TGTTTAAAAAAGGTATTTATTTTTAGCACTGCTTAGCAAGACTAAtccag
gaaaatattttttgcattattatttttcattttcactttctaAGCTTTCA
AAAACTTCATATatacccgtgacctgtgacctgtgttttacactaaccgt
acAATCCCTATCATAAGTTattttttactgtcagactaaTACTAGATTAT
CATTCAATTCATACAAAATAATAAAGGAAATAATCTTAATAAATCTTATC
AATTTATGCTTTTGATTGATTTATTAATTAATAATCATTAACTAATGAAA
TAATACTTTCgattaatttcattttctagGTACATTTAGCAAAGTGTTTC
TTGCCAAAATGAAATGTGATTCATCCAAAAAGGTTGCTTTTAAACATCTA
GTTCCAACAAGCTCGCCTGGTCGCATAGAAAATGAATTAAAATGCTTACA
AGAGCTAGGGTAAGTTTTATCATTCTATCCTTTTTTCTGTATAACAAAAT
TGGTAATATTGTGCTATCTCAGCCTACTATCACAGCCGTcgtagatttat
aaagccgGGTTAGATGTCATgctttaagcttttccaagcaacaaaaattg
aaaatcgcaaaaaatattgttactATTGTTTTTGAACACCTGCgaggctt
ctgattggtcaagggttgaaattcttttgtaatgtcacttgacctaggta
ggatttacTACATAGATaaggcacacttttcagccaaaacacAATACTCA
GCTGTTCTGATAACATAAAGTTTTAGAAAGTGTAAAACAATTTCTGATTT
CAGTTTGAATATTTTTCTCTCTAGAATTTTGATTGGCAACTTGAAAATTA
ACATATTAAtaaattattaattattttCCAGTTGTctcatctttttcttt
ttatagtaATAAGAATAATGTTCTTGGCATCAAGACAACACTGCGAAGGA
ACGATCACATTGTATTCGTCCTGCCTTACTTTCCATACAGAAAATTTAAT
GTGAGCTATTAAGATTATTTGCATgttcctaaaaaaaattaaatctgtGA
AATGCATGATAataaagtctgttccaaaaattcaacataagaagacaaaa
taaccccagcgagatcgctcaatgtttcaatttcagtctaaaaaggctga
ttttttCCAATTCTGGGTAGCAAAGTGCATGAAAGcaggggttattttgt
ctttttatgttgaatattagtacgaGACACCTTTTAGCAACCATTTTGCC
CTTTTCCTGCCCATTCATGGCCTTagaatgggcaaaaaatgccattttta
ctcatttttcccTTTAGTGAGAATCAAAGACCTCCCTGGGAAATGCTGGA
TTTTTGATCTAGGAGGTTAAAAATGGAGCAAAATGTTTTACAATAGATTt
ttactttcacaaaaaaatactatactttgaattttttgacttcacatttg
acgatctaccctattGTTATTCACTTAACAAAAAAGGAAGCAAAAGTATT
GCAAAcgataattttcatttttaattgaattGCTTATTGCTTATCAGCTC
AGTTGATAGAGCATTCACCTTACACTCCAAGGGTTGTGAGTTTAATCCCC
GGTCATCGCCAATTCAgcgaatgagtagcttagattgggtaatttGTTCT
AAGCAGTAAGTTACTGGgggctgagagtaggtgtggcgctccacctcagt
aTTCGATTTCCCTGGtctagaaaaggggatagactccgtCATTCCTGGCT
CCGCTGACACCCACCAGATGAATAAACTCACTTTACTTTCCTTATAATTG
CAGGATGTGATGGACCGTATGAGTGCAAATGATATTCAGAATTACATGAG
AAACTTATTGATAGCTTTGAAGCATGTTCactcttataaaattattcacC
GGGATATCAAACCAAGTAATTTCCTTTATTGCCAAGAAACAGACAGGTAC
AATTATCGATATCATTTGAATTCATAAAATATTtaaggattaattaatcc
tttttgAACCTCTATACTTTGCTTTATTCTGGAAAATCTGTTTATATAGC
TATATTCAGCTTTTGTACCTAATTCCACCccttgaattttttattttttt
ctctcaacattttccacccagaacCCAGGCGGAATGCTTACTATGCCAGG
GAATTTTAACTTGTGACGACTCCATTCGCCATTTCTGCGATGGAGCCACT
GAAACCTAGTTTTGGATTCACAAAGTTGTTGAAAAGTTTACTTTCAAATA
TAGTATCTAACTGTTTGTGTTTTTCAGCTATGCATTGATCGACTTTGGTC
TAGCCATGCCTGTCCCTGGAACAAAAGGATGTTTCCTTTCAGGTGAATAG
AAGTTTCTCATTGGTTCATTTACTGTACAATGCTCACACTTTTCCATCTC
AAATGTGGATTTTCTTTActtactttcaaattttgaaggattCGAATCAT
TCACTAATTCTACCTAAAAATTACTTACATAATTAGTTATTTTCTGGGAA
AGCCAAATCCGGGCGAATTCATTACAGTTCTACTTTGTCTTTCCTTAAAA
CATAGTTAATATAAGAAGTagaagatttttcaatattATTAATGGTTTTC
TTTCAGATTACACTGCAACTGTTGTGGGAATGTCAGACAATAAGAAGCCT
TCTTCATCAAAAGCTTATGCTAAACCATGCAAGCACCCGAGACTTGATAC
ATGTAACATCTGTAGAAATAGGTGACTATACTTTATATTGTAcacaaatt
tcatgtttaaCCTTTGGAAACTACTTGTTACACTCATTGCAATATATCGA
GTTAATTTTCTTCCCAGTTTTTGTAGCGTCATTTCTCTACTTTGCATTAT
GTAACATAAACTTTCTTACGGAAAAAcggtggtaaaaaagtgcttgaaaa
ataCCTTGCAATGTGTCCGCAGGGTGGTCTGCAAATTTGTTAAACTGAAT
CATAATAAAAACAACGACAAAGAAAAGCTTTCAGTCGGGGTACCAAAATa
ccttcaaatttcaaaaaaagtttgttttcctTGATGTTTTATAGACCACG
TCAAAAAGCACCGAGGGCAGGCACTCCAGGTTTTCGTTCACCAGAGGTAT
TGATGAGGTATCCTAACCAAACGACAGGTATTTGAATTATCTTATCCTAA
ACCCTTTTGGAAAGAGCTGAGTAGAAGCTGTAGCAGGGTTGTTTAACATG
GTTTTAAGTGAATAAGTAAGTtttcgaccgcagtcgagggtcacccaaag
gctcccttttctctagctgtctacctTTCTTTGGATATCCCTTGATCAGT
CACTTTAGCTGATAACCATCAATCAGAAAAGCATCAAGtatcattttggg
aatcttaAGTATGACCCAACCCACAACTTTGTGCACGGCAgttggatgct
ctaccttcatgctacggctTTATGGTAGTTAAATTTCTATACAGGCATTT
TAAGATCGACTGTAAATTTTGTGTAAATTATTATCGAACTGGCAGTAGAA
CTTAAACTTTGATCTGAAATTgacctttgaaattttttacccCATCTTTG
TTTCTACTATCTTGCCTGTAACTTTAGACATTTGcccataaatttttttg
ccaggCCTTAGCAGCGAACTTCTATACTAAAATGACTTCAAACAcattaa
acttttgaaaagaattattttaatGATGTCCTAGAAAAGATTTCATGGAT
ACTAAGGTTTGACCCTTACTNGTTCAGATTACACTGCAACTGTTGTGGGA
ATGTCAGACAATAAGAAGCCTTCTTCATCAAAAGCTTATGCTAAGCCATG
CAAGCACCCGAGACTTGATACATGTAACATCTGTAGAAATAGGTGACTAT
ACTTTATACTGTAcacaaatttcatgttttaccTTTGAAAACTACTTGTT
ACACTCATTGCAATATATCGAGTTAATTTTCTTCCCAGTTTTTGTAGCGT
CATTTCTCTACTTTGCATTATGTAACATAAACTTACTTACGGAATAAcgg
tggtaaaaaagtgcttgaaaaataCCTTGCAATGTGTCCGCAGGGTGGTC
TGCAAATTTGTTAAACTGAATCATAATAAAAACAACGACAAAGAAAAGCT
TTCAGTCGGGGTACCAAAATaccttcaaatttcaaaaaatgtttgttttc
cTTGATGTTTTATAGACCACGTCAAAAAGCACCGAGGGCAGGCACTCCAG
GTTTTCGTTCACCAGAGGTATTGATGAGGTATCCTAACCAAACGACAGGT
ATTTGAATTATCTTATCCTAAACCCTTTTGGAAAGAGCTGAGTAGAAGCT
GTAGCAGGGTTGTTTAACATGGTTTTAAGTGAATAAGTAAGTtttcgacc
gcagtcgagggtcacccaaaggctcccttttctctagctgtctacctTTC
TTTGGATATCCCTTGATCAGTCACTTTAGCTGATAACCATCAATCAGAAA
AGCATCAAGtatcattttgggaatcttaAGTATGACCCAACCCACAACTT
TGTGCACGGCAgttggatgctctaccttcatgctacggctTTATGGTAGT
TAAATTTCTATACAGGCATTTAAAGATCGACTGTAAATTTTGTGTAAATT
ATTATCGAACTGGCAGTAGAACTTAAACTTTGATCTGAAATTgacctttg
aaattttttacccCATCTTTGTTTCTACTATCTTGCCTGTAACTTTAGAC
ATTTGcccataaatttttttgccaggCCTTAGCAGCGAACTTCTATACTA
AAATGACTTCAAACAcattaaacttttgaaaagaattattttaatGATGT
CCTAGAAAAGATTTCATGGATACTAAGGTTTGACCCTTACTCTCGTggaa
tttttagtttttgatatGTTTCGTCACTCTGTTTGTAGTGTTTTATGTTA
TCATCTTTTATTATTTCAGCTGTAGATATGTGGGCTGCTGGTGTTGTTTT
CTTATGTTTGTTATCAAGACGTTATCCATTCTTCAAAGCTAAAGACGATA
TGGAAGCCCTCTCTCAAATCATTGTCCTCTTTGGCAgtaagaaaattaag
aaaatggcTGACTCGATTGGTAANAGTTTGTTTTCCTTGATATTTTATAG
ACCACGTCAAAAAGCACCGAGGGCAGGCACTCCAGGTTTTCGTTCACCAG
AGGTATTGATGAGGTATCCTAACCAAACGACAGGTATTTGATGAATTATA
TTATCCTAAACCCTTTTGGAAAGAGCTGAGTAGAAGCTGTAGCAGGGTTG
TTTAACATGGTTTTAAGTGAATAAGTAAGTTTTCGACCGCAGTCAAGGGT
CACCcaaaggctcccttttctctagctgtctacctTTCTTTGGATATCCC
TTGATCAGTCACTTTAGCTGATAACCATCAATCAGAAAAGCATCAAGtat
cattttgggaatcttaAGTATGACCCAACCCACAACTTTGTGCACGGCAg
ttggatgctctaccttcatgctacggctTTATGGTAGTTAAATTTCTATA
CAGGCATTTTAAGATCGACTGTAAATTTTGTGTAAATTATTATCGAACTG
GCAGTAGAACTCAAACTTTGATCTGAAATTgacctttgaaattttttacc
cCATCTTTGTTTCTACTATCTTGCCTGTAACTTTAGACATTTgcccataa
ttttttttgccaggCCTTAGCAGCGAACTTCTATACTAAAATGACTTCAA
ACAcattaaacttttgaaaagaattattttaatGATGTCCTAGAAAAGAT
TTCATGGATACTAAGGTTTGACCCTTACTCTCGTggaatttttagttttt
gatatGTTTCGTCACTCTGTTTGTAGTGTTTTATGTTATCATCTTTGATT
ATTTCAGCTGTAGATATGTGGGCTGCTGGTGTTGTTTTCTTATGTTTGTT
ATCAAGACGTTATCCATTCTTCAAAGCTAAAGACGATATGGAAGCCCTCT
CTCAAATAATTGTCCTCTTTGGCAgtaagaaaattaagaaaatggcTGAC
TCGATTGGTAAGGTCTCCTTCTGTTTCAGGACATCAATCTGCCTGACTCA
GAGAAATTAAGCCCTTGCATAGATAAAAGTCTACTTctgactaaattttg
aaaaaatgcaatttaGAACGGAAAACCGACATCTATGACCTATCAATAAT
TTCCCAATTATCGTTCACTTTCCAAAGAGTAGCGCGAAATCTGATTATCT
GTTTTTGATCATCTTCACCAAAGAGAAATCAATATGGCACGATACTCTCG
GGCCACTTAAACAATGTCTTCCAGTATATCTCATTGAGTGGTTTTCACAC
TAGCCTTTACTCAACCTTACGTTAAGCATTTACAGCTAAGAtacttcatt
ttttgaattcgCATGCTATGAATAATTCTATAGATAATAAATTTGTGCTA
CTTAGAAACTTTTATAGTTTATGGTTTGTGACTTCACTTGATCCAAATCC
ATGTCAGAGAATGGTCAATAAATTTGGGGAAGCCTTATAAACCATCGTCa
atgaaacttttgaatttccctttttctctACAGGAAAAACTTTCGATTGT
TCACCTCCAGTAGAGAATCCGGACACTTTGAAAGTTATCTGTGAAAAATT
AGCTCGCAGACAATGCTCTTTACATAGAGACTACAAAGAAGGATCTGCAA
AACGAAAACTTAGTGATCCAAGTGCAGCAGCCACTAATAGTCCAAACAAG
AAACAAGTAAGCGAGACAATAATTAAAGACTCTAATCAAAGTAATCGAAT
CTTAGCCGACATAACATTGGGTAAGAACCGACTGACTCAATCAGAATCGA
CCTCAAAATGTACGAGTTCTATTTCAAAGTCTAAAAAATCTAAACAACCA
GTTTGTGCTTGTATACCTGAAAGTGCGTATGATTTGTTGGGGAAACTACT
TGAACTGAACCCTGATGATCGAATCAGTGCATCTGATGGTTTAAAACATC
CGTTTATCACACATTATTGAGCGTGGTTAGTTATCATTATAAAGAATCAT
TGCTAATTGGTGCTTGTGCTTTTTACCGATTTTATGtttagaaaagtttt
tgaagaCCTGGATTGACTGGATTCGTTCGTTcggtttttttgttttctac
atttttttaaCTCCCTCCAAAGAATCACCCATTTGACTGTCATTAAAATT
TTTATGTatggttctttttattattatggGTTGTTTTTCAACAATAAAGA
GTGAATTGCATTCAAACCGTGCAGTCATATTTTAtggtttaagaaaaatt
ttgagagcatTGCCGTTGGTAGACTCAAATATTTGAATAACAAATAATAG
acgtttttgatgttttaaagTGTGCCCGGAAAAAAAGTGGTGCACCCATA
CAAAGGAAAATTTGTATGATTTTTGCAAGACACTACATTAAAAAACATTT
ATTAAAAATAATGCAGttttagttttgtttgtttttagcatacttttgta
tatattttgaaTAAAGATAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005302XLOC_005302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009477-exon-sc0000095-1491911889:414348..414549TCONS_00009477-exon-sc0000095-1491911889:414348..414549Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1510915933:414348..414549TCONS_00009477-exon-sc0000095-1510915933:414348..414549Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1575043694:414348..414549TCONS_00009477-exon-sc0000095-1575043694:414348..414549Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1491911889:414697..414783TCONS_00009477-exon-sc0000095-1491911889:414697..414783Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1510915933:414697..414783TCONS_00009477-exon-sc0000095-1510915933:414697..414783Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1575043694:414697..414783TCONS_00009477-exon-sc0000095-1575043694:414697..414783Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1491911889:415330..415459TCONS_00009477-exon-sc0000095-1491911889:415330..415459Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1510915933:415330..415459TCONS_00009477-exon-sc0000095-1510915933:415330..415459Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1575043694:415330..415459TCONS_00009477-exon-sc0000095-1575043694:415330..415459Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1491911889:416654..416747TCONS_00009477-exon-sc0000095-1491911889:416654..416747Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1510915933:416654..416747TCONS_00009477-exon-sc0000095-1510915933:416654..416747Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1575043694:416654..416747TCONS_00009477-exon-sc0000095-1575043694:416654..416747Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1491911889:417551..417693TCONS_00009477-exon-sc0000095-1491911889:417551..417693Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1510915933:417551..417693TCONS_00009477-exon-sc0000095-1510915933:417551..417693Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1575043694:417551..417693TCONS_00009477-exon-sc0000095-1575043694:417551..417693Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1491911889:418025..418089TCONS_00009477-exon-sc0000095-1491911889:418025..418089Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1510915933:418025..418089TCONS_00009477-exon-sc0000095-1510915933:418025..418089Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1575043694:418025..418089TCONS_00009477-exon-sc0000095-1575043694:418025..418089Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1491911889:418354..418468TCONS_00009477-exon-sc0000095-1491911889:418354..418468Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1510915933:418354..418468TCONS_00009477-exon-sc0000095-1510915933:418354..418468Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1575043694:418354..418468TCONS_00009477-exon-sc0000095-1575043694:418354..418468Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1491911889:418792..418874TCONS_00009477-exon-sc0000095-1491911889:418792..418874Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1510915933:418792..418874TCONS_00009477-exon-sc0000095-1510915933:418792..418874Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1575043694:418792..418874TCONS_00009477-exon-sc0000095-1575043694:418792..418874Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1491911889:420667..420816TCONS_00009477-exon-sc0000095-1491911889:420667..420816Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1510915933:420667..420816TCONS_00009477-exon-sc0000095-1510915933:420667..420816Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1575043694:420667..420816TCONS_00009477-exon-sc0000095-1575043694:420667..420816Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1491911889:422281..423220TCONS_00009477-exon-sc0000095-1491911889:422281..423220Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1510915933:422281..423220TCONS_00009477-exon-sc0000095-1510915933:422281..423220Clytia hemisphaericaexon
TCONS_00009477-exon-sc0000095-1575043694:422281..423220TCONS_00009477-exon-sc0000095-1575043694:422281..423220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:414348..423220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.94434	0.311522	18.2515	40.8888	0.0440988	1.14805	0	1.20591e-08	0.194326	0.264127	4.23739e-06	7.18124e-08	0	0.444873	0.647309	4.05245e-05	1.4707e-07	3.89194e-08	0.148575	1.3252e-08	0	0	9.05596e-08	1.23005	0.22716	0.00381622	0	0	0	0.389903
Blast
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BLAST of TCONS_00009477 vs. Swiss-Prot (Human)
Match: CDC7 (Cell division cycle 7-related protein kinase OS=Homo sapiens GN=CDC7 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.279e-44
Identity = 85/204 (41.67%), Postives = 126/204 (61.76%), Query Frame = 1 
Query:  103 KMENKKLLSPTRQSLFRACKSPAKQE-DIRIPEPEKKIKLGADLLNAFPEIAENFDIIKKVGEGTFSKVFLA--KMKCDSSKKVAFKHLVPTSSPGRIENELKCLQELGNKNNVLGIKTTLRRNDHIVFVLPYFPYRKFNDVMDRMSANDIQNYMRNLLIALKHVHSYKIIHRDIKPSNFLYCQETDSYALIDFGLAMPVPGTK 705
            +M+     SP R   F+A  S  K E + ++   +K I+    L  A P+++  F I  K+GEGTFS V+LA  +++    +K+A KHL+PTS P RI  EL+CL   G ++NV+G+K   R+NDH+V  +PY  +  F D+++ +S  +++ YM NL  ALK +H + I+HRD+KPSNFLY +    YAL+DFGLA     TK
Sbjct:    8 QMDEPMAFSPQRDR-FQAEGSLKKNEQNFKLAGVKKDIE---KLYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTK 207

HSP 2 Score: 135.961 bits (341), Expect = 1.227e-33
Identity = 87/235 (37.02%), Postives = 122/235 (51.91%), Query Frame = 1 
Query:  817 CNICRNRPRQKAPRAGTPGFRSPEVLMRYPNQTTAVDMWAAGVVFLCLLSRRYPFFKAKDDMEALSQIIVLFGSKKIKKMADSIGKTFDCSPPVENPDTLKVICEKLARRQCSL---------HRDYKEGSAKRKLSDPSAAATNSPNKKQVSETIIKDSNQSNRILADITLGKNRLTQXXXXXXXXXXXXXXXXXXQPVCACIPESAYDLLGKLLELNPDDRISASDGLKHPFI 1494
            C+IC +R +Q APRAGTPGFR+PEVL + PNQTTA+DMW+AGV+FL LLS RYPF+KA DD+ AL+QI+ + GS++  + A + GK+  CS  V   D L+ +CE+L     S          H  ++   +++     S      P +   +     DSN       +         +                        +P+ AYDLL KLL+LNP  RI+A + L HPF 
Sbjct:  360 CSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQD-LRKLCERLRGMDSSTPKLTSDIQGHASHQPAISEKTDHKASCLVQTPPGQYSGNSFKKGDSNSCEHCFDEYNTNLEGWNE------------------------VPDEAYDLLDKLLDLNPASRITAEEALLHPFF 569
The following BLAST results are available for this feature:
BLAST of TCONS_00009477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC75.279e-4441.67Cell division cycle 7-related protein kinase OS=Ho... [more]
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