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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009471 ID=TCONS_00009471|Name=TCONS_00009471|organism=Clytia hemisphaerica|type=transcript|length=738bp
AATATTTGGACTATGACGTTGCATTGGACGTTTTCAAAACATACGAAATC
TTTCACCTGAAACCACTGTTCGTCGGCAAAATGAATGAAGCTTTGGATTA
TAATCTGAAATTTGATTCAACACTTCCAAAGATCTTGGGTTTCCCAGAGC
TGCCAAAAGgAAGTAACATTGTGGAAGGAGTAGTTGCAAAACCGATGAAG
AATTTGAAATGCACTGATCAATATGATGAAGAAACAAGAGCCATTGTCAA
ATTAAAGAACCCTGGATTCACCGAGACAAAACCAATGCCTAAAGCAAGAG
atGCCAAAAAAGGTGGCAAACCTCCTAAGCTAATCAGCAAGATCATGGCA
TATGCAACAGAGGCACGTCTCAATAATGCAATTTCAAAACATGGTGCGCC
TACCGAAGATGAAGTCATCAAACGTATCGTGAAGGAGTTTGTGGATGACA
TCTTTGAGGATATCGAAACTGAAGATGAAGGTCTTCACCAAGAGTGGAGC
AAAGAGGATGAATCTGACaaagataaaatcaaaacaacattgacATCAAA
AGCAAATGGTCTTATCAAGAAGATTAACAGTGGAAGGTAGCACCCCTTTA
CAAGGTGATAtagaaattcatttttaattCGTGGAAATTCATATAACTAA
GAGCTACCCGGTGTTATAGCGGATAGTATCGTATCAGAGTCCACAACGTC
TGAGAGATAACTGAGACGCTCTGGTTCTTCAatcctca Run BLAST on NCBI transcript from alignment at sc0000095:372658..375405+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009471 ID=TCONS_00009471|Name=TCONS_00009471|organism=Clytia hemisphaerica|type=transcript|length=2748bp|location=Sequence derived from alignment at sc0000095:372658..375405+ (Clytia hemisphaerica)
AATATTTGGACTATGACGTTGCATTGGACGTTTTCAAAACATACGAAATC
TTTCACCTGAAACCACTGTTCGTCGGCAAAATGAATGAAGCTTTGGATTA
TAATCTGAAATTTGATTCAACACTTCCAAAGATCTTGGGTTTCCCAGAGC
TGCCAAAAGGTAAGACATTATTTCATGACCGAAAAGGAGTTACAAAGAAA
CCTAAAATCAAGCATGTTTATTACTTATTAAGACAATATCAAGTAAATTG
TACCATATTTATCATTGTGACAACTGTTGAAGAataaaatgtgtttttaa
aGATACTTACTCGACCCTTAAACTGAAAATACCTCCCCAGATGGCAtgta
acgttgtttcaacgttcaactAACATCATATGGACTTCATGAACGTGTTA
GATAGGGCGGCAAAACATCGTTCCTTGTCAGCTTGGTCAGGCATCGAGGA
TTGAATCCGAATCcgatcttcatcttttaggAAGTAACATTGTGGAAGGA
GTAGTTGCAAAACCGATGAAGAATTTGAAATGCACTGATCAATATGATGA
AGAAACAAGAGCCATTGTCAAATTAAAGAACCCTGGATTCACCGAGACAA
AACCAATGCCTAAAGCAAGAGGTATAATGAAATTATTTCATTCTTTTATG
AAGATAAATAgatttattatatacctgtaggcaaaaacagccattgaata
attcctgatataccatggcaATTATACAACTAtgaatctcaataaccaac
ttttacccattgaatatctgcttaatattaCCCAAAATATAGTACAACTA
AGAACCATTGTAAGATTTCAAAAAGTTCCCCAATATGTGATTATTATAGC
TCTGATTCAATTTGGAAAAATAACGTTTGATgtcaaaaaggtaaaaattg
aCATCGCTAAAATTCATCCAAATGAATAAAAACAGAGATTTACAAGTTAG
GCTCACAGTGGGCCTCTAACCGATCTTATTTAAACTCTTCCTGTGTCGTA
TTTCAAGCCATGGGTTTTCCATGCATCgttaagtttttctttgaatgatT
TGCTGGAATCTGCTGAAACAACATCACTTGGTAGCTTGTTCCAGATTGGT
ACACACCTATAGTAAAAGAATTTNattcctgatataccatggcaATTATA
CAACTAtgaatctcaataaccaacttttacccattgaatatctgcttaat
attaCCCAAAATATAGTACAACTAAGAACCATTGTAAGATTTCAAAAAGT
TCCCAAATATGTGATTATTATAGCTCTGATTCAATTTGGAAAAATAACGT
TTGATgtcaaaaaggtaaaaattgaCATCGCTAAAATTCATCCAAATGAA
TAAAAACAGAGATTTACAAGTTAGGCTCACAGTGGGCCTCTAACCAATCT
TATTTAAACGCTTCCTGTGTCGTATTTCAATCCATGGGTTTTCCATGCAT
CgttaagtttttctttgaatgatTTGCTGGAATCTGCTGAAACAACATCA
CTTGGTAGCTTGTTCCAGATTGGTACACACCTATAGTAAAAGAATTTTGC
TTGTGGTCCGTTGAAACCGTCATTCGCGAAGTTTGGTGAGAGTTCGTGAG
CGTATCTTCGGTTTGGGCGTGTTCGACTAGTCAGTTTGTCCGGTAATGTC
GCTTTATCGTAAAAGTGGAGGTGTTTGTAGACCTGGACCATATCACAGAA
CTGTCTTCGAAATTCCAGTGTTGGTAGATCAAGCATTTTAAGTCCTTCGC
TATACGAAAAGTTGCGACACGTTTGGACTAGTCTTGTTGCACATCTTTGC
ACTCCCTCAAGCAAATTGACGTGCTTGCGTAGTCTTGGTGACCAAACTGA
CTGTGCATACTCGAGATGAGGTCGCACAAAGGTCGAGTATAGTGTACGGA
GGATCTCTGGAGTTAAGCTGGCGAAACCTCGCTTGATGACCCCGAGCATA
GATATAGCCTTGTTGACTTGCTTGGCTATTCAAATGATAATTCAGCATCA
ATCAGTTATACCAAGGTCTTTTTCTTCGAATACATGCTCAAGCTGATTAT
CCGCAAGACGAAAGGGGTAAGCATGTTTGATGTTTGTGAAAGCGTAAGGA
CGTGGCATTTGTCGGGGTGGAATTTCAAGAGCCAATCTTCAGACCATTTT
TCGAGTTTTTCTATATCACTTTGGATGATGCGGAGAGAATCAGTGATAGA
ATTGAAAATCTTCGTGTCATCTGCGAAAAGTAGTAGAGATGAAATAACTT
TGTCAGGCAGATCATTTATGTACAAGACAAAAAgcaatataaaatttttt
ttttctctagatGCCAAAAAAGGTGGCAAACCTCCTAAGCTAATCAGCAA
GATCATGGCATATGCAACAGAGGCACGTCTCAATAATGCAATTTCAAAAC
ATGGTGCGCCTACCGAAGATGAAGTCATCAAACGTATCGTGAAGGAGTTT
GTGGATGACATCTTTGAGGATATCGAAACTGAAGATGAAGGTCTTCACCA
AGAGTGGAGCAAAGAGGATGAATCTGACaaagataaaatcaaaacaacat
tgacATCAAAAGCAAATGGTCTTATCAAGAAGATTAACAGTGGAAGGTAG
CACCCCTTTACAAGGTGATAtagaaattcatttttaattCGTGGAAATTC
ATATAACTAAGAGCTACCCGGTGTTATAGCGGATAGTATCGTATCAGAGT
CCACAACGTCTGAGAGATAACTGAGACGCTCTGGTTCTTCAatcctca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009471-exon-sc0000095-1491911889:372658..372816 | TCONS_00009471-exon-sc0000095-1491911889:372658..372816 | Clytia hemisphaerica | exon |
| TCONS_00009471-exon-sc0000095-1510915933:372658..372816 | TCONS_00009471-exon-sc0000095-1510915933:372658..372816 | Clytia hemisphaerica | exon |
| TCONS_00009471-exon-sc0000095-1575043694:372658..372816 | TCONS_00009471-exon-sc0000095-1575043694:372658..372816 | Clytia hemisphaerica | exon |
| TCONS_00009471-exon-sc0000095-1491911889:373138..373278 | TCONS_00009471-exon-sc0000095-1491911889:373138..373278 | Clytia hemisphaerica | exon |
| TCONS_00009471-exon-sc0000095-1510915933:373138..373278 | TCONS_00009471-exon-sc0000095-1510915933:373138..373278 | Clytia hemisphaerica | exon |
| TCONS_00009471-exon-sc0000095-1575043694:373138..373278 | TCONS_00009471-exon-sc0000095-1575043694:373138..373278 | Clytia hemisphaerica | exon |
| TCONS_00009471-exon-sc0000095-1491911889:374968..375405 | TCONS_00009471-exon-sc0000095-1491911889:374968..375405 | Clytia hemisphaerica | exon |
| TCONS_00009471-exon-sc0000095-1510915933:374968..375405 | TCONS_00009471-exon-sc0000095-1510915933:374968..375405 | Clytia hemisphaerica | exon |
| TCONS_00009471-exon-sc0000095-1575043694:374968..375405 | TCONS_00009471-exon-sc0000095-1575043694:374968..375405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095 | supercontig | sc0000095:372658..375405 + |
Blast
The following BLAST results are available for this feature:
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