TCONS_00009461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009461
Unique NameTCONS_00009461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009461 ID=TCONS_00009461|Name=TCONS_00009461|organism=Clytia hemisphaerica|type=transcript|length=875bp
cagtttttcagttttttcattcatttagtTCAGGAGCTAAGGGTATAGCG
AGACGCATCCCTGCGCCAATATGTTTGGTAAAACTGAGAAACTAGTTCtg
agaaaataaatttatttgactTTCCCTCTGATATTACCCCTTTTTCGGTa
taatttcatttccaaaattaCCAGAAAAATAATGCTGTCATTCTTTTTAC
AGTTCGAAGGGAAAGAGGATTTACCACCGAGTGAATATCCTTACCACTGT
TGCTATGGAGATGGTGAAGAAATCgaggatgacgtcatcgatcACATTCG
TTCGGTTATGTGGAGAAATGCAATGTCATTGGTTCTTTTCCCTGGAGATG
TTTTGATATTAGATAACTTGCTGTGTCAGCATTCGAGGATAGGATATAAA
GGAGGAGAAAGGAAAGTTGTGGTATTTTTGGGGGAACCAATCAACAGATA
GaatcccactggaaaaattggtcaaattatcgtccccggtggaagaTTAA
CCTCCAATCTTtgaatcctcactgcaaaatattatgctatttttcccatc
tctACTAacttttctgacttgaaaacaaaagaatttaaatccccagtcat
aaaaaatatgggaatatccaGTTTCAGTCCTTTagttttacccccactgg
ctggctgaaaaaatcctatcgGGTCTGCGAGAGGGGGTGATATAATATGC
CAATAATGTCAATGGTGAGATTGCTAATGAGATTTCAATCAGATCCAAAT
CTCAATTTTACGCGCGCACTGTAATATAATATGGACTTGATCAAACAGGT
AAAGCAAGAAATCTATACATTTAAATTGAGTTTATCCCTAAAATTTTTGT
TACAGAACATTTTTATTAAACCCAG
Run BLAST on NCBI

transcript from alignment at sc0000095:158982..159856+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009461 ID=TCONS_00009461|Name=TCONS_00009461|organism=Clytia hemisphaerica|type=transcript|length=875bp|location=Sequence derived from alignment at sc0000095:158982..159856+ (Clytia hemisphaerica)
cagtttttcagttttttcattcatttagtTCAGGAGCTAAGGGTATAGCG
AGACGCATCCCTGCGCCAATATGTTTGGTAAAACTGAGAAACTAGTTCtg
agaaaataaatttatttgactTTCCCTCTGATATTACCCCTTTTTCGGTa
taatttcatttccaaaattaCCAGAAAAATAATGCTGTCATTCTTTTTAC
AGTTCGAAGGGAAAGAGGATTTACCACCGAGTGAATATCCTTACCACTGT
TGCTATGGAGATGGTGAAGAAATCgaggatgacgtcatcgatcACATTCG
TTCGGTTATGTGGAGAAATGCAATGTCATTGGTTCTTTTCCCTGGAGATG
TTTTGATATTAGATAACTTGCTGTGTCAGCATTCGAGGATAGGATATAAA
GGAGGAGAAAGGAAAGTTGTGGTATTTTTGGGGGAACCAATCAACAGATA
GaatcccactggaaaaattggtcaaattatcgtccccggtggaagaTTAA
CCTCCAATCTTtgaatcctcactgcaaaatattatgctatttttcccatc
tctACTAacttttctgacttgaaaacaaaagaatttaaatccccagtcat
aaaaaatatgggaatatccaGTTTCAGTCCTTTagttttacccccactgg
ctggctgaaaaaatcctatcgGGTCTGCGAGAGGGGGTGATATAATATGC
CAATAATGTCAATGGTGAGATTGCTAATGAGATTTCAATCAGATCCAAAT
CTCAATTTTACGCGCGCACTGTAATATAATATGGACTTGATCAAACAGGT
AAAGCAAGAAATCTATACATTTAAATTGAGTTTATCCCTAAAATTTTTGT
TACAGAACATTTTTATTAAACCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005298XLOC_005298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009461-exon-sc0000095-1491911889:158982..159856TCONS_00009461-exon-sc0000095-1491911889:158982..159856Clytia hemisphaericaexon
TCONS_00009461-exon-sc0000095-1510915933:158982..159856TCONS_00009461-exon-sc0000095-1510915933:158982..159856Clytia hemisphaericaexon
TCONS_00009461-exon-sc0000095-1575043694:158982..159856TCONS_00009461-exon-sc0000095-1575043694:158982..159856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:158982..159856 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0642141	0	0.0218186	0	0.140099	0.117434	0.478336	0	0	0	0.0190068	0.855143	0	0	0	0	0	0.0766141	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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