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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009443 ID=TCONS_00009443|Name=TCONS_00009443|organism=Clytia hemisphaerica|type=transcript|length=2268bp TTTTTGATTAGGTGTTTATCTATGCTCAGTCGAGGGAAGGAAACGCAAGG TCGAACGGATTATTTTGTTTTCCAGTCTTTGAGTTTGTTTTATTTAAGGA GAATAAAACCATTTCTGCAATCATTTTCTATCTTTACTCGAGATTAAAGA TACACAGCCGAGgtcTTCTAGATAAAAAACATAACCAACATGGCAGATAT TCCCGATGCAAAAGAACAATATATGAGACTCAACAATGAAATCAAACCGA GAtttgagaaattgaaaaatatagatCTATTCGTCATCGATAACTCTATC CGTGAGTCCACTGTGGGTGCTCTTCGTGGACACACACTGGAAAATAAATA CAGCATTTTGAATGAGACAAAGGAGCTTGGTTTCCAGCATAACATCGTTG GAGCATTTTCACACTTGCGTAGAGTCGACGATGAATTTATCACGCATCTC ATCAAGAGTGGGGAAGATATGACCAACAAGTATGCCTTCTCCGAATTTTA TGACAGTTGTGACAAGAAAACACATTTACCTGTTCCCGGTATCCCGATCG GATTACAAAAATGTAAAGAGCTTGGTGTCCCCAATGTGATTATGGAGGTT GACTTGGCAAATCTAGCACCTGAAAGTCAATTCACCCATGAGAAGAGATG CCAACTCTTCCTAGAAAGATTCCAATGGATTCGTGAGAATCTAAAGTCCC CAGGTAGGATTTTAATCAATTTACGTGATCTCCCAGCTGCCATCATTAAT CCAAAACTCCTTGATCTAGTCTTGGAGACAGTTGATTTCCTATCTCGACA TCGTCCTCAAATATTTGCTATCCTTACTGAGGAACCGACTGGTCAATACT TTCCTGAACAACTACGAAACATGACCAAGACAGTCACCGATCTGATGAAA GGAAATGGATACACCGGTCATTTCTTGGTCCACATTCATCAGCAATGGGG TCTACACAATGCTGGTAACTTAGAATGTCTTGCAAATGGTGCTACAGGGA TTTGGTGCTCTGTATCCGAGGAAGGAGCCGCTCTTGGACATGCTTCGTCA GCATTAACAATTATGAATCTCATTCGACTTGGAAACACCAAAGTTCAAGA GCGTTATAACTGCAAATATATAAGAAAAGCTGCTCAGAATATCACCCAGG TTGTATCGGGCAAACCCGCCCATCCAAAAACACCAGTTTATGGTGCTAGA GCTGTTGATCAAGTCTTTGGTCTCAGTGGAATGGGCGGTAATGTGGGCGG ATTTGGTAATATGGACCTTGCCGAGTTTTTCGATATCACCAAAACAATGC GAATTACCACACTTGCATCAAATGATATGATTGTTACCAGATTGACCCGT TTGTTTGGCGAGGATCCTAATTTCACTGAAGCAAGAGCGGAGCTGATGAA ACAGCAAATGTTGGATGATTACAAGAACAACAAGAAAGAGGAATACCACA GTCCTATTGGATTAATCACATTGTTTGATAAAGCTGGAGGTAAAAAGACT CCAGCAATGTTGAAAGCACTTCAAgagTATGAAGTCCAATCGTTGCATAT CCAAGAGCTGATCGAAGAGATTCACGACCTTTGGAAGTTGTGGGATTCTT CAGACGGCAATTTAGATGGAAACATCACATTCGATAATTTCTATAACGCC TTCATGAACGAATACTTCGGTTGTTACAGATGTACGCAAACTCAACAAGC ACTTCAAGCTATTAATGTTGTTGATGATGATGTCATCTCTTGGGATGAGT TTTCCATCTTTTTGAAATGGGCTGGTAAAGAATATCCGCAAGTTGAAGAC GCAGAAGCTTTACTGGAGAAAGCTTTCTTGGAAGGTATTGTACCAGCAAT GCAAGATGAAGTTATCAAGAGTGCCAAATCTGGCAAAAGTCTTTTCCACG ATCCACATAATTTCTAAATGAATTACTGTAATGGAATTTGATGCATAGAC TCTTAgaattaaattattttgttcTAACAATTATTATTTATTTCGAATTG TATTAAAGTCACACGTCACAAGAAGATGAAATTCACCTATAAATCTTGCC ACCAAAAGGATTTCAGGTTGGAGTTGAcgaaattatattttattaggaAA CTCGACTCCATTTCTCTTTCATCCAGGTTGATAGATGTATTGACGCACTT AAGGTTTATTATGCCCCTGATACACatcttatttataaaaaatccGTACA TATAATTTATATTTAACATTTGTATTTTCTCAAATGCTGAATATAAACAT CCTTAAAAACGAAAAACT Run BLAST on NCBI transcript from alignment at sc0000095:112563..119729+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009443 ID=TCONS_00009443|Name=TCONS_00009443|organism=Clytia hemisphaerica|type=transcript|length=7167bp|location=Sequence derived from alignment at sc0000095:112563..119729+ (Clytia hemisphaerica) TTTTTGATTAGGTGTTTATCTATGCTCAGTCGAGGGAAGGAAACGCAAGG
TCGAACGGATTATTTTGTTTTCCAGTCTTTGAGTTTGTTTTATTTAAGGA
GAATAAAACCATTTCTGCAATCATTTTCTATCTTTACTCGAGATTAAAGA
TACACAGCCGAGGTAGGTCAATGGAAGTAAGTAAGTCTTGAAAATATCTT
TACAACTATGTAATAAAGTGCATTGGTATGAATTTAATTTGACAGAtggt
caaaaaagttttatacaTGGAATTGAATTTAATAGCAAGTAGCACCGGGA
TTTTTCTTTCCATTTCTTAGTGAGTTTTACTTTGATgaattctgaaaaat
agaagccttttaGATGTTCTGACGTAAATTCACGCAAAGTGGAATGGGCG
TTACTGCGTAGAAAAAAAGCCGTGACTTCTAGTATAATAATTTCGTTGGa
aggcttgaaaatgaaatttggcaGGAATGCAGGTTCTTAGTATGTTCGTT
TATTTCTTTATAGAAATGCTGACAAATTTTTACAGATCCGTCTCTTTCCA
CAAAGATTTCTACCAAAATATTCTGTCCAGGAAATATCCAGTCGGAAAGA
TGTCCGTTAGTATAAAATCTGTTTGGGAAACATTCGTTAGGAAAAGTTTC
CGGGtataatttgagaaaaattcgtAAAAGGTAATACTCTTCGGTaaaag
tcccggggggggggttNTTTTTTGGTCAAATATTGCCATTAAATAAGCAA
ATATCTGTAAGGAAAGTGTACGAAATAATTTAGATTTTGTGGTAATTCAT
TTATGACGGTTGgcggaaatttttcaattttggttagAAANTATAAAATC
TGTTTGGGAAACATTCGTTAGGAAAAGTTTCCGGGtataatttgagaaaa
attcgtAAAAGGTAATACTCTTCGGTaaaagtcccggggggggggttagt
TAGgaaaaattgggtacggggacgtgcggCTCGTCAGAGTCTtcttttag
gctctgaagatatctgacagggtccaaaatttactgattttcAAGCCCAT
CCCgcataaaatgattttgaagttTCGCTTAGGCTCATCAACAAAATATG
TTGGAAAAAAACTCTCAAGCCCCCTACTAATCtgaatatttcttttaaaa
actttcctGTCTATTCTGGTCTTGACAGTTTGAACACTTATAACCAGGAT
ATTGTTCCAGCAAATGATGATTGGTTTATTTTATAAACAAACGCAGGCGT
TCagctttattttcctttttaaaagaGAAGTTAAGGTTACAAGGTCGTTG
ATcacttaactttttttggtgtcGCCGGAGAATTCACACGGCtcgatttg
aaaaaattcaactttgtgtGCAGAGCCTCTCTTCTATTATTCTTTCTGAA
GAAGCCAATCAGCGAGAAGTTAAACATACTGGCTGTGTCTTTGTTTTCAT
tatgtttgttttgaattttttacgcgcaacctttttcttattttcaatgG
AAGAATAACAGCGCTCAGCGACCAAATCGCTCGAGCCATGTACGTTGTTG
GGCGACCAAATAAGCTAAGTGGACAACGACCTTAAATATAGAGATAAAAA
TTGAGATATAAATGAGATTGTCAAATGGTTCGGTTAAGAGAGCCCATGCa
atgattttgttgaaaataaaataaaacttgttGTCTTTCCTTATTACTTA
GATTggctaaaatagattttttcggAGGTAAATTAATTTGACGGATATGg
gtggaaaaaattaaattcggTTGAAGTTTTAATGGGTGGATAAAGTATTT
TTGGTCAAATATTGCCATTAAATAAGCAAAATATCTGTAAGGAAAGTGTA
CGAAATAATTTAGATTTTGTGGTAATTCATTTATGACGGTTGgcggaaat
ttttcaattttggttagAAAGTGTTAGAACAAATCTGCAAATTTATTCTA
TCGAAAGTGTGCGCGTGTTTACATTTGCCGTaatttggaatttgatcata
aGAGACTcaattttaatagcttttccattgtatttttcGCTAAATAACTT
TTAAAGGAATTATCTTTTTAGTGTGATTACGCAAAACGTGATTCCCTCAT
GTTCAAAACCTTAAATCTCAAATAAAAGGAATACTACAAGCAATTACTAA
TGACAAGCATGTGTAAACGCGTCCATTGTTTATCATAAGTGTAACAGTTT
AGTATATTGCCTAGAGGGCCCTAGAGAGTACTAAAAGATTATCTAGTTCT
GTATAAAAAGTAGTGTCGGATTTACGATAGataaaaacttgtaaaaagCA
GGTGAGATGTCAAAATGTTGATTAAAAACTTCTTCGTTTGTGTACAATGA
AATGTTATAACTGTCATTTTTGTTTAACTATCAAGAAACAAGAGGCATCT
CCTTTGTTTCTTGGGACTACAAAGAATCGAAATACAGAAAAATTCGGCTT
ATCTTGCATGCAGCTGTCAGATTTGCGATTTAACTTGGATCTACTATAAA
ATGATATGACTATATCATCCATGtcagtgatacaggggtgtaccCGTTTT
CGAGAAtttgatcttaattttttttctaggtcTTCTAGATAAAAAACATA
ACCAACATGGCAGATATTCCCGATGCAAAAGAACAATATATGAGACTCAA
CAATGAAATCAAACCGAGAtttgagaaattgaaaaatatagatCTATTCG
TCATCGATAACTCTATCCGTGAGTCCACTGTGGGTGCTCTTCGTGGACAC
ACACTGGAAAATAAATACAGCATTTTGAATGAGGTGAGGGAAACTTCAGT
AAGAGTTGAATAAAAGTCGTCGAAAAGCAAGAGTTTTCAGAATCATTGTG
GTCCATTTTTTGGGCTTGttttataatttctatcaaaaatATCGGAAAGA
AAAGCGTGCCTGGTCTATATTTTTTGTGACTAAGTGTGTGTGGTTACCGT
TTACTTTGATCATCCGCTTATGATGCTATTGAATTGTATGTAAATAAACT
TTTTAGATTTCCTAAAAGCCTCAAGAACTATATAAATTTGATCAAAACct
attttctttcctttcaatcATCCATTCGGATTAAAGCTATTTAAGAAACA
AATTTGAATCTATATATTTTATACTACAGACAAAGGAGCTTGGTTTCCAG
CATAACATCGTTGGAGCATTTTCACACTTGCGTAGAGTCGACGATGAATT
TATCACGCATCTCATCAAGAGTGGGGAAGATATGACCAACAAGTATGCCT
TCTCCGAATTTTATGACAGTTGTGACAAGAAAACACATTTACCTGTTCCC
GGTATCCCGATCGGATTACAAAAATGTAAAGAGCTTGGTGTCCCCAATGT
GATTATGGAGGTTGACTTGGCAAATCTAGCACCTGAAAGTCAATTCACCC
ATGAGAAGAGATGCCAACTCTTCCTAGAAAGATTCCAATGGATTCGTGAG
AATCTAAAGTCCCCAGGTAGGATTTTAATCAATTTACGTGATCTCCCAGC
TGCCATCATTAATCCAAAACTCCTTGATCTAGTCTTGGAGACAGTTGATT
TCCTATCTCGACATCGTCCTCAAATATTTGCTATCCTTACTGAGGAACCG
ACTGGTCAATACTTTCCTGAACAACTACGAAACATGACCAAGACAGTCAC
CGATCTGATGAAAGGAAATGGATACACCGGTCATTTCTTGGTCCACATTC
ATCAGCAATGGGGTCTACACAATGCTGGTAACTTAGAATGTCTTGCAAAT
GGTGCTACAGGGATTTGGTGCTCTGTATCCGAGGAAGGAGCCGCTCTTGG
ACATGCTTCGTCAGCATTAACAATTATGAATCTCATTCGACTTGGAAACA
CCAAAGTTCAAGAGCGTTATAACTGCAAATATATAAGAAAAGCTGCTCAG
AATATCACCCAGGTATTTATAAAATCTTCCTTTTGACATCCCTGTATGAA
TACTTTTTTGTCAGAATTTTCTCTCATTGTTAAAACAATTACATGGTAAT
TATAACTGAACGAAAAGTACTTCGGGTATTAGAAACGATTCACTTATTTT
CATAAGCCAAAGCCATTTACTTCTCAAACGATGGGAAAAAATTGTCAACA
ACAGAGGCAAACAGCCATTCTATTTCCGattttaaaacttcaaattcaat
cttttcaaGAAGACATATAGTACAGTCACTGACAATGAGAATCACCCCTC
TTTTTTCAGGTTGTATCGGGCAAACCCGCCCATCCAAAAACACCAGTTTA
TGGTGCTAGAGCTGTTGATCAAGTCTTTGGTCTCAGTGGAATGGGCGGTA
ATGTGGGCGGATTTGGTAATATGGACCTTGCCGAGTTTTTCGATATCACC
AAAACAATGCGAATTACCACACTTGCATCAAATGATATGATTGTTACCAG
GTTTGTAATCATTCTTTTCACTTTGTTAAAAGTCTCTCGCAAATGACTCT
AAAGATGATGAGcaaaatcatattttttaataattcttTTGTACATTTTC
GTTTTCAAACCACCCACcctaaaaaatgcaaaaatttaaaGTTGAATTAA
ACGAAAACGATTGATACCATCGGACAGAGGCATGAATATCTGGGCAAGAG
AAGTACTATTATAAGGTTTGCCCCCCATCAGTATGTACAACTATGTTTGA
AAAGTATATACTGAGGTATTCTCAAAACCAGCTTTTACTACCACGACCAT
ACTTAGAGTTTCAGATGCCGGAGAAAATATAATCATTGTAAATattattc
tttcattttacaCAATAGATTGACCCGTTTGTTTGGCGAGGATCCTAATT
TCACTGAAGCAAGAGCGGAGCTGATGAAACAGCAAATGTTGGATGATTAC
AAGAACAACAAGAAAGAGGAATACCACAGTCCTATTGGATTAATCACATT
GTTTGATAAAGCTGGAGGTAAAAAGACTCCAGCAATGTTGAAAGCACTTC
AAgaggtttgtttatttttactaTTCGTCAATTCTTTACACACTTTATAG
AATTGACTTCGttttaatacacccctgtgtcacaagaCTCGAGACTGGGA
CTCCAGCCGCACTGGAAAaaagactttgatttcatccccattcgaaattc
aatgtttataaATTGTACTCtgaaaccatccccactggatttttaacctt
ggaacaatagaatattATCCCCACTAGGGGTGTATTAATTGAGTCATTGA
GGCACGACAtaaaaaacttttcataaattacatcacgTGCAatgcttacc
tcgttttcaaaatgttaCTATGGNCATTCTTTTCACTTTGTTAAAAGTCT
CTCGCAAATGACTCTAAAGATGATGAGcaaaatcatattttttaataatt
cttTTGTACATTTTCGTTTTCAAACCACCCACcctaaaaaatgcaaaaat
ttaaaGTTGAATTAAACGAAAACGATTGATACCATCGGACAGAGGCATGA
ATATCTGGGCAAGAGAAGTACTATTATAAGGTTTGCCCCCCATCAGTATG
TACAACTATGTTTGAAAAGTATATACTGAGGTATTCTCAAAACCAGCTTT
TACTACCACGACCATACTTAGAGTTTCAGATGCCGGAGAAAATATAATCA
TTGTAAATattattctttcattttacaCAATAGATTGACCCGTTTGTTTG
GCGAGGATCCTAATTTCACTGAAGCAAGAGCGGAGCTGATGAAACAGCAA
ATGTTGGATGATTACAAGAACAACAAGAAAGAGGAATACCACAGTCCTAT
TGGATTAATCACATTGTTTGATAAAGCTGGAGGTAAAAAGACTCCAGCAA
TGTTGAAAGCACTTCAAgaggtttgtttatttttactaTTCGTCAATTCT
TTACACACTTTATAGAATTGACTTCGttttaatacacccctgtgtcacaa
gaCTCGAGACTGGGACTCCAGCCGCACTGGAAAaaagactttgatttcat
ccccattcgaaattcaatgtttataaATTGTACTCtgaaaccatccccac
tggatttttaaccttggaacaatagaatattATCCCCACTAGGGGTGTAT
TAATTGAGTCATTGAGGCACGACAtaaaaaacttttcataaattacatca
cgTGCAatgcttacctcgttttcaaaatgttaCTATGGTAATTGTTTCTC
AGATGAGTCCGAAGAAGTTTATTTAATATACAAAAATAACACCTTAACTC
TCGAAAGttttaatcaccttggtaatggtgACAAATAAAGGTAGTCGTTG
AACTCAAaatgatttatgaaaaggcctattctttaaagggacataaaagt
actttcgaaatttgtaaacaaaccgtatgcaacAACAACCATATATGACA
AGACAAAACACGTCGTCGTTGTAACATAATCAGACACCAAGTGCAATTCC
tactaaaaaatctttttaatttctAGTATGAAGTCCAATCGTTGCATATC
CAAGAGCTGATCGAAGAGATTCACGACCTTTGGAAGTTGTGGGATTCTTC
AGACGGCAATTTAGATGGAAACATCACATTCGATAATTTCTATAACGCCT
TCATGAACGAATACTTCGGTTGTTACAGATGTACGCAAACTCAACAAGCA
CTTCAAGCTATTAATGTTGTTGATGATGATGTCATCTCTTGGGATGAGTT
TTCCATCTTTTTGAAATGGGCTGGTAAAGAATATCCGCAAGTTGAAGACG
CAGAAGCTTTACTGGAGAAAGCTTTCTTGGAAGGTATTGTACCAGCAATG
CAAGATGAAGTTATCAAGAGTGCCAAATCTGGCAAAAGTCTTTTCCACGA
TCCACATAATTTCTAAATGAATTACTGTAATGGAATTTGATGCATAGACT
CTTAgaattaaattattttgttcTAACAATTATTATTTATTTCGAATTGT
ATTAAAGTCACACGTCACAAGAAGATGAAATTCACCTATAAATCTTGCCA
CCAAAAGGATTTCAGGTTGGAGTTGAcgaaattatattttattaggaAAC
TCGACTCCATTTCTCTTTCATCCAGGTTGATAGATGTATTGACGCACTTA
AGGTTTATTATGCCCCTGATACACatcttatttataaaaaatccGTACAT
ATAATTTATATTTAACATTTGTATTTTCTCAAATGCTGAATATAAACATC
CTTAAAAACGAAAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009443-exon-sc0000095-1491911889:112563..112724 | TCONS_00009443-exon-sc0000095-1491911889:112563..112724 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1510915933:112563..112724 | TCONS_00009443-exon-sc0000095-1510915933:112563..112724 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1575043694:112563..112724 | TCONS_00009443-exon-sc0000095-1575043694:112563..112724 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1491911889:115142..115345 | TCONS_00009443-exon-sc0000095-1491911889:115142..115345 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1510915933:115142..115345 | TCONS_00009443-exon-sc0000095-1510915933:115142..115345 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1575043694:115142..115345 | TCONS_00009443-exon-sc0000095-1575043694:115142..115345 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1491911889:115692..116474 | TCONS_00009443-exon-sc0000095-1491911889:115692..116474 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1510915933:115692..116474 | TCONS_00009443-exon-sc0000095-1510915933:115692..116474 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1575043694:115692..116474 | TCONS_00009443-exon-sc0000095-1575043694:115692..116474 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1491911889:116772..116962 | TCONS_00009443-exon-sc0000095-1491911889:116772..116962 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1510915933:116772..116962 | TCONS_00009443-exon-sc0000095-1510915933:116772..116962 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1575043694:116772..116962 | TCONS_00009443-exon-sc0000095-1575043694:116772..116962 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1491911889:118196..118382 | TCONS_00009443-exon-sc0000095-1491911889:118196..118382 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1510915933:118196..118382 | TCONS_00009443-exon-sc0000095-1510915933:118196..118382 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1575043694:118196..118382 | TCONS_00009443-exon-sc0000095-1575043694:118196..118382 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1491911889:118989..119729 | TCONS_00009443-exon-sc0000095-1491911889:118989..119729 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1510915933:118989..119729 | TCONS_00009443-exon-sc0000095-1510915933:118989..119729 | Clytia hemisphaerica | exon |
TCONS_00009443-exon-sc0000095-1575043694:118989..119729 | TCONS_00009443-exon-sc0000095-1575043694:118989..119729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000095 | supercontig | sc0000095:112563..119729 + |
Blast
The following BLAST results are available for this feature:
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