TCONS_00009443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009443
Unique NameTCONS_00009443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009443 ID=TCONS_00009443|Name=TCONS_00009443|organism=Clytia hemisphaerica|type=transcript|length=2268bp
TTTTTGATTAGGTGTTTATCTATGCTCAGTCGAGGGAAGGAAACGCAAGG
TCGAACGGATTATTTTGTTTTCCAGTCTTTGAGTTTGTTTTATTTAAGGA
GAATAAAACCATTTCTGCAATCATTTTCTATCTTTACTCGAGATTAAAGA
TACACAGCCGAGgtcTTCTAGATAAAAAACATAACCAACATGGCAGATAT
TCCCGATGCAAAAGAACAATATATGAGACTCAACAATGAAATCAAACCGA
GAtttgagaaattgaaaaatatagatCTATTCGTCATCGATAACTCTATC
CGTGAGTCCACTGTGGGTGCTCTTCGTGGACACACACTGGAAAATAAATA
CAGCATTTTGAATGAGACAAAGGAGCTTGGTTTCCAGCATAACATCGTTG
GAGCATTTTCACACTTGCGTAGAGTCGACGATGAATTTATCACGCATCTC
ATCAAGAGTGGGGAAGATATGACCAACAAGTATGCCTTCTCCGAATTTTA
TGACAGTTGTGACAAGAAAACACATTTACCTGTTCCCGGTATCCCGATCG
GATTACAAAAATGTAAAGAGCTTGGTGTCCCCAATGTGATTATGGAGGTT
GACTTGGCAAATCTAGCACCTGAAAGTCAATTCACCCATGAGAAGAGATG
CCAACTCTTCCTAGAAAGATTCCAATGGATTCGTGAGAATCTAAAGTCCC
CAGGTAGGATTTTAATCAATTTACGTGATCTCCCAGCTGCCATCATTAAT
CCAAAACTCCTTGATCTAGTCTTGGAGACAGTTGATTTCCTATCTCGACA
TCGTCCTCAAATATTTGCTATCCTTACTGAGGAACCGACTGGTCAATACT
TTCCTGAACAACTACGAAACATGACCAAGACAGTCACCGATCTGATGAAA
GGAAATGGATACACCGGTCATTTCTTGGTCCACATTCATCAGCAATGGGG
TCTACACAATGCTGGTAACTTAGAATGTCTTGCAAATGGTGCTACAGGGA
TTTGGTGCTCTGTATCCGAGGAAGGAGCCGCTCTTGGACATGCTTCGTCA
GCATTAACAATTATGAATCTCATTCGACTTGGAAACACCAAAGTTCAAGA
GCGTTATAACTGCAAATATATAAGAAAAGCTGCTCAGAATATCACCCAGG
TTGTATCGGGCAAACCCGCCCATCCAAAAACACCAGTTTATGGTGCTAGA
GCTGTTGATCAAGTCTTTGGTCTCAGTGGAATGGGCGGTAATGTGGGCGG
ATTTGGTAATATGGACCTTGCCGAGTTTTTCGATATCACCAAAACAATGC
GAATTACCACACTTGCATCAAATGATATGATTGTTACCAGATTGACCCGT
TTGTTTGGCGAGGATCCTAATTTCACTGAAGCAAGAGCGGAGCTGATGAA
ACAGCAAATGTTGGATGATTACAAGAACAACAAGAAAGAGGAATACCACA
GTCCTATTGGATTAATCACATTGTTTGATAAAGCTGGAGGTAAAAAGACT
CCAGCAATGTTGAAAGCACTTCAAgagTATGAAGTCCAATCGTTGCATAT
CCAAGAGCTGATCGAAGAGATTCACGACCTTTGGAAGTTGTGGGATTCTT
CAGACGGCAATTTAGATGGAAACATCACATTCGATAATTTCTATAACGCC
TTCATGAACGAATACTTCGGTTGTTACAGATGTACGCAAACTCAACAAGC
ACTTCAAGCTATTAATGTTGTTGATGATGATGTCATCTCTTGGGATGAGT
TTTCCATCTTTTTGAAATGGGCTGGTAAAGAATATCCGCAAGTTGAAGAC
GCAGAAGCTTTACTGGAGAAAGCTTTCTTGGAAGGTATTGTACCAGCAAT
GCAAGATGAAGTTATCAAGAGTGCCAAATCTGGCAAAAGTCTTTTCCACG
ATCCACATAATTTCTAAATGAATTACTGTAATGGAATTTGATGCATAGAC
TCTTAgaattaaattattttgttcTAACAATTATTATTTATTTCGAATTG
TATTAAAGTCACACGTCACAAGAAGATGAAATTCACCTATAAATCTTGCC
ACCAAAAGGATTTCAGGTTGGAGTTGAcgaaattatattttattaggaAA
CTCGACTCCATTTCTCTTTCATCCAGGTTGATAGATGTATTGACGCACTT
AAGGTTTATTATGCCCCTGATACACatcttatttataaaaaatccGTACA
TATAATTTATATTTAACATTTGTATTTTCTCAAATGCTGAATATAAACAT
CCTTAAAAACGAAAAACT
Run BLAST on NCBI

transcript from alignment at sc0000095:112563..119729+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009443 ID=TCONS_00009443|Name=TCONS_00009443|organism=Clytia hemisphaerica|type=transcript|length=7167bp|location=Sequence derived from alignment at sc0000095:112563..119729+ (Clytia hemisphaerica)
TTTTTGATTAGGTGTTTATCTATGCTCAGTCGAGGGAAGGAAACGCAAGG TCGAACGGATTATTTTGTTTTCCAGTCTTTGAGTTTGTTTTATTTAAGGA GAATAAAACCATTTCTGCAATCATTTTCTATCTTTACTCGAGATTAAAGA TACACAGCCGAGGTAGGTCAATGGAAGTAAGTAAGTCTTGAAAATATCTT TACAACTATGTAATAAAGTGCATTGGTATGAATTTAATTTGACAGAtggt caaaaaagttttatacaTGGAATTGAATTTAATAGCAAGTAGCACCGGGA TTTTTCTTTCCATTTCTTAGTGAGTTTTACTTTGATgaattctgaaaaat agaagccttttaGATGTTCTGACGTAAATTCACGCAAAGTGGAATGGGCG TTACTGCGTAGAAAAAAAGCCGTGACTTCTAGTATAATAATTTCGTTGGa aggcttgaaaatgaaatttggcaGGAATGCAGGTTCTTAGTATGTTCGTT TATTTCTTTATAGAAATGCTGACAAATTTTTACAGATCCGTCTCTTTCCA CAAAGATTTCTACCAAAATATTCTGTCCAGGAAATATCCAGTCGGAAAGA TGTCCGTTAGTATAAAATCTGTTTGGGAAACATTCGTTAGGAAAAGTTTC CGGGtataatttgagaaaaattcgtAAAAGGTAATACTCTTCGGTaaaag tcccggggggggggttNTTTTTTGGTCAAATATTGCCATTAAATAAGCAA ATATCTGTAAGGAAAGTGTACGAAATAATTTAGATTTTGTGGTAATTCAT TTATGACGGTTGgcggaaatttttcaattttggttagAAANTATAAAATC TGTTTGGGAAACATTCGTTAGGAAAAGTTTCCGGGtataatttgagaaaa attcgtAAAAGGTAATACTCTTCGGTaaaagtcccggggggggggttagt TAGgaaaaattgggtacggggacgtgcggCTCGTCAGAGTCTtcttttag gctctgaagatatctgacagggtccaaaatttactgattttcAAGCCCAT CCCgcataaaatgattttgaagttTCGCTTAGGCTCATCAACAAAATATG TTGGAAAAAAACTCTCAAGCCCCCTACTAATCtgaatatttcttttaaaa actttcctGTCTATTCTGGTCTTGACAGTTTGAACACTTATAACCAGGAT ATTGTTCCAGCAAATGATGATTGGTTTATTTTATAAACAAACGCAGGCGT TCagctttattttcctttttaaaagaGAAGTTAAGGTTACAAGGTCGTTG ATcacttaactttttttggtgtcGCCGGAGAATTCACACGGCtcgatttg aaaaaattcaactttgtgtGCAGAGCCTCTCTTCTATTATTCTTTCTGAA GAAGCCAATCAGCGAGAAGTTAAACATACTGGCTGTGTCTTTGTTTTCAT tatgtttgttttgaattttttacgcgcaacctttttcttattttcaatgG AAGAATAACAGCGCTCAGCGACCAAATCGCTCGAGCCATGTACGTTGTTG GGCGACCAAATAAGCTAAGTGGACAACGACCTTAAATATAGAGATAAAAA TTGAGATATAAATGAGATTGTCAAATGGTTCGGTTAAGAGAGCCCATGCa atgattttgttgaaaataaaataaaacttgttGTCTTTCCTTATTACTTA GATTggctaaaatagattttttcggAGGTAAATTAATTTGACGGATATGg gtggaaaaaattaaattcggTTGAAGTTTTAATGGGTGGATAAAGTATTT TTGGTCAAATATTGCCATTAAATAAGCAAAATATCTGTAAGGAAAGTGTA CGAAATAATTTAGATTTTGTGGTAATTCATTTATGACGGTTGgcggaaat ttttcaattttggttagAAAGTGTTAGAACAAATCTGCAAATTTATTCTA TCGAAAGTGTGCGCGTGTTTACATTTGCCGTaatttggaatttgatcata aGAGACTcaattttaatagcttttccattgtatttttcGCTAAATAACTT TTAAAGGAATTATCTTTTTAGTGTGATTACGCAAAACGTGATTCCCTCAT GTTCAAAACCTTAAATCTCAAATAAAAGGAATACTACAAGCAATTACTAA TGACAAGCATGTGTAAACGCGTCCATTGTTTATCATAAGTGTAACAGTTT AGTATATTGCCTAGAGGGCCCTAGAGAGTACTAAAAGATTATCTAGTTCT GTATAAAAAGTAGTGTCGGATTTACGATAGataaaaacttgtaaaaagCA GGTGAGATGTCAAAATGTTGATTAAAAACTTCTTCGTTTGTGTACAATGA AATGTTATAACTGTCATTTTTGTTTAACTATCAAGAAACAAGAGGCATCT CCTTTGTTTCTTGGGACTACAAAGAATCGAAATACAGAAAAATTCGGCTT ATCTTGCATGCAGCTGTCAGATTTGCGATTTAACTTGGATCTACTATAAA ATGATATGACTATATCATCCATGtcagtgatacaggggtgtaccCGTTTT CGAGAAtttgatcttaattttttttctaggtcTTCTAGATAAAAAACATA ACCAACATGGCAGATATTCCCGATGCAAAAGAACAATATATGAGACTCAA CAATGAAATCAAACCGAGAtttgagaaattgaaaaatatagatCTATTCG TCATCGATAACTCTATCCGTGAGTCCACTGTGGGTGCTCTTCGTGGACAC ACACTGGAAAATAAATACAGCATTTTGAATGAGGTGAGGGAAACTTCAGT AAGAGTTGAATAAAAGTCGTCGAAAAGCAAGAGTTTTCAGAATCATTGTG GTCCATTTTTTGGGCTTGttttataatttctatcaaaaatATCGGAAAGA AAAGCGTGCCTGGTCTATATTTTTTGTGACTAAGTGTGTGTGGTTACCGT TTACTTTGATCATCCGCTTATGATGCTATTGAATTGTATGTAAATAAACT TTTTAGATTTCCTAAAAGCCTCAAGAACTATATAAATTTGATCAAAACct attttctttcctttcaatcATCCATTCGGATTAAAGCTATTTAAGAAACA AATTTGAATCTATATATTTTATACTACAGACAAAGGAGCTTGGTTTCCAG CATAACATCGTTGGAGCATTTTCACACTTGCGTAGAGTCGACGATGAATT TATCACGCATCTCATCAAGAGTGGGGAAGATATGACCAACAAGTATGCCT TCTCCGAATTTTATGACAGTTGTGACAAGAAAACACATTTACCTGTTCCC GGTATCCCGATCGGATTACAAAAATGTAAAGAGCTTGGTGTCCCCAATGT GATTATGGAGGTTGACTTGGCAAATCTAGCACCTGAAAGTCAATTCACCC ATGAGAAGAGATGCCAACTCTTCCTAGAAAGATTCCAATGGATTCGTGAG AATCTAAAGTCCCCAGGTAGGATTTTAATCAATTTACGTGATCTCCCAGC TGCCATCATTAATCCAAAACTCCTTGATCTAGTCTTGGAGACAGTTGATT TCCTATCTCGACATCGTCCTCAAATATTTGCTATCCTTACTGAGGAACCG ACTGGTCAATACTTTCCTGAACAACTACGAAACATGACCAAGACAGTCAC CGATCTGATGAAAGGAAATGGATACACCGGTCATTTCTTGGTCCACATTC ATCAGCAATGGGGTCTACACAATGCTGGTAACTTAGAATGTCTTGCAAAT GGTGCTACAGGGATTTGGTGCTCTGTATCCGAGGAAGGAGCCGCTCTTGG ACATGCTTCGTCAGCATTAACAATTATGAATCTCATTCGACTTGGAAACA CCAAAGTTCAAGAGCGTTATAACTGCAAATATATAAGAAAAGCTGCTCAG AATATCACCCAGGTATTTATAAAATCTTCCTTTTGACATCCCTGTATGAA TACTTTTTTGTCAGAATTTTCTCTCATTGTTAAAACAATTACATGGTAAT TATAACTGAACGAAAAGTACTTCGGGTATTAGAAACGATTCACTTATTTT CATAAGCCAAAGCCATTTACTTCTCAAACGATGGGAAAAAATTGTCAACA ACAGAGGCAAACAGCCATTCTATTTCCGattttaaaacttcaaattcaat cttttcaaGAAGACATATAGTACAGTCACTGACAATGAGAATCACCCCTC TTTTTTCAGGTTGTATCGGGCAAACCCGCCCATCCAAAAACACCAGTTTA TGGTGCTAGAGCTGTTGATCAAGTCTTTGGTCTCAGTGGAATGGGCGGTA ATGTGGGCGGATTTGGTAATATGGACCTTGCCGAGTTTTTCGATATCACC AAAACAATGCGAATTACCACACTTGCATCAAATGATATGATTGTTACCAG GTTTGTAATCATTCTTTTCACTTTGTTAAAAGTCTCTCGCAAATGACTCT AAAGATGATGAGcaaaatcatattttttaataattcttTTGTACATTTTC GTTTTCAAACCACCCACcctaaaaaatgcaaaaatttaaaGTTGAATTAA ACGAAAACGATTGATACCATCGGACAGAGGCATGAATATCTGGGCAAGAG AAGTACTATTATAAGGTTTGCCCCCCATCAGTATGTACAACTATGTTTGA AAAGTATATACTGAGGTATTCTCAAAACCAGCTTTTACTACCACGACCAT ACTTAGAGTTTCAGATGCCGGAGAAAATATAATCATTGTAAATattattc tttcattttacaCAATAGATTGACCCGTTTGTTTGGCGAGGATCCTAATT TCACTGAAGCAAGAGCGGAGCTGATGAAACAGCAAATGTTGGATGATTAC AAGAACAACAAGAAAGAGGAATACCACAGTCCTATTGGATTAATCACATT GTTTGATAAAGCTGGAGGTAAAAAGACTCCAGCAATGTTGAAAGCACTTC AAgaggtttgtttatttttactaTTCGTCAATTCTTTACACACTTTATAG AATTGACTTCGttttaatacacccctgtgtcacaagaCTCGAGACTGGGA CTCCAGCCGCACTGGAAAaaagactttgatttcatccccattcgaaattc aatgtttataaATTGTACTCtgaaaccatccccactggatttttaacctt ggaacaatagaatattATCCCCACTAGGGGTGTATTAATTGAGTCATTGA GGCACGACAtaaaaaacttttcataaattacatcacgTGCAatgcttacc tcgttttcaaaatgttaCTATGGNCATTCTTTTCACTTTGTTAAAAGTCT CTCGCAAATGACTCTAAAGATGATGAGcaaaatcatattttttaataatt cttTTGTACATTTTCGTTTTCAAACCACCCACcctaaaaaatgcaaaaat ttaaaGTTGAATTAAACGAAAACGATTGATACCATCGGACAGAGGCATGA ATATCTGGGCAAGAGAAGTACTATTATAAGGTTTGCCCCCCATCAGTATG TACAACTATGTTTGAAAAGTATATACTGAGGTATTCTCAAAACCAGCTTT TACTACCACGACCATACTTAGAGTTTCAGATGCCGGAGAAAATATAATCA TTGTAAATattattctttcattttacaCAATAGATTGACCCGTTTGTTTG GCGAGGATCCTAATTTCACTGAAGCAAGAGCGGAGCTGATGAAACAGCAA ATGTTGGATGATTACAAGAACAACAAGAAAGAGGAATACCACAGTCCTAT TGGATTAATCACATTGTTTGATAAAGCTGGAGGTAAAAAGACTCCAGCAA TGTTGAAAGCACTTCAAgaggtttgtttatttttactaTTCGTCAATTCT TTACACACTTTATAGAATTGACTTCGttttaatacacccctgtgtcacaa gaCTCGAGACTGGGACTCCAGCCGCACTGGAAAaaagactttgatttcat ccccattcgaaattcaatgtttataaATTGTACTCtgaaaccatccccac tggatttttaaccttggaacaatagaatattATCCCCACTAGGGGTGTAT TAATTGAGTCATTGAGGCACGACAtaaaaaacttttcataaattacatca cgTGCAatgcttacctcgttttcaaaatgttaCTATGGTAATTGTTTCTC AGATGAGTCCGAAGAAGTTTATTTAATATACAAAAATAACACCTTAACTC TCGAAAGttttaatcaccttggtaatggtgACAAATAAAGGTAGTCGTTG AACTCAAaatgatttatgaaaaggcctattctttaaagggacataaaagt actttcgaaatttgtaaacaaaccgtatgcaacAACAACCATATATGACA AGACAAAACACGTCGTCGTTGTAACATAATCAGACACCAAGTGCAATTCC tactaaaaaatctttttaatttctAGTATGAAGTCCAATCGTTGCATATC CAAGAGCTGATCGAAGAGATTCACGACCTTTGGAAGTTGTGGGATTCTTC AGACGGCAATTTAGATGGAAACATCACATTCGATAATTTCTATAACGCCT TCATGAACGAATACTTCGGTTGTTACAGATGTACGCAAACTCAACAAGCA CTTCAAGCTATTAATGTTGTTGATGATGATGTCATCTCTTGGGATGAGTT TTCCATCTTTTTGAAATGGGCTGGTAAAGAATATCCGCAAGTTGAAGACG CAGAAGCTTTACTGGAGAAAGCTTTCTTGGAAGGTATTGTACCAGCAATG CAAGATGAAGTTATCAAGAGTGCCAAATCTGGCAAAAGTCTTTTCCACGA TCCACATAATTTCTAAATGAATTACTGTAATGGAATTTGATGCATAGACT CTTAgaattaaattattttgttcTAACAATTATTATTTATTTCGAATTGT ATTAAAGTCACACGTCACAAGAAGATGAAATTCACCTATAAATCTTGCCA CCAAAAGGATTTCAGGTTGGAGTTGAcgaaattatattttattaggaAAC TCGACTCCATTTCTCTTTCATCCAGGTTGATAGATGTATTGACGCACTTA AGGTTTATTATGCCCCTGATACACatcttatttataaaaaatccGTACAT ATAATTTATATTTAACATTTGTATTTTCTCAAATGCTGAATATAAACATC CTTAAAAACGAAAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005296XLOC_005296Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009443-exon-sc0000095-1491911889:112563..112724TCONS_00009443-exon-sc0000095-1491911889:112563..112724Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1510915933:112563..112724TCONS_00009443-exon-sc0000095-1510915933:112563..112724Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1575043694:112563..112724TCONS_00009443-exon-sc0000095-1575043694:112563..112724Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1491911889:115142..115345TCONS_00009443-exon-sc0000095-1491911889:115142..115345Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1510915933:115142..115345TCONS_00009443-exon-sc0000095-1510915933:115142..115345Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1575043694:115142..115345TCONS_00009443-exon-sc0000095-1575043694:115142..115345Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1491911889:115692..116474TCONS_00009443-exon-sc0000095-1491911889:115692..116474Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1510915933:115692..116474TCONS_00009443-exon-sc0000095-1510915933:115692..116474Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1575043694:115692..116474TCONS_00009443-exon-sc0000095-1575043694:115692..116474Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1491911889:116772..116962TCONS_00009443-exon-sc0000095-1491911889:116772..116962Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1510915933:116772..116962TCONS_00009443-exon-sc0000095-1510915933:116772..116962Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1575043694:116772..116962TCONS_00009443-exon-sc0000095-1575043694:116772..116962Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1491911889:118196..118382TCONS_00009443-exon-sc0000095-1491911889:118196..118382Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1510915933:118196..118382TCONS_00009443-exon-sc0000095-1510915933:118196..118382Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1575043694:118196..118382TCONS_00009443-exon-sc0000095-1575043694:118196..118382Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1491911889:118989..119729TCONS_00009443-exon-sc0000095-1491911889:118989..119729Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1510915933:118989..119729TCONS_00009443-exon-sc0000095-1510915933:118989..119729Clytia hemisphaericaexon
TCONS_00009443-exon-sc0000095-1575043694:118989..119729TCONS_00009443-exon-sc0000095-1575043694:118989..119729Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:112563..119729 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
363.897 375.92 291.857 260.569 2.52696 1.86371 1.60606 1.80429 1.3685 1.56471 1.26562 0.998365 3.73867 3.6238 2.51999 4.00556 0 0 16.9616 22.0575 0.362344 0.176739 131.917 120.192 0.134123 0.119701 5.82394 5.30143 70.8518 72.7519
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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