TCONS_00009434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009434
Unique NameTCONS_00009434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009434 ID=TCONS_00009434|Name=TCONS_00009434|organism=Clytia hemisphaerica|type=transcript|length=862bp
attattcaacattttagtaaacaaaaaaatgtctaTGACTTATCATTTCA
ATAATATGATATCATGACTTAACattgcaaaaaaatatataatttcataa
CTTAATTACTAGTTTACATAGGTACCAATCAAAAATCACtgctttattta
taaacaaaaagatAATCTGTAAGAGCATAGTGTACAGCCATGTCATCCTT
ATTTAGCTGAATTTCTATGAATGCTTCACCATTACCAATAAAAACACTCt
ataaaaaagtgtgcaaaCCCAGTCTTGTGTTTCATATCTGGCAGGTGTTA
CTTCTTCTGCTTCTTTGCATTCCAAGGTACTGATATCACCTTTTTAGGAA
GGAAGATGTCTCTTAGAATCAAACCAAACTTTTTTGAATGTTATAATGTA
GAAGAAGTTGAAGAATGACCAGTCAGTTAAGAAATTTTCAGCGAAGGATT
GAGAACTCAAAGCAGTAGCAATTGTCCAGAGTAGAAGGTAGAGCTTTATA
CAACTTTGGGGAACAGTTTGAAGTCCAGCGGTTGTGTGTGACATCAAGTT
TTTAGCAGGATGATTTGTACGTACAATATATAGCTGATGATGAAGAGCAG
AAATTGGATCTTGTTGCTTGGTTGTAGcatttgaaattggaaaaataaat
aaagatttcttcTGTTATGCTTTGGCAGGTGGAGGGGTAAATTTCTTTGA
GCTTGGCAGAGCAGTCTTTTTCTCGTGTTTGTAGCTTTGCTTTGACATAT
TATAACTTTGGCTTCTTCGCACTTGATGGTGGCACCAcagaaacactgaa
aaacatgaaaaagaaatatggttacATGCTGTTCATTGTAATGGTTACTT
TGGATGTATTTG
Run BLAST on NCBI

transcript from alignment at sc0000093:555111..555972

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009434 ID=TCONS_00009434|Name=TCONS_00009434|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at sc0000093:555111..555972 (Clytia hemisphaerica)
CAAATACATCCAAAGTAACCATTACAATGAACAGCATgtaaccatatttc
tttttcatgtttttcagtgtttctgTGGTGCCACCATCAAGTGCGAAGAA
GCCAAAGTTATAATATGTCAAAGCAAAGCTACAAACACGAGAAAAAGACT
GCTCTGCCAAGCTCAAAGAAATTTACCCCTCCACCTGCCAAAGCATAACA
gaagaaatctttatttatttttccaatttcaaatgCTACAACCAAGCAAC
AAGATCCAATTTCTGCTCTTCATCATCAGCTATATATTGTACGTACAAAT
CATCCTGCTAAAAACTTGATGTCACACACAACCGCTGGACTTCAAACTGT
TCCCCAAAGTTGTATAAAGCTCTACCTTCTACTCTGGACAATTGCTACTG
CTTTGAGTTCTCAATCCTTCGCTGAAAATTTCTTAACTGACTGGTCATTC
TTCAACTTCTTCTACATTATAACATTCAAAAAAGTTTGGTTTGATTCTAA
GAGACATCTTCCTTCCTAAAAAGGTGATATCAGTACCTTGGAATGCAAAG
AAGCAGAAGAAGTAACACCTGCCAGATATGAAACACAAGACTGGGtttgc
acacttttttataGAGTGTTTTTATTGGTAATGGTGAAGCATTCATAGAA
ATTCAGCTAAATAAGGATGACATGGCTGTACACTATGCTCTTACAGATTa
tctttttgtttataaataaagcaGTGATTTTTGATTGGTACCTATGTAAA
CTAGTAATTAAGttatgaaattatatatttttttgcaatGTTAAGTCATG
ATATCATATTATTGAAATGATAAGTCAtagacatttttttgtttactaaa
atgttgaataat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005290XLOC_005290Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009434-exon-sc0000093-1491911889:555111..555972TCONS_00009434-exon-sc0000093-1491911889:555111..555972Clytia hemisphaericaexon
TCONS_00009434-exon-sc0000093-1510915933:555111..555972TCONS_00009434-exon-sc0000093-1510915933:555111..555972Clytia hemisphaericaexon
TCONS_00009434-exon-sc0000093-1575043694:555111..555972TCONS_00009434-exon-sc0000093-1575043694:555111..555972Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:555111..555972 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.109304	0.286764	0.312142	0.15379	0.240077	0.0796547	0.209537	0.642321	0.585716	0.172163	0.810103	0.19792	0.525556	0.177434	0.105305	0.142111	0.193224	0.240231	0.285538	0.282265	0.339849	0.205515	0.376025	0	0.22945	0.255706	0	0.298449	0.135544
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top