TCONS_00009433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009433
Unique NameTCONS_00009433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009433 ID=TCONS_00009433|Name=TCONS_00009433|organism=Clytia hemisphaerica|type=transcript|length=306bp
TCCATCCCCCTTGCTTGGATTTTTCACAACACCCTGCCAAAGCGATATGG
ATTGTATGCCTCTTTTTTTTGTCTGTTGCCATAAAGTATATCAATCATGA
TGAAAAGATGTACATTGTTACGACCGTCGACATGGCccgcccgagaattc
tcgggcctcttcgggccgagagaccctatcaattcttttggcccgaacat
gacccgagtcattcgggccatgttcagGCCTCATTTTTCATAACGCTTTT
AAGCCTGTCTGGCTGGGTCCATTGAGTCTAATCTAAGTACGGAGTAGGGG
CGAAGG
Run BLAST on NCBI

transcript from alignment at sc0000093:542867..543172

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009433 ID=TCONS_00009433|Name=TCONS_00009433|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at sc0000093:542867..543172 (Clytia hemisphaerica)
CCTTCGCCCCTACTCCGTACTTAGATTAGACTCAATGGACCCAGCCAGAC
AGGCTTAAAAGCGTTATGAAAAATGAGGCctgaacatggcccgaatgact
cgggtcatgttcgggccaaaagaattgatagggtctctcggcccgaagag
gcccgagaattctcgggcggGCCATGTCGACGGTCGTAACAATGTACATC
TTTTCATCATGATTGATATACTTTATGGCAACAGACAAAAAAAAGAGGCA
TACAATCCATATCGCTTTGGCAGGGTGTTGTGAAAAATCCAAGCAAGGGG
GATGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005289XLOC_005289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009433-exon-sc0000093-1491911889:542867..543172TCONS_00009433-exon-sc0000093-1491911889:542867..543172Clytia hemisphaericaexon
TCONS_00009433-exon-sc0000093-1510915933:542867..543172TCONS_00009433-exon-sc0000093-1510915933:542867..543172Clytia hemisphaericaexon
TCONS_00009433-exon-sc0000093-1575043694:542867..543172TCONS_00009433-exon-sc0000093-1575043694:542867..543172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:542867..543172 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.49152	7.40595	16.849	16.8795	21.1172	11.1417	13.1572	13.1975	23.3579	25.0762	16.293	24.4311	16.4671	19.3806	15.773	17.5589	20.841	16.0129	12.3888	19.0379	11.3082	6.7223	3.35255	4.95293	20.4056	22.7644	12.028	10.1623	9.33042	8.21928
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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