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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009431 ID=TCONS_00009431|Name=TCONS_00009431|organism=Clytia hemisphaerica|type=transcript|length=1338bp
AagtaaaagtgaaaaaaaaacttttgttttcatgtcttTTTGCCCTCTTT
actgatatttttttgtaaaaaagtagGCTGCATTTTGGTGGTAGAACTCA
GAAATTATTCCCATAAGGAATGCTGGATTTTGATTAGACTCTCGTACTCT
TAAAAATAAAGATCATTTCCTATTCTTGTTAATATCCTTGTTTTTTAAAG
AGAGCTCATCAGATCATTCAATATCcttttaaagagaaagtatgaCATTA
TAGGTATACGTTagtttttagtaaaaaataataGTGAGATAATATAAATA
ACAATGTGGTATTATTTTGTTGCTCATGTGGCCTATCATTTCACTCGATG
GTTTCCAAAATCAAACCGACGTGGTGTGCGTATGTTTATCATATTCATAT
CATTACTCTTCATCATTCCGCAATTCATTGTATTGATTGATAAAGCCAGC
GGGAGATATTGTGATCAACCTTTACTCAATTTGCTGGTGACATCCATTGG
TATGACGTTCGCAATGATTGCTTTCTCATTCTTATTCACAATGATGGAAC
CTGTTCCATGGAAATTGAAAAttggttttcatttttttggtttcttttca
CTCATCGTTGGAATGATTCAATTTGGAATAACAGTTGATTCAACAGATTG
TGATTACACGACACCAAATTTATACATGCTGTCATTGTCCTTTGGTATTT
TTGCTTTTGTCACtggtttgtttatttgtttatgcATTCCATTCTGGTTT
GTGAATTATTTTTGGCCAGATTCTGTATTGAATCGTAAGGAGAGAAGAGG
TATCTGTTATGAACCTGTGAAATGCTGCTCCTGCATCTGGCATGTGTAAA
AGTAGACGTAGTAGATGCAACAAATAGACATCATTGTTTGGTATTTCAAA
CAATAGACCTCTTTGATAAAGATGTTTATTATTAAAGATGACGTATAAGT
AAAGTGAAAATAAACgctgatttattttttgtttgggAAGACacaatttt
ttattgcattttacTGATGATGAAGAGTGAAAAGAAACATATTGTTAAAA
ATGCTTCAAGGTTGAACATGTATATacattgaaattaaaaaataagtcGT
GTGGATTGACAGAATCATATAACGACATAACattaaaaactaaaaagggA
ACTGTGACGATCAGATGATTATACTTTTTATAGATAAAGTAACttatttt
gtaaatgttttatttatacaaaaccAATAATTTATCctgattttatatta
tttttaaactactttaaaaataatcaaaagaatTAAATCTGTTATTTAAG
TTTTTAGGAGAGCTCGACTTTAAAAATTTGCAGATGAC Run BLAST on NCBI protein sequence of TCONS_00009431-protein >TCONS_00009431-protein ID=TCONS_00009431-protein|Name=TCONS_00009431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MWYYFVAHVAYHFTRWFPKSNRRGVRMFIIFISLLFIIPQFIVLIDKASG
RYCDQPLLNLLVTSIGMTFAMIAFSFLFTMMEPVPWKLKIGFHFFGFFSL
IVGMIQFGITVDSTDCDYTTPNLYMLSLSFGIFAFVTGLFICLCIPFWFV
NYFWPDSVLNRKERRGICYEPVKCCSCIWHV Run BLAST on NCBI transcript from alignment at sc0000093:538430..539767 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009431 ID=TCONS_00009431|Name=TCONS_00009431|organism=Clytia hemisphaerica|type=transcript|length=1338bp|location=Sequence derived from alignment at sc0000093:538430..539767 (Clytia hemisphaerica)
GTCATCTGCAAATTTTTAAAGTCGAGCTCTCCTAAAAACTTAAATAACAG
ATTTAattcttttgattatttttaaagtagtttaaaaataatataaaatc
agGATAAATTATTggttttgtataaataaaacatttacaaaataaGTTAC
TTTATCTATAAAAAGTATAATCATCTGATCGTCACAGTTccctttttagt
ttttaatGTTATGTCGTTATATGATTCTGTCAATCCACACgacttatttt
ttaatttcaatgtATATACATGTTCAACCTTGAAGCATTTTTAACAATAT
GTTTCTTTTCACTCTTCATCATCAgtaaaatgcaataaaaaattgtGTCT
TcccaaacaaaaaataaatcagcGTTTATTTTCACTTTACTTATACGTCA
TCTTTAATAATAAACATCTTTATCAAAGAGGTCTATTGTTTGAAATACCA
AACAATGATGTCTATTTGTTGCATCTACTACGTCTACTTTTACACATGCC
AGATGCAGGAGCAGCATTTCACAGGTTCATAACAGATACCTCTTCTCTCC
TTACGATTCAATACAGAATCTGGCCAAAAATAATTCACAAACCAGAATGG
AATgcataaacaaataaacaaaccaGTGACAAAAGCAAAAATACCAAAGG
ACAATGACAGCATGTATAAATTTGGTGTCGTGTAATCACAATCTGTTGAA
TCAACTGTTATTCCAAATTGAATCATTCCAACGATGAGtgaaaagaaacc
aaaaaaatgaaaaccaaTTTTCAATTTCCATGGAACAGGTTCCATCATTG
TGAATAAGAATGAGAAAGCAATCATTGCGAACGTCATACCAATGGATGTC
ACCAGCAAATTGAGTAAAGGTTGATCACAATATCTCCCGCTGGCTTTATC
AATCAATACAATGAATTGCGGAATGATGAAGAGTAATGATATGAATATGA
TAAACATACGCACACCACGTCGGTTTGATTTTGGAAACCATCGAGTGAAA
TGATAGGCCACATGAGCAACAAAATAATACCACATTGTTATTTATATTAT
CTCACtattattttttactaaaaactAACGTATACCTATAATGtcatact
ttctctttaaaagGATATTGAATGATCTGATGAGCTCTCTTTAAAAAACA
AGGATATTAACAAGAATAGGAAATGATCTTTATTTTTAAGAGTACGAGAG
TCTAATCAAAATCCAGCATTCCTTATGGGAATAATTTCTGAGTTCTACCA
CCAAAATGCAGCctacttttttacaaaaaaatatcagtAAAGAGGGCAAA
aagacatgaaaacaaaagtttttttttcacttttactT Coding sequence (CDS) from alignment at sc0000093:538430..539767 >TCONS_00009431 ID=TCONS_00009431|Name=TCONS_00009431|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0000093:538430..539767 (Clytia hemisphaerica)
TTACACATGCCAGATGCAGGAGCAGCATTTCACAGGTTCATAACAGATAC
CTCTTCTCTCCTTACGATTCAATACAGAATCTGGCCAAAAATAATTCACA
AACCAGAATGGAATgcataaacaaataaacaaaccaGTGACAAAAGCAAA
AATACCAAAGGACAATGACAGCATGTATAAATTTGGTGTCGTGTAATCAC
AATCTGTTGAATCAACTGTTATTCCAAATTGAATCATTCCAACGATGAGt
gaaaagaaaccaaaaaaatgaaaaccaaTTTTCAATTTCCATGGAACAGG
TTCCATCATTGTGAATAAGAATGAGAAAGCAATCATTGCGAACGTCATAC
CAATGGATGTCACCAGCAAATTGAGTAAAGGTTGATCACAATATCTCCCG
CTGGCTTTATCAATCAATACAATGAATTGCGGAATGATGAAGAGTAATGA
TATGAATATGATAAACATACGCACACCACGTCGGTTTGATTTTGGAAACC
ATCGAGTGAAATGATAGGCCACATGAGCAACAAAATAATACCACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009431-exon-sc0000093-1491911889:538430..539767 | TCONS_00009431-exon-sc0000093-1491911889:538430..539767 | Clytia hemisphaerica | exon |
| TCONS_00009431-exon-sc0000093-1510915933:538430..539767 | TCONS_00009431-exon-sc0000093-1510915933:538430..539767 | Clytia hemisphaerica | exon |
| TCONS_00009431-exon-sc0000093-1575043694:538430..539767 | TCONS_00009431-exon-sc0000093-1575043694:538430..539767 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000093 | supercontig | sc0000093:538430..539767 . |
Blast
The following BLAST results are available for this feature:
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