TCONS_00009428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009428
Unique NameTCONS_00009428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009428 ID=TCONS_00009428|Name=TCONS_00009428|organism=Clytia hemisphaerica|type=transcript|length=624bp
GAAACATGGCCTTCCGAACGTCTTTTCCGTTCATCTCTCATAATTTCTTC
GGTCCAATGTATTTTATCGTTCAAATCTAACGAATCATTTAATTTTGAGC
GTCGACTTAATAACGTTGATAAAACTATTAGAAGAAGTCCAAGGACTAAT
GCAACCGGTCCGATTATCTTAGCATATCGTATAGCATTCTTATTAACACC
AGCGTTTTCAGCAGAACCAATCAAATGTCTGCTATCTTTCACGTGACCTT
GATGGTCTAAATCAGCTTTATCTTGAAAAGGAAAATGATCAACGTCCCCG
TCTTTAGGTCCTTTAGGAGGTTGCCAATCTGCTACATTTGGAATGTCTTC
GTCTCTAGGACCTTTACGGGGCCGCCAAGGTAATGGGTTCTGTATCGATT
TATTCGGTTCTGACTCACGATCTGGTTCATGATCACATTCTACACAATGT
CTGCCAGCTAAATGACCATATACGGTAAGCACAAGACCGATAACTAACAC
AATGAAACCGAATGTTCTTAATATTGAAGTCCGTAGTCTTATATTCGGCG
TGGTTGTTGTCATCATAATAAATATAGATTGGTTTTAGGTATGATATCTC
TGAAAAGTAAATATGGTAAAAAGG
Run BLAST on NCBI

protein sequence of TCONS_00009428-protein

>TCONS_00009428-protein ID=TCONS_00009428-protein|Name=TCONS_00009428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MMTTTTPNIRLRTSILRTFGFIVLVIGLVLTVYGHLAGRHCVECDHEPDR
ESEPNKSIQNPLPWRPRKGPRDEDIPNVADWQPPKGPKDGDVDHFPFQDK
ADLDHQGHVKDSRHLIGSAENAGVNKNAIRYAKIIGPVALVLGLLLIVLS
TLLSRRSKLNDSLDLNDKIHWTEEIMRDERKRRSEGHV
Run BLAST on NCBI

transcript from alignment at sc0000093:323059..323682

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009428 ID=TCONS_00009428|Name=TCONS_00009428|organism=Clytia hemisphaerica|type=transcript|length=624bp|location=Sequence derived from alignment at sc0000093:323059..323682 (Clytia hemisphaerica)
CCTTTTTACCATATTTACTTTTCAGAGATATCATACCTAAAACCAATCTA
TATTTATTATGATGACAACAACCACGCCGAATATAAGACTACGGACTTCA
ATATTAAGAACATTCGGTTTCATTGTGTTAGTTATCGGTCTTGTGCTTAC
CGTATATGGTCATTTAGCTGGCAGACATTGTGTAGAATGTGATCATGAAC
CAGATCGTGAGTCAGAACCGAATAAATCGATACAGAACCCATTACCTTGG
CGGCCCCGTAAAGGTCCTAGAGACGAAGACATTCCAAATGTAGCAGATTG
GCAACCTCCTAAAGGACCTAAAGACGGGGACGTTGATCATTTTCCTTTTC
AAGATAAAGCTGATTTAGACCATCAAGGTCACGTGAAAGATAGCAGACAT
TTGATTGGTTCTGCTGAAAACGCTGGTGTTAATAAGAATGCTATACGATA
TGCTAAGATAATCGGACCGGTTGCATTAGTCCTTGGACTTCTTCTAATAG
TTTTATCAACGTTATTAAGTCGACGCTCAAAATTAAATGATTCGTTAGAT
TTGAACGATAAAATACATTGGACCGAAGAAATTATGAGAGATGAACGGAA
AAGACGTTCGGAAGGCCATGTTTC

Coding sequence (CDS) from alignment at sc0000093:323059..323682

>TCONS_00009428 ID=TCONS_00009428|Name=TCONS_00009428|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0000093:323059..323682 (Clytia hemisphaerica)
ATGATGACAACAACCACGCCGAATATAAGACTACGGACTTCAATATTAAG
AACATTCGGTTTCATTGTGTTAGTTATCGGTCTTGTGCTTACCGTATATG
GTCATTTAGCTGGCAGACATTGTGTAGAATGTGATCATGAACCAGATCGT
GAGTCAGAACCGAATAAATCGATACAGAACCCATTACCTTGGCGGCCCCG
TAAAGGTCCTAGAGACGAAGACATTCCAAATGTAGCAGATTGGCAACCTC
CTAAAGGACCTAAAGACGGGGACGTTGATCATTTTCCTTTTCAAGATAAA
GCTGATTTAGACCATCAAGGTCACGTGAAAGATAGCAGACATTTGATTGG
TTCTGCTGAAAACGCTGGTGTTAATAAGAATGCTATACGATATGCTAAGA
TAATCGGACCGGTTGCATTAGTCCTTGGACTTCTTCTAATAGTTTTATCA
ACGTTATTAAGTCGACGCTCAAAATTAAATGATTCGTTAGATTTGAACGA
TAAAATACATTGGACCGAAGAAATTATGAGAGATGAACGGAAAAGACGTT
CGGAAGGCCATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005284XLOC_005284Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009428-proteinTCONS_00009428-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009428-exon-sc0000093-1491911889:323059..323682TCONS_00009428-exon-sc0000093-1491911889:323059..323682Clytia hemisphaericaexon
TCONS_00009428-exon-sc0000093-1510915933:323059..323682TCONS_00009428-exon-sc0000093-1510915933:323059..323682Clytia hemisphaericaexon
TCONS_00009428-exon-sc0000093-1575043694:323059..323682TCONS_00009428-exon-sc0000093-1575043694:323059..323682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:323059..323682 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.940374	0.250094	0.677562	0.284095	0.230572	0.0911006	0	0.926059	0	0.446163	0	0	0.227423	0.236181	14.3688	5.15734	0.449231	0.263113	0	0	0	0.120949	0	0	0	0.0819161	0.117222	0	0	0.0966734
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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