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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009422 ID=TCONS_00009422|Name=TCONS_00009422|organism=Clytia hemisphaerica|type=transcript|length=1399bp
GCCATACTTTGTACTGATGTATACTGTAGAAAAAGGGAGAAAAGTAAAAT
GCGTGTCTAGGAAAATAAACAATGTTATTTAAACTACAATCatttaatat
tgaaattatgGTTCACAAAACATATTTTAAGTGTACTCGCTTCAAATATT
CCAAAGGTGTGTCATGTTTGTTTCGATGTCATCAAATTCCGAAAAGAATT
CAGTAATTTGATTCTTCTTGAAATCTTCAACAAGGTTCGAAATGAAAgtc
tcatttttgaaattcaaatcatCAAACAGTTTTCCAATGTGATCGAGGAA
TGTTTGACCAAATCCAAACAAAAGATTCATTTCTGGTACGAAAAAGTTCT
GTAAATAGCCTATTTTTAAGGCTGTTGTTAATTTCTCAAATATCATGTAA
GCAAGCTGCAAATAGTCCATGATTTCTTCAAGTTTCTGAATTTCCTCTGG
CGGTGTATTCTCTAACGTGAAAAGATAGACCGTCTTAAGAAGATAGGAAG
ATAATTTCCGTCCAGTTTCGCTATCAACGAGACCATGGGTGTTCAATGTG
AAAATCAGCTTCGCCAATAAGtaacttttcttttgaaaaggaCTTTGTTT
ACTTGCTAAGATGACTTCTGCTTCAGACAAAGATACTCTCCATGTCTTGC
CTTGGTCCCCGACAGACTTCCGGACCAATAAGCATCTAGCCTCGCGGATA
TCGCACATCGTCTCTAGATCTGGCCAATATCGTTGCCTTTCAAACCAATC
AGTTGTAATATCGGGCCAGAAATTTAACCGAAAACAGAAAACAAAGTCAA
GCATTGTTTCGTTGGTGACCATCTCTATTAAAGAGCTGTCATTTATATTA
TATTCCATGTCCGAAAATTCATGTGCGGATACAGTCAATGCAGGACATCC
TTTTTTAGTAAACTCCATAAGGTCAAACTCACTATTAAAGATCTTGACGT
CTTTCACTGTATCCTTAGCCTTCGAAAAAGTTTGAATTATCTGCTCTTTA
TTTACGATATCAATTGGTAATGGTGTATGGATAAGATAGTAGCCAGGATA
TTCTGTTTCCATTAAAATCTTATTCGCTTGTTCCTTTGAAAACTCGCCAA
GTATGAACATTGCATCGATATCAAAGTTTTTCCCTTCCACGGGGATCATC
AAAGGAACCAAGAATGCGCCTTCAATGAGACTTCCAGTTGGTATCATGTG
TTTATAAAAAGAATCATCATTGACGATCTCTTTTCTTACCCCTTCatcga
ttttgaaaaattgttccACGAAGAAATTCAACTCTGAGACAGACATTTTA
gttctttttttcacgaaatctCTTGTTTCTCACTTAACAGTGCAAAATGC
AGTGATGTTTGATTTGTCAAATATGAACCATTAAAATAACATCTCTTGC Run BLAST on NCBI protein sequence of TCONS_00009422-protein >TCONS_00009422-protein ID=TCONS_00009422-protein|Name=TCONS_00009422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MSVSELNFFVEQFFKIDEGVRKEIVNDDSFYKHMIPTGSLIEGAFLVPLM
IPVEGKNFDIDAMFILGEFSKEQANKILMETEYPGYYLIHTPLPIDIVNK
EQIIQTFSKAKDTVKDVKIFNSEFDLMEFTKKGCPALTVSAHEFSDMEYN
INDSSLIEMVTNETMLDFVFCFRLNFWPDITTDWFERQRYWPDLETMCDI
REARCLLVRKSVGDQGKTWRVSLSEAEVILASKQSPFQKKSYLLAKLIFT
LNTHGLVDSETGRKLSSYLLKTVYLFTLENTPPEEIQKLEEIMDYLQLAY
MIFEKLTTALKIGYLQNFFVPEMNLLFGFGQTFLDHIGKLFDDLNFKNET
FISNLVEDFKKNQITEFFSEFDDIETNMTHLWNI Run BLAST on NCBI transcript from alignment at sc0000093:150680..152078 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009422 ID=TCONS_00009422|Name=TCONS_00009422|organism=Clytia hemisphaerica|type=transcript|length=1399bp|location=Sequence derived from alignment at sc0000093:150680..152078 (Clytia hemisphaerica)
GCAAGAGATGTTATTTTAATGGTTCATATTTGACAAATCAAACATCACTG
CATTTTGCACTGTTAAGTGAGAAACAAGagatttcgtgaaaaaaagaacT
AAAATGTCTGTCTCAGAGTTGAATTTCTTCGTggaacaatttttcaaaat
cgatGAAGGGGTAAGAAAAGAGATCGTCAATGATGATTCTTTTTATAAAC
ACATGATACCAACTGGAAGTCTCATTGAAGGCGCATTCTTGGTTCCTTTG
ATGATCCCCGTGGAAGGGAAAAACTTTGATATCGATGCAATGTTCATACT
TGGCGAGTTTTCAAAGGAACAAGCGAATAAGATTTTAATGGAAACAGAAT
ATCCTGGCTACTATCTTATCCATACACCATTACCAATTGATATCGTAAAT
AAAGAGCAGATAATTCAAACTTTTTCGAAGGCTAAGGATACAGTGAAAGA
CGTCAAGATCTTTAATAGTGAGTTTGACCTTATGGAGTTTACTAAAAAAG
GATGTCCTGCATTGACTGTATCCGCACATGAATTTTCGGACATGGAATAT
AATATAAATGACAGCTCTTTAATAGAGATGGTCACCAACGAAACAATGCT
TGACTTTGTTTTCTGTTTTCGGTTAAATTTCTGGCCCGATATTACAACTG
ATTGGTTTGAAAGGCAACGATATTGGCCAGATCTAGAGACGATGTGCGAT
ATCCGCGAGGCTAGATGCTTATTGGTCCGGAAGTCTGTCGGGGACCAAGG
CAAGACATGGAGAGTATCTTTGTCTGAAGCAGAAGTCATCTTAGCAAGTA
AACAAAGtccttttcaaaagaaaagttaCTTATTGGCGAAGCTGATTTTC
ACATTGAACACCCATGGTCTCGTTGATAGCGAAACTGGACGGAAATTATC
TTCCTATCTTCTTAAGACGGTCTATCTTTTCACGTTAGAGAATACACCGC
CAGAGGAAATTCAGAAACTTGAAGAAATCATGGACTATTTGCAGCTTGCT
TACATGATATTTGAGAAATTAACAACAGCCTTAAAAATAGGCTATTTACA
GAACTTTTTCGTACCAGAAATGAATCTTTTGTTTGGATTTGGTCAAACAT
TCCTCGATCACATTGGAAAACTGTTTGatgatttgaatttcaaaaatgag
acTTTCATTTCGAACCTTGTTGAAGATTTCAAGAAGAATCAAATTACTGA
ATTCTTTTCGGAATTTGATGACATCGAAACAAACATGACACACCTTTGGA
ATATTTGAAGCGAGTACACTTAAAATATGTTTTGTGAACcataatttcaa
tattaaatGATTGTAGTTTAAATAACATTGTTTATTTTCCTAGACACGCA
TTTTACTTTTCTCCCTTTTTCTACAGTATACATCAGTACAAAGTATGGC Coding sequence (CDS) from alignment at sc0000093:150680..152078 >TCONS_00009422 ID=TCONS_00009422|Name=TCONS_00009422|organism=Clytia hemisphaerica|type=CDS|length=1155bp|location=Sequence derived from alignment at sc0000093:150680..152078 (Clytia hemisphaerica)
ATGTCTGTCTCAGAGTTGAATTTCTTCGTggaacaatttttcaaaatcga
tGAAGGGGTAAGAAAAGAGATCGTCAATGATGATTCTTTTTATAAACACA
TGATACCAACTGGAAGTCTCATTGAAGGCGCATTCTTGGTTCCTTTGATG
ATCCCCGTGGAAGGGAAAAACTTTGATATCGATGCAATGTTCATACTTGG
CGAGTTTTCAAAGGAACAAGCGAATAAGATTTTAATGGAAACAGAATATC
CTGGCTACTATCTTATCCATACACCATTACCAATTGATATCGTAAATAAA
GAGCAGATAATTCAAACTTTTTCGAAGGCTAAGGATACAGTGAAAGACGT
CAAGATCTTTAATAGTGAGTTTGACCTTATGGAGTTTACTAAAAAAGGAT
GTCCTGCATTGACTGTATCCGCACATGAATTTTCGGACATGGAATATAAT
ATAAATGACAGCTCTTTAATAGAGATGGTCACCAACGAAACAATGCTTGA
CTTTGTTTTCTGTTTTCGGTTAAATTTCTGGCCCGATATTACAACTGATT
GGTTTGAAAGGCAACGATATTGGCCAGATCTAGAGACGATGTGCGATATC
CGCGAGGCTAGATGCTTATTGGTCCGGAAGTCTGTCGGGGACCAAGGCAA
GACATGGAGAGTATCTTTGTCTGAAGCAGAAGTCATCTTAGCAAGTAAAC
AAAGtccttttcaaaagaaaagttaCTTATTGGCGAAGCTGATTTTCACA
TTGAACACCCATGGTCTCGTTGATAGCGAAACTGGACGGAAATTATCTTC
CTATCTTCTTAAGACGGTCTATCTTTTCACGTTAGAGAATACACCGCCAG
AGGAAATTCAGAAACTTGAAGAAATCATGGACTATTTGCAGCTTGCTTAC
ATGATATTTGAGAAATTAACAACAGCCTTAAAAATAGGCTATTTACAGAA
CTTTTTCGTACCAGAAATGAATCTTTTGTTTGGATTTGGTCAAACATTCC
TCGATCACATTGGAAAACTGTTTGatgatttgaatttcaaaaatgagacT
TTCATTTCGAACCTTGTTGAAGATTTCAAGAAGAATCAAATTACTGAATT
CTTTTCGGAATTTGATGACATCGAAACAAACATGACACACCTTTGGAATA
TTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009422-exon-sc0000093-1491911889:150680..152078 | TCONS_00009422-exon-sc0000093-1491911889:150680..152078 | Clytia hemisphaerica | exon |
| TCONS_00009422-exon-sc0000093-1510915933:150680..152078 | TCONS_00009422-exon-sc0000093-1510915933:150680..152078 | Clytia hemisphaerica | exon |
| TCONS_00009422-exon-sc0000093-1575043694:150680..152078 | TCONS_00009422-exon-sc0000093-1575043694:150680..152078 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000093 | supercontig | sc0000093:150680..152078 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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