TCONS_00009418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009418
Unique NameTCONS_00009418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009418 ID=TCONS_00009418|Name=TCONS_00009418|organism=Clytia hemisphaerica|type=transcript|length=543bp
cgcgactatataaattgtaactagaaaagagattgttttttaatcgaaca
aaggcagacaaagtcactcaaaagctttcaaaaaacttcaaagaagGTAC
TTTTAGGAGGTTATAGAGTTTATAATTGAATGAAGAGGTGAACTTGTAAT
ATGTTTTGAGTGTAACATGTTATCTAGATTTCTCTAACTTTTATTTTCGC
GAttgtaaaattccaaataattttgcttggactaattttcgcgaatcaaa
gGCCTTCAAAATGTTCGCGTTGACtaaatttcgtgaaaatggccaaaatt
tgcgaaaactgtgaaaattaatccacgcgaaaatttatccacttaaggta
catCCCCTCTATTTCAAGGAAGAAGTAATATCTATGCATTGGAATAACCT
AAAGCCATCTACTTATATGGTccttcttatttttctaaaagattttACAG
AAAAACTTTCATTTCTGCACAATCAGGTTTATTCATACATAAGATCGGCA
CtaatttttcaatagaaaaagtTTCATAACTTTACTTATCCTT
Run BLAST on NCBI

transcript from alignment at sc0000093:82052..82594

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009418 ID=TCONS_00009418|Name=TCONS_00009418|organism=Clytia hemisphaerica|type=transcript|length=543bp|location=Sequence derived from alignment at sc0000093:82052..82594 (Clytia hemisphaerica)
AAGGATAAGTAAAGTTATGAAactttttctattgaaaaattaGTGCCGAT
CTTATGTATGAATAAACCTGATTGTGCAGAAATGAAAGTTTTTCTGTaaa
atcttttagaaaaataagaaggACCATATAAGTAGATGGCTTTAGGTTAT
TCCAATGCATAGATATTACTTCTTCCTTGAAATAGAGGGGatgtacctta
agtggataaattttcgcgtggattaattttcacagttttcgcaaattttg
gccattttcacgaaatttaGTCAACGCGAACATTTTGAAGGCctttgatt
cgcgaaaattagtccaagcaaaattatttggaattttacaaTCGCGAAAA
TAAAAGTTAGAGAAATCTAGATAACATGTTACACTCAAAACATATTACAA
GTTCACCTCTTCATTCAATTATAAACTCTATAACCTCCTAAAAGTACctt
ctttgaagttttttgaaagcttttgagtgactttgtctgcctttgttcga
ttaaaaaacaatctcttttctagttacaatttatatagtcgcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005275XLOC_005275Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009418-exon-sc0000093-1491911889:82052..82594TCONS_00009418-exon-sc0000093-1491911889:82052..82594Clytia hemisphaericaexon
TCONS_00009418-exon-sc0000093-1510915933:82052..82594TCONS_00009418-exon-sc0000093-1510915933:82052..82594Clytia hemisphaericaexon
TCONS_00009418-exon-sc0000093-1575043694:82052..82594TCONS_00009418-exon-sc0000093-1575043694:82052..82594Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:82052..82594 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.380344	0.244998	0.41028	0.516924	0.578438	0.342797	0.136564	0.256574	0.360519	0.224249	0.431725	0.495197	0.35376	0.371674	0.665472	0.388368	0.558177	0.164946	0.22583	0.130851	2.63274	0.964718	0.487163	0.221451	0.456178	0.101782	0.924829	0.932648	1.00019	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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