|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009412 ID=TCONS_00009412|Name=TCONS_00009412|organism=Clytia hemisphaerica|type=transcript|length=2739bpRun BLAST on NCBI transcript from alignment at sc0000093:521646..538105- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009412 ID=TCONS_00009412|Name=TCONS_00009412|organism=Clytia hemisphaerica|type=transcript|length=16460bp|location=Sequence derived from alignment at sc0000093:521646..538105- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009412 vs. Swiss-Prot (Human)
Match: TXIP1 (Translin-associated factor X-interacting protein 1 OS=Homo sapiens GN=TSNAXIP1 PE=1 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 1.438e-70 Identity = 160/511 (31.31%), Postives = 276/511 (54.01%), Query Frame = 2
Query: 683 CVMRI-QXKNNEKQELVDMRNENTRLEKTITSLKEEIESLQIQVKKCQKEIGIEYKKYRDELDARKLLIQDINDMRYQQEELKKALSGNAGKEGEHKEDAVILKIALTKAREELSSKTQRLTEVLSDYGDVVPRREFEALERQFKALGEEHAEMKKNNNQLLKEHSALIDVHKKVIEQRDGFAMDCERMRQSATPRPDWNKCGLYVEGGFERWSNLADNTSTNEKLDLLLSEMTGQDVSVIKAGGGIV---DYFEPKGVDESIPKYLHSNERVRNRRLNKRDLLIMIKDVWMEKTKEEGHEPFTKDRANMADYLFTYLRQRFGV-DAMVTEWGYNLHDAMVRYSFDSNVAQFSSILNNELDEDVHFMQLKRLENMFKALVQKDASETGSLSKENFQTILKAHFHFVSDDVITKMVDAAVEELGGEKEDGQILYKDLFTEDDEGRMGAFVKLILQTYEDDKAEMIRHI--ETTFEKKSEINSNELKTAFLDFYPKLGKSKKAAETMITMAFK 2194
C RI + EK E+ ++ E L K I EE SLQ +V K +K + EY Y E DA K+LI D+N++RYQ+E++ +L+ + G GE D V L +AL R++L+ L + +++GDVVPRR+FE E+ K L E+ ++ + ++ KEH L+ +H +++RD F + + +++++TPRPDW KC V GG ERW LA+ ++++ +D+LL E+ G G++ D+F G E+IP +L + V N++ +K+D++ ++KD W E+ EE E F D+ F +L RFG DAM W Y + + + + + ++QF ++L + E+V+ Q + + + K + D+ G L+ E F T+LK+ F +++ I ++++A D + Y+ LF ED+EG+ FV+ + + Y D+K E ++ + E E E+ +L+ + P L K+ T ++ AF+
Sbjct: 130 CNERILAMRAEEKYEISLLKKEKMNLLKLIDKKNEEKISLQSEVTKLRKNLAEEYLHYLSERDACKILIADLNELRYQREDM--SLAQSPGIWGE---DPVKLTLALKMTRQDLTRTQMELNNMKANFGDVVPRRDFEMQEKTNKDLQEQLDTLRASYEEVRKEHEILMQLHMSTLKERDQFFSELQEIQRTSTPRPDWTKCKDVVAGGPERWQMLAEGKNSDQLVDVLLEEI----------GSGLLREKDFFPGLGYGEAIPAFLRFDGLVENKKPSKKDVVNLLKDAWKERLAEEQKETF-------PDFFFNFLEHRFGPSDAMA--WAYTIFENIKIFHSNEVMSQFYAVLMGKRSENVYVTQKETVAQLLKEMTNADSQNEGLLTMEQFNTVLKSTFPLKTEEQIQELMEAGGWHPSSSNAD-LLNYRSLFMEDEEGQSEPFVQKLWEQYMDEKDEYLQQLKQELGIELHEEVTLPKLRGGLMTIDPSL--DKQTVNTYMSQAFQ 613 HSP 2 Score: 107.842 bits (268), Expect = 5.226e-24 Identity = 56/110 (50.91%), Postives = 80/110 (72.73%), Query Frame = 1
Query: 364 AKPKLLQKLESYLQKELKALGCQNDAKPSEKRMQPYREVFDYVIENFRTYKPLLSAIKLEYETMMGDQKETIKKLEPLKAMLVNMNEQCEQKILGIKNNEKQELVDMRNE 693
AKP+ L++LE+YL+KEL L D+ E R+QPYRE+F++ IE+F+TYKPLLS+IK YE M+ Q+E I+ LEPLKA LV +NE C ++IL ++ EK E+ ++ E
Sbjct: 43 AKPQYLEELENYLRKELLLLDLGTDST-QELRLQPYREIFEFFIEDFKTYKPLLSSIKNAYEGMLAHQREKIRALEPLKAKLVTVNEDCNERILAMRAEEKYEISLLKKE 151 The following BLAST results are available for this feature:
BLAST of TCONS_00009412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.