TCONS_00009398 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009398
Unique Name	TCONS_00009398
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2972

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000093:234641..237612-

transcript sequence

>TCONS_00009398 ID=TCONS_00009398|Name=TCONS_00009398|organism=Clytia hemisphaerica|type=transcript|length=2972bp
CACACATCAAACATAGAACACAAAATTTATGTGAGTGATAGTTGCTTTAT
AAAACTTATAGTAAAATGCTTGGTATTGTCAGTAAAATCAAATCGTTGAA
ACCAACTAAGATCGATCCAACAAAATGCGATCCAAGGAGATCTTTATATC
AACAGATTCTGAGAAACAGTGAAGCAACATCAGAAAGACAAGAGAGGCAG
TTCAATTTAGGGAGCACGTGTTTCACAAGTGATCCAGTATACGCGGCTAA
ATTCGTTCTTTGGAGAGAATACTGTGACAGCTCACTTTTCGTTGAAGGTG
AACACACTAGTGTCTTCATACCTCCGACGTTTGCATCATGTCAGTACACG
AACAATTCTCCAGTAGCTATCCTCGATTTTGAAGTCAAGGCAGATATTGA
GAGACTTGTAAACAATTTGCTTTATCATTCACCAGACTATTGGCTGACGA
TAGAATTACACAATTTTATGCAAACACAATCCGGAGAACATCGCACTATC
GACAAGAAGGAATTCGACCAGTGGGTTTTCAACCTTAAAATTATGTATCT
GGTCATTGAAGAGTTGAACAATGAACAGTTGAATTTACCATCAACAACTT
CCAGTATTGAAGTTTTCGTCCAAGCTTGCATTAATAAATTTCCTTCGAAT
TCACCAGAGTCGGCACTGAAAACTCTTCTCAGACAGGATCTTTCCAGAAG
AATCTCCAAAGACaaaaagaatctaaaaaaactGGTTGAGGATAACCCAC
CACAAGACTCGAACCTTAAATGGCTTTTTGATTTGGAGTTGTCGCNTAAA
TTTCCTTCGAATTTACCAGGGTCGGCACTGAAAACTCTTCTCAGACAGTA
TCCTTCCAAAAGAATCTCATTCAAAAAGAATCTCAAAAAATTGGTTGAGG
ATAACCCACCACAAGACTCGAACCTTTTATGGCTTTTTGATTTGGAGTTG
TCGGAGTTGGGAGAAAAGCACGAGCAGTGGATTTACAATCAGTTGTTATC
ATTAAAAGATGACGTTCTCCAGGACACAGTTGTTCTTTCATCGCCCTGTT
TTTTgacaaatgtgaaaaataaaatgcACAAAGAGATGGACTTTTTGATA
ATCTCATGGAAGAGAAAACTCATAATATCTATTGAAGCAAAACGTTCGCT
CTTCAGCGATAAAGCTTTTGATCAATTGgaatcgaactttcgaatctttg
aGGAACGGCTAGGAGATCAACTAGGATCCGAGTGGATCTTTTTCCCCGTT
GTCTGTGTAGAGAACGACTCCTATTTAATAAACAGTAAACATTACATCAC
CACTGAAACTGAAATTCAACCGTGGCTAACCAGTATTTTCAGAGGATTCC
CAACCGCACCAGTCATCATAAAACCGACTCTTCTTGATGAGACTAAAAAC
CTCCTTCAGATTTTAATCTTCGCATTACATATCATGAAAAATGACATAGT
CGCACCTATTACCACCACAAACTGGGTCGAATACACAAGTAATGCGATTG
ACAATATCTCAACATGTCAGAACAtccttttctactccaaccAACAAATG
GCAATCATGAATCTTAGCGATACACGATATGGCAGGCTGATCATTTGTGG
AAATTTTGGTGTTGGCAAAAGTTTATTGCTCCAGCAAAAAGCAATACAAA
TAAACCAACAACCTCGATATCAAGGGAAAGTTATGTTTGTATCGGATCGC
GTCGGCCAGAGATTAAATTCGATACTGAGTTATCGTCTGATGGTAGATTT
AAAAGAAGATCACGGAATATTTGTCGAGGGAATGGTGAGTAAAAGTAAAC
TTAATTACTGCACGATTTAACGTCCATGGTTCCCAGAAATTGGGGTTGGG
CGCCTTCCTCTGATGATCGTACGCCAGGCTGCCCGGTCGTTAGTCAAGTC
GACAGTCGCATTAACAATTTTGAGGTCATCTTTAATATTGTCGATCTTTT
TTCTTGTACGACATGACATTCAATGTTTCGATTCATTGTATTTCAGAATA
TTTTGAACTACATCTTAGTTCAGCTTAGTTGGTTGATGGGAAAAagcagt
ttttaaaattttacacttCTAGTCTCATTTTAACAGTTACTGGTTTCTTT
TATTTGTATattgtcaatattttcattttgtttactCTTTCATCTTTTTA
CCTTAGGACATCAATTATCAACATTCAGATCTAATACAAAAGGTCGAAAA
GTATGGTATCAAAGCAGTGTTTATCGACGAATGTGAGATGGGATATACCA
GCGATGGTCAGTGGATGAAAAAATTGATATCACTTGTCGACTTTTTGTGG
ATAGTCCCATCAACATCGATGTTATCTATGAGATCTCTTCTAAGTAAATA
TGAGCGAGATTTTACTTTTCTGGATCTATCAAAAAACCTTAGGAACACTC
CACAGATCGTGCAAGCAGCTAAAGCAGAAGCTGAAAGAAGTGAGTACCTA
TATGGTGAAGGGATTGCAATGCCTCCTCCAAATTTCCCTAAAGGGAGAGA
TGCGATATTATCCAACTCATTCGAAGATGGGTTGAAAAAGGCACGAATAA
TGACCAAGAGCGGTATCCTTGTTATCACTGACAACATCAATCACATTTCT
AACGGGTCAGCCATGGATCAAATGCGCGAGAACTGGAAATCGTTACATCC
AGAAAGAAATGATTTTACAGATGACGAAAACCCATACAAGTTTCTTACTC
AGggtaatattttggtcatcgcaGGGAATCTATCTTTCGGTTTCGAATGG
CCGACCATTATATTATTTCAAGATGGAAATGATTATCAGTTTGGTGGACC
TTCCTTACATCGGTGTAATTTTATAATGAGATGTACAACCGATCTTATTA
TCGTTCGTACGGAAAATTAAAACTGTTTGaatattaattatttttaatga
aGAATATTCAGTGATGAAATGTACAGATTAACAAATTTGTCAATCAGAAT
GTACAAATTGACACTTGATGCT

Run BLAST on NCBI

transcript from alignment at sc0000093:234641..237612-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009398 ID=TCONS_00009398|Name=TCONS_00009398|organism=Clytia hemisphaerica|type=transcript|length=2972bp|location=Sequence derived from alignment at sc0000093:234641..237612- (Clytia hemisphaerica)
CACACATCAAACATAGAACACAAAATTTATGTGAGTGATAGTTGCTTTAT
AAAACTTATAGTAAAATGCTTGGTATTGTCAGTAAAATCAAATCGTTGAA
ACCAACTAAGATCGATCCAACAAAATGCGATCCAAGGAGATCTTTATATC
AACAGATTCTGAGAAACAGTGAAGCAACATCAGAAAGACAAGAGAGGCAG
TTCAATTTAGGGAGCACGTGTTTCACAAGTGATCCAGTATACGCGGCTAA
ATTCGTTCTTTGGAGAGAATACTGTGACAGCTCACTTTTCGTTGAAGGTG
AACACACTAGTGTCTTCATACCTCCGACGTTTGCATCATGTCAGTACACG
AACAATTCTCCAGTAGCTATCCTCGATTTTGAAGTCAAGGCAGATATTGA
GAGACTTGTAAACAATTTGCTTTATCATTCACCAGACTATTGGCTGACGA
TAGAATTACACAATTTTATGCAAACACAATCCGGAGAACATCGCACTATC
GACAAGAAGGAATTCGACCAGTGGGTTTTCAACCTTAAAATTATGTATCT
GGTCATTGAAGAGTTGAACAATGAACAGTTGAATTTACCATCAACAACTT
CCAGTATTGAAGTTTTCGTCCAAGCTTGCATTAATAAATTTCCTTCGAAT
TCACCAGAGTCGGCACTGAAAACTCTTCTCAGACAGGATCTTTCCAGAAG
AATCTCCAAAGACAAAAAGAATCTAAAAAAACTGGTTGAGGATAACCCAC
CACAAGACTCGAACCTTAAATGGCTTTTTGATTTGGAGTTGTCGCNTAAA
TTTCCTTCGAATTTACCAGGGTCGGCACTGAAAACTCTTCTCAGACAGTA
TCCTTCCAAAAGAATCTCATTCAAAAAGAATCTCAAAAAATTGGTTGAGG
ATAACCCACCACAAGACTCGAACCTTTTATGGCTTTTTGATTTGGAGTTG
TCGGAGTTGGGAGAAAAGCACGAGCAGTGGATTTACAATCAGTTGTTATC
ATTAAAAGATGACGTTCTCCAGGACACAGTTGTTCTTTCATCGCCCTGTT
TTTTGACAAATGTGAAAAATAAAATGCACAAAGAGATGGACTTTTTGATA
ATCTCATGGAAGAGAAAACTCATAATATCTATTGAAGCAAAACGTTCGCT
CTTCAGCGATAAAGCTTTTGATCAATTGGAATCGAACTTTCGAATCTTTG
AGGAACGGCTAGGAGATCAACTAGGATCCGAGTGGATCTTTTTCCCCGTT
GTCTGTGTAGAGAACGACTCCTATTTAATAAACAGTAAACATTACATCAC
CACTGAAACTGAAATTCAACCGTGGCTAACCAGTATTTTCAGAGGATTCC
CAACCGCACCAGTCATCATAAAACCGACTCTTCTTGATGAGACTAAAAAC
CTCCTTCAGATTTTAATCTTCGCATTACATATCATGAAAAATGACATAGT
CGCACCTATTACCACCACAAACTGGGTCGAATACACAAGTAATGCGATTG
ACAATATCTCAACATGTCAGAACATCCTTTTCTACTCCAACCAACAAATG
GCAATCATGAATCTTAGCGATACACGATATGGCAGGCTGATCATTTGTGG
AAATTTTGGTGTTGGCAAAAGTTTATTGCTCCAGCAAAAAGCAATACAAA
TAAACCAACAACCTCGATATCAAGGGAAAGTTATGTTTGTATCGGATCGC
GTCGGCCAGAGATTAAATTCGATACTGAGTTATCGTCTGATGGTAGATTT
AAAAGAAGATCACGGAATATTTGTCGAGGGAATGGTGAGTAAAAGTAAAC
TTAATTACTGCACGATTTAACGTCCATGGTTCCCAGAAATTGGGGTTGGG
CGCCTTCCTCTGATGATCGTACGCCAGGCTGCCCGGTCGTTAGTCAAGTC
GACAGTCGCATTAACAATTTTGAGGTCATCTTTAATATTGTCGATCTTTT
TTCTTGTACGACATGACATTCAATGTTTCGATTCATTGTATTTCAGAATA
TTTTGAACTACATCTTAGTTCAGCTTAGTTGGTTGATGGGAAAAAGCAGT
TTTTAAAATTTTACACTTCTAGTCTCATTTTAACAGTTACTGGTTTCTTT
TATTTGTATATTGTCAATATTTTCATTTTGTTTACTCTTTCATCTTTTTA
CCTTAGGACATCAATTATCAACATTCAGATCTAATACAAAAGGTCGAAAA
GTATGGTATCAAAGCAGTGTTTATCGACGAATGTGAGATGGGATATACCA
GCGATGGTCAGTGGATGAAAAAATTGATATCACTTGTCGACTTTTTGTGG
ATAGTCCCATCAACATCGATGTTATCTATGAGATCTCTTCTAAGTAAATA
TGAGCGAGATTTTACTTTTCTGGATCTATCAAAAAACCTTAGGAACACTC
CACAGATCGTGCAAGCAGCTAAAGCAGAAGCTGAAAGAAGTGAGTACCTA
TATGGTGAAGGGATTGCAATGCCTCCTCCAAATTTCCCTAAAGGGAGAGA
TGCGATATTATCCAACTCATTCGAAGATGGGTTGAAAAAGGCACGAATAA
TGACCAAGAGCGGTATCCTTGTTATCACTGACAACATCAATCACATTTCT
AACGGGTCAGCCATGGATCAAATGCGCGAGAACTGGAAATCGTTACATCC
AGAAAGAAATGATTTTACAGATGACGAAAACCCATACAAGTTTCTTACTC
AGGGTAATATTTTGGTCATCGCAGGGAATCTATCTTTCGGTTTCGAATGG
CCGACCATTATATTATTTCAAGATGGAAATGATTATCAGTTTGGTGGACC
TTCCTTACATCGGTGTAATTTTATAATGAGATGTACAACCGATCTTATTA
TCGTTCGTACGGAAAATTAAAACTGTTTGAATATTAATTATTTTTAATGA
AGAATATTCAGTGATGAAATGTACAGATTAACAAATTTGTCAATCAGAAT
GTACAAATTGACACTTGATGCT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005263	XLOC_005263	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009398-exon-sc0000093-1575043694:234641..237612	TCONS_00009398-exon-sc0000093-1575043694:234641..237612	Clytia hemisphaerica	exon
TCONS_00009398-exon-sc0000093-1510915933:234641..237612	TCONS_00009398-exon-sc0000093-1510915933:234641..237612	Clytia hemisphaerica	exon
TCONS_00009398-exon-sc0000093-1491911889:234641..237612	TCONS_00009398-exon-sc0000093-1491911889:234641..237612	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000093	supercontig	sc0000093:234641..237612 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.286111	0.225384	0.431932	0.568944	0	0.304893	0	0.102096	0.0636802	0.199094	0	0.044114	0.0499027	0	0.0977012	0	0	0.0733817	0	0	0	0	0	0.0774081	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00009398 vs. Swiss-Prot (Human)

BLAST of TCONS_00009398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00009398 (transcript) - C. hemisphaerica