TCONS_00009396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009396
Unique NameTCONS_00009396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009396 ID=TCONS_00009396|Name=TCONS_00009396|organism=Clytia hemisphaerica|type=transcript|length=827bp
AACAACAATGCATGCGTCCTACTGATGTAGGAAAGAAATAATAATAGAAG
ATTTTGATTACttagtttttgaattgtttgttttttttgtttttttttgg
ggtGTAGATGGACCCTTTACTGGACCCTGTGTTTTACGATATAGTGCGGA
GAACGCTGAACGAGTACCACTCCACATTGAGCGACCTTGGtgtcaaaaat
aaaagcaaaatcatGGTCATTGGTAAAAAGAACAGTCCTGAAGAGGATCA
ACTTATGAAAGAAATCgaacaaataaataaacgaaCAAAAGAACTTTTAA
AAAGACTTGAAGACCTTCAAACTGATGTCAAAGATGCTTCGAAGGGATTT
CTGGATTCAGAAAAGATTATCGAAACTTATCAGAAATGCTCGAAGAATTT
AAAAGGTGTCGCAGAGGGCTTCATGAAGAATCTGGAAACATTAGACGCCA
TGACGATCGCTTCACAATATACGGCCATCCGTGAGAAAAGGAAAGACGCC
ATTCGAGATATAAACAATTATCTTGGACGAGCTGATAAGCAGATTGACGA
ATTAGATCATATTCTTGACACGGAATGATGtaacacaaagaaaaaattat
tatggaatggaattttaaatttcaactcTTTAATTTCAACTTACTGGTTT
TCCTGAAATATTACTTGTATATTGTAAAACAATTAAATGTAAAATTTTAG
GTATTTATAtcgagtttttttttgtttgtaaatacttttttattgattGC
ATTCGAATATATAGACGATGGGAACTTCCAGCGGCTCTCAGGCTCAGATT
GTTTGTTAAATTGTTCCTATTTTTGTG
Run BLAST on NCBI

transcript from alignment at sc0000093:193324..196600-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009396 ID=TCONS_00009396|Name=TCONS_00009396|organism=Clytia hemisphaerica|type=transcript|length=3277bp|location=Sequence derived from alignment at sc0000093:193324..196600- (Clytia hemisphaerica)
AACAACAATGCATGCGTCCTACTGATGTAGGAAAGAAATAATAATAGAAG
ATTTTGATTACTTAGTTTTTGAATTGTTTGTTTTTTTTGTTTTTTTTTGG
GGTGTAGATGGACCCTTTACTGGACCCTGTGTTTTACGATATAGTGCGTA
CGTATCTTCTTGTTACAAACAGGGAACCTGTAACAACTTTTTATAATGGA
AGCATATTTGGATCTTCTTTGTTAATCTTCATCGAGATCAAAGCTGAATC
CAAATCAATAAAACATTCTAATTCATGATATGCACCACTGGAGAGGCTTC
CAAGAATTTTCAAAAATTTCAACCCAATACGTCACTTTTTCTATGTTTTA
ATTGACGTGTTTGGGTGGAGAATTTAAAAGTTCTCAGAAGACTCTCCGGT
GGTGCATATCATGACGTATTCATATAATATAATATAATACAAATGAATTA
AATTTGATGTTTGTATATTTTTCAAACTCGGTTACCGGTTATTTTTAAAT
ACCTACCGGGAATAAATTTTTAAATCTTAAAAAAAAGATTAACTTTTGCA
AAATGCAGAAATATTTACTGATTTTTCTCCGTTATACCACGAGGCATTAA
ATAATCATTATCGACGGAACGTGCTGATAAGAGGAATTTACAGTAGCCTA
TTCATAAATTCAAAATATATATTTTTATACTCCAGGGAGAACGCTGAACG
AGTACCACTCCACATTGAGCGACCTTGGTGTCAAAAATAAAAGCAAAATC
ATGGTCATTGGTAAAAAGGTTTGTAGAGATTTCTAACTTTAAAGTGATAA
AGAACATTACAAGGCTTTTATTCGAAGTTTTTTTAAGCCAATTTCCCTTA
GGGGATGGTACAATTTATCTTTAAAACCACCAAATTGGTTTGGTCGATGA
ATGAAAATATGCACGAACTAACGAACACTTTTCCTATCGAAATTTGATCA
TTTTATGATTTCAATTCGTGATTCTCTAAATTAGATATCAGTCTTAAGTC
TTCAGCTCCAAAAATGGTATTTTAGTATTTTTGAGTTCGAAGAATTGAAA
CAAACTGATGGATTTGCAAAATTCTAAAAAATTCAAAACAATTCAAAACA
ATTCTAAAATGAATTTTAAGTTCAATAAGTGACTGCGGAAAAATTTACAT
TAGACTTATCGCTTAGGAACTTAGGATCTCAGGGTCCAAAAAAGCTTAAA
TGTCGCAACAACGCTTTAAATATAACCTCATCCCACGCCCAAATATCCTA
AGCAAGTTAAGTGAAAATGCTGAAATCGCCATTATTGCCTAATTTTCATA
TTCTGAAAGACGACGAAACAAACAAAAATCCAAGTTTATTTTGACCGTGG
TTTGTAGAGATGTGAGATCTTTGATACAGAATAGTGAGACATAGGTGTTA
TGTTATCTGACACCCAGGTGCAAAAAATTTCATCCGACATGCTAAAGCTC
TGAATGTTGGAAAAATTTTCAAAATCTGGAAGGTTTAGATTGCGAAATTT
AACAAGATCGCGTCAAGGGTTTTGCAGCGGAAGGCCTGGACCTCAATTTG
CGGGTCCAACTTTTTAGTTTCACGCGCAAGTGTAGTTGAATCCGACTGGT
GATGTGGCAACCATTAAAGGCCGACTGTCGCTCCCTCTGATGGGAAATTG
GCCGCTCCTTTAGAACTTTAACGTGGGCGGCCGCCAAACTGCCATTGGAA
TATCAGACAAGGTTTTTCTGAAGGAAAAACGTTTTATTATTGTTTCTTTT
ACAGAACAGTCCTGAAGAGGATCAACTTATGAAAGAAATCGAACAAATAA
ATAAACGAACAAAAGAACTTTTAAAAAGACTTGAAGACCTTCAAACTGAT
GTCAAAGATGCTTCGAAGGTAAAACAATCGTTTCTTTTTCAAGGGGAACA
AAAATAATTCTAAGGATGCATTCTGCAGGAGGTCTAGTTTTCAAAAGTTA
TACTTTTTGATTCNTCAAGGGGAACAAAAATACTTCTAAGGATGCATTCT
GCAGGAGGTCTATTCTTCAAAAGTTATACTTTTTGATTTGTTCCGTTCAT
CAAATCTAATTGATCATACTTAAAGGGAAACATTGATTGAACGTACACTT
CCATCATATGCTCTCAAACCTACCCTGGTGCCATTGTGGGTTTTGATTGG
TGAAAAAAGATTTGAAATGATATAATAACGTTTCATTATTGTAGGGATTT
CTGGATTCAGAAAAGATTATCGAAACTTATCAGAAATGCTCGAAGAATTT
AAAAGGTGTCGCAGAGGGCTTCATGAAGAATCTGGAAACATTAGACGCCA
TGGTATGTATATGATTAATTATCTAAATACTTATCATTTGAATCGTTAGA
TTTTGATTTGAAAAGACATCAACATAAAAAATTTCTGCCGTTCTTTATTG
CCCCCTCTTTATTGAATGGTGATGCAAATTGAAAGAGCTAATGAATGTTA
TCGTATCTAGAATATTTGCTCTGCAACCTCAGCTCTTTGAAACTGATCCT
GACTCTATTCGAAACTTTGTCCATATTTGTTAATAATTTCGAATATTTGA
ACGGTATTTTTGGTCAATTCATTTTCAAACTTTCTCGTTTAGACGATCGC
TTCACAATATACGGCCATCCGTGAGAAAAGGAAAGACGCCATTCGAGATA
TAAACGTAAGTAAACGATAGCGCTATGTTTTGATGCAAACATTTACACAA
TCACGTCATGGTATCATTTATTTTACCCAACATTCAACTAAACTAAAGCT
GGACAAAAAATTTGTCATTTTTAGGGCCTTGGGACAAGCTTTCAGGCCAA
AATAAGGAAAGAAATTAAAATCTAACTTATTTATTGATTGGAGTAAGCAC
GATCGTGGTAGTTTCTGAAAAGCAGCAGGTTTTTTTTCTCAATTATGACA
ATTTCAGACATTCTCGATTTGAACGTCACCACCATAGAATATTTTTTCTT
TTCTATTGCGAACAGAATTATCTTGGACGAGCTGATAAGCAGATTGACGA
ATTAGATCATATTCTTGACACGGAATGATGTAACACAAAGAAAAAATTAT
TATGGAATGGAATTTTAAATTTCAACTCTTTAATTTCAACTTACTGGTTT
TCCTGAAATATTACTTGTATATTGTAAAACAATTAAATGTAAAATTTTAG
GTATTTATATCGAGTTTTTTTTTGTTTGTAAATACTTTTTTATTGATTGC
ATTCGAATATATAGACGATGGGAACTTCCAGCGGCTCTCAGGCTCAGATT
GTTTGTTAAATTGTTCCTATTTTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005262XLOC_005262Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009396-exon-sc0000093-1575043694:196454..196600TCONS_00009396-exon-sc0000093-1575043694:196454..196600Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1575043694:195833..195915TCONS_00009396-exon-sc0000093-1575043694:195833..195915Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1575043694:194733..194846TCONS_00009396-exon-sc0000093-1575043694:194733..194846Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1575043694:194299..194406TCONS_00009396-exon-sc0000093-1575043694:194299..194406Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1575043694:193946..194008TCONS_00009396-exon-sc0000093-1575043694:193946..194008Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1575043694:193324..193635TCONS_00009396-exon-sc0000093-1575043694:193324..193635Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1510915933:196454..196600TCONS_00009396-exon-sc0000093-1510915933:196454..196600Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1510915933:195833..195915TCONS_00009396-exon-sc0000093-1510915933:195833..195915Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1510915933:194733..194846TCONS_00009396-exon-sc0000093-1510915933:194733..194846Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1510915933:194299..194406TCONS_00009396-exon-sc0000093-1510915933:194299..194406Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1510915933:193946..194008TCONS_00009396-exon-sc0000093-1510915933:193946..194008Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1510915933:193324..193635TCONS_00009396-exon-sc0000093-1510915933:193324..193635Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1491911889:196454..196600TCONS_00009396-exon-sc0000093-1491911889:196454..196600Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1491911889:195833..195915TCONS_00009396-exon-sc0000093-1491911889:195833..195915Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1491911889:194733..194846TCONS_00009396-exon-sc0000093-1491911889:194733..194846Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1491911889:194299..194406TCONS_00009396-exon-sc0000093-1491911889:194299..194406Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1491911889:193946..194008TCONS_00009396-exon-sc0000093-1491911889:193946..194008Clytia hemisphaericaexon
TCONS_00009396-exon-sc0000093-1491911889:193324..193635TCONS_00009396-exon-sc0000093-1491911889:193324..193635Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:193324..196600 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.256973	0	0	0	0	0	0	1.42055	0.292504	0.9605	0.959055	2.79793	1.88386	0.406106	0.223984	0.881694	1.64892	7.88496	13.5005	2.56109	2.24533	0.656182	0.646887	0.373173	0.261362	2.06947	1.61197	0	0
Blast
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BLAST of TCONS_00009396 vs. Swiss-Prot (Human)
Match: BAG1 (BAG family molecular chaperone regulator 1 OS=Homo sapiens GN=BAG1 PE=1 SV=4)

HSP 1 Score: 76.2554 bits (186), Expect = 7.212e-16
Identity = 39/129 (30.23%), Postives = 74/129 (57.36%), Query Frame = 3 
Query:  150 RTLNEYHSTLSDLGVKNKSKIMVIGKKNSPEEDQLMKEIEQINKRTKELLKRLEDLQTDVKDASKGFLDSEKIIETYQKCSKNLKGVAEGFMKNLETLDAMTIASQYTAIREKRKDAIRDINNYLGRAD 536
            ++L E  + LS LG+++  ++M+IGKKNSP+E+  +K+++ + K  +++  +LE+L  ++    +GFL  +   E   K  + +K   E FMK LE +D + +   +   R KRK  ++ +  +L   D
Sbjct:  195 KSLKEMETPLSALGIQDGCRVMLIGKKNSPQEEVELKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSRLKRKGLVKKVQAFLAECD 323
The following BLAST results are available for this feature:
BLAST of TCONS_00009396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BAG17.212e-1630.23BAG family molecular chaperone regulator 1 OS=Homo... [more]
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