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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009392 ID=TCONS_00009392|Name=TCONS_00009392|organism=Clytia hemisphaerica|type=transcript|length=556bp
CATCAGCACCACTGTCGACAAACAACAAAGACCATCAACTGAACTTACTT
TCATATATGACGGTTGAACGACCTACAGGTGCGAATGGCCAACAACCTCC
TGAAAATACGTCTGAACCTGATGCTGGAGGAGGTATGAAGAGACCAATGT
CATTACCAGCCCTCCGTTCACGGTTGTCATTGGTAACCGAAGAAGATCTT
GTCGATCATTATCGAAGATCAGTAACGACTTGGCAACGCATGGAAGGAGA
TCGGAAAGTCACTCCTTCGCCTATGATACATCATTAAACATATATGGTTT
CCTTAACGCGTTTCCATGACAATTTTCAATTAACTAATGGAGTCCATTTC
AGAAGAAGgaatttattttgcttttttggTGAGTGTTTTCTTTAACCTGT
GAAAAGAACTTACTGAAGAAACTCTCGGTTCAGTGGGATGTTGTCGGGTA
TCTGTAAATACACTATGGGTAATAGAAAAGCTACAAGAGTTTTGACTTTT
CTCATTTTCAGTTGAGCTTAGAGTCTGAGAATGGGACTGGAATGTCTGTG
TTTGTG Run BLAST on NCBI transcript from alignment at sc0000093:132931..135392- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009392 ID=TCONS_00009392|Name=TCONS_00009392|organism=Clytia hemisphaerica|type=transcript|length=2462bp|location=Sequence derived from alignment at sc0000093:132931..135392- (Clytia hemisphaerica)
CATCAGCACCACTGTCGACAAACAACAAAGACCATCAACTGAACTTACTT
TCATATATGACGGTTGAACGACCTACAGGTGCGAATGGCCAACAACCTCC
TGAAAATACGTCTGGNGAAATTTTCACATTTCAGCAAATCCATCCCTCCC
ACATCAGCACCACTGTCGACAAACAACAAAGACCATCAACTGAACTTACT
TTCATATATGACGGTTGAACGACCTACAGGTGCGAATGGCCAACAACCTC
CTGAAAATACGTCTGGTAAGTTTGGCATTGATTAGGCTTTTTATAACTCT
ATTTTATACCTTAAGGGAACTTATTTTGGCGGAAACTAATTTTGACGAGC
GGCAAAAATTCTGAAAATTTTTAATTTTGGCGAAAACTTTTTTTTGCGAT
TGATGATTTTTTTTTTAATTTTGGCGGGAACTAATTTTGGCGAATGACAG
CGTAAATCTGTTCTATTTTGCCTTGTTTGAAGCTTTTTTGTGAACTCAAG
AAGTTATTTATGCAAAATACCAAAATATTTAATTTTGGCGGGAACTAATT
TTGGCTAATTTTGTCTAAATTCGCCAAGTTTGCCAAAATTAGTTCCCGCA
AAAATATTATTCCCTTAAAGTAATACTGATACCTAAGAACATAGTTTACT
GGATGGTTCAAAAACCCCTATATAATCAAAGGCCAGCCACCCTACATATA
AATTTTTTAGACGCCCTTAGTTGTTTCTAACCCCCCCCCCTGTTTCTTTA
TTTTTGAAAATATTTTCAGCTATCGAAAGCTGAATTGCTCTAAATAGCCT
GTTATTAGCTTATAATTACCTTATCTTGGGGTATTTGGAGGTACCATTTT
GGACACCCAATACATACATCACCCCCTCCATTTTTCGGACCCAGGCCTAC
TATTCCAGACCTTAGAGTCTTTACACTGCGATCAGTTTTTAAACCAACTC
GACCACCCTTCACCCAAAAAAAGCTCGTTTTTCCTAATTTCTTGTACAAA
GACGTAGCATTTAAGTGTGCTAAATATGAAAAAGTTAATTTTTCGAAAAT
ATCTTGGGCCCAAAAATGCCCAAAAATACCCAAAAATAGGGTTTTTTGGA
CTTTGTAAAAAATCTGTTCAATAGTTTTTGCTTAATTTTTGTACACAGAC
GTAGCATTACAGTGTGCTAAATGTGAAAAAGCTCATTTTTCGAAAGAAAT
TATTCAGTTTTTGTTTTTACATTACCTTCATTAAACTTTTATTATTCGTT
TTATATAAACAGGTAGGTCCATACAAGTATCGCTTGTTGTCTGCGAATTT
TCAACCTCGTATCTTTGATCGAAGTTTTTTTTTGAAAGTGGTACCCGCCA
TTGAAGTGTTAAAAATGAACAACAAACGGTGCCACATCATTACAAGTTAG
TATTCAAAGAAAAGTAGATCTAGCGCTCTCGACGCATATTCACCGCTATT
GAGAAATGCCACCATTAGTGTACCACTTGACTTTCAATGAAAACTCAGAT
TAAAATGGGATTGTAAAACCACCCCTAGGGTTTATACAGAACTTAGTGAT
TTTGACGTGGACGTTTTGAATGTTAGATGAAAGTGGTTTTGACGTTTTTT
CACGTTTTTTCTGTGAATATTTCAACCTCATATCCCTTTTCCACAGAACC
TGATGCTGGAGGAGGTATGAAGAGACCAATGTCATTACCAGCCCTCCGTT
CACGGTTGTCATTGGTAACCGAAGAAGATCTTGTCGATCATTATCGAAGG
TATAGAGAGCTTGTTTTCTATCTTGTTGTGTCGAAACCAGGGAATTATCG
ATTAGTATTTTTAGACTTTGACTTTAAGCACGGGAAAAGATGGACAAATC
AAGAAATTAACCGGGGTGAAAAAATCATTTACGTTCCTAGTGCCGTAGCT
ACTGGGAGGGAGGGGGCTAGGGGTAGCTTAGCCCCCCCCCCCTTCCCCCA
ATAATTTTTTTGAAAGTGATTTTTTCATAAAATGGAATATTTTACCTATG
AATTTTGCCTTTATTCAACTTATTTTAGTTTTTTGAGTGTGTTTTTAGCC
AATTTAGAGATCTAGATTTCAAAAAGGTTTTTCGCTCATATTCCCCCTAA
AATAATGTACCTCTGGTTTATAGATCAGTAACGACTTGGCAACGCATGGA
AGGAGATCGGAAAGTCACTCCTTCGCCTATGATACATCATTAAACATATA
TGGTTTCCTTAACGCGTTTCCATGACAATTTTCAATTAACTAATGGAGTC
CATTTCAGAAGAAGGAATTTATTTTGCTTTTTTGGTGAGTGTTTTCTTTA
ACCTGTGAAAAGAACTTACTGAAGAAACTCTCGGTTCAGTGGGATGTTGT
CGGGTATCTGTAAATACACTATGGGTAATAGAAAAGCTACAAGAGTTTTG
ACTTTTCTCATTTTCAGTTGAGCTTAGAGTCTGAGAATGGGACTGGAATG
TCTGTGTTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009392-exon-sc0000093-1575043694:135279..135392 | TCONS_00009392-exon-sc0000093-1575043694:135279..135392 | Clytia hemisphaerica | exon |
| TCONS_00009392-exon-sc0000093-1575043694:133644..133746 | TCONS_00009392-exon-sc0000093-1575043694:133644..133746 | Clytia hemisphaerica | exon |
| TCONS_00009392-exon-sc0000093-1575043694:132931..133269 | TCONS_00009392-exon-sc0000093-1575043694:132931..133269 | Clytia hemisphaerica | exon |
| TCONS_00009392-exon-sc0000093-1510915933:135279..135392 | TCONS_00009392-exon-sc0000093-1510915933:135279..135392 | Clytia hemisphaerica | exon |
| TCONS_00009392-exon-sc0000093-1510915933:133644..133746 | TCONS_00009392-exon-sc0000093-1510915933:133644..133746 | Clytia hemisphaerica | exon |
| TCONS_00009392-exon-sc0000093-1510915933:132931..133269 | TCONS_00009392-exon-sc0000093-1510915933:132931..133269 | Clytia hemisphaerica | exon |
| TCONS_00009392-exon-sc0000093-1491911889:135279..135392 | TCONS_00009392-exon-sc0000093-1491911889:135279..135392 | Clytia hemisphaerica | exon |
| TCONS_00009392-exon-sc0000093-1491911889:133644..133746 | TCONS_00009392-exon-sc0000093-1491911889:133644..133746 | Clytia hemisphaerica | exon |
| TCONS_00009392-exon-sc0000093-1491911889:132931..133269 | TCONS_00009392-exon-sc0000093-1491911889:132931..133269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000093 | supercontig | sc0000093:132931..135392 - |
Blast
The following BLAST results are available for this feature:
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