TCONS_00009384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009384
Unique NameTCONS_00009384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009384 ID=TCONS_00009384|Name=TCONS_00009384|organism=Clytia hemisphaerica|type=transcript|length=1274bp
CGCGTACCCTGTGCCCTGTGACCCGTACCCCGTGCCCTGCCctgtgaccc
gtgtttcgaactatcCGTCAAGCGAGTGAGTAAAGAAGACGCAGGTCTAT
CTTCCAATATTTCAGTTTCGGGATAATttatcctaatttgcaatagttcc
gGACTGTTTTAAAAACAACTACGGACGTGCTGGGAAACCACAGAAGGAAG
TAAATATGGCgtaccaacaacaacaacaacaacaatttgGTCAACCCATA
GATCAGAATTTTCTCTGGaatatatttcaaaaAGTTGACAAGGATAGAAG
TGGAACAATAACACATGTAGAGCTCCAACAAGCACTTTCAAATGGTACTT
GGGCACCGTTCAATCCAGAAACCATACGGTTAATGATAGGAATGTTTGAC
AAAGACAGGAATGGCACAATAACATTTCAAGAATTCGGTGCATTATGGAA
ATACGTGACCGACTGGCAGCAGTGTTTTCGTGGATTTGATCGAGACAATT
CTGGAAGTATAGATAAAAATGAGCTGAAACAAGCTTTAACCTCTTTTGGT
TACCGATTATCTGATAAATTTTACGATATACTTGTGAAGAAGTTTGATCG
TTCGAACCGTGGCAGTATTACATTTGACGATTTCATACAATGCTGTGTTG
CATTGCAAAACATAACGAACACCTTTCAACAGTACGATACACAGAGGTCA
GGCTGGATACAATTGCAATACGAACAATTCCTATCTGCAGGTTTCAATCT
TAAAACATAAACTCttaaattaaataattttcctttgtGCACATATAAAC
AATGGTCGAATCCATAAATGAGTTATGGGTTAATTTTGACTGTATTTTTT
AACTCTTCATTTCTCGGtcagagttttctatattttcctcgcctaaaggc
tcggaaaatatgacgaaaattctgaactcgaaaaatgtatcccatattgt
actctgtACCGTGTGATAACTGTTACTAATTTTTGTATATGTTGATAACC
TTGCGTACTTACATTAATTGGTTTCCCCCGAATTGTATTAAATAGCTTTC
GAACAAGAACATAAACTCCAATCAATTAAGGCTGGGTTAAATAAATGTTA
CCTAAAAAATGTGTATGGAATATCATCACAATTACGTTagggaatttttt
ttgttcttcatatattttgtacaaaaaacTTTGTATTTAAATAATTACGA
CTTTTAGGGCAGACCTTAATATTATAGTAATTGATTTGAGGAAATATTCG
AAATAGATAATCGACATACTGTAT
Run BLAST on NCBI

protein sequence of TCONS_00009384-protein

>TCONS_00009384-protein ID=TCONS_00009384-protein|Name=TCONS_00009384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MAYQQQQQQQFGQPIDQNFLWNIFQKVDKDRSGTITHVELQQALSNGTWA
PFNPETIRLMIGMFDKDRNGTITFQEFGALWKYVTDWQQCFRGFDRDNSG
SIDKNELKQALTSFGYRLSDKFYDILVKKFDRSNRGSITFDDFIQCCVAL
QNITNTFQQYDTQRSGWIQLQYEQFLSAGFNLKT
Run BLAST on NCBI

transcript from alignment at sc0000093:609757..621433+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009384 ID=TCONS_00009384|Name=TCONS_00009384|organism=Clytia hemisphaerica|type=transcript|length=11677bp|location=Sequence derived from alignment at sc0000093:609757..621433+ (Clytia hemisphaerica)
CGCGTACCCTGTGCCCTGTGACCCGTACCCCGTGCCCTGCCctgtgaccc
gtgtttcgaactatcCGTCAAGCGAGTGAGTAAAGAAGACGCAGGTCTAT
CTTCCAATATTTCAGTTTCGGGATAATttatcctaatttgcaatagttcc
gGACTGTTTTAAAAACAACTACGGACGTGCTGGGAAACCACAGAAGGAAG
TAAATATGGCgtaccaacaacaacaacaacaacaatttgGTCAACCCATA
GATCAGAATTTTCTCTGGaatatatttcaaaagtaagaggaacattaaaa
tttattttaattaatgaaatacaaataaattaCTTAGCCCAATTTGAAGT
AGCTAGCTATCTTTTAGTGTTTTTGAAGTAACTCATCCTAAACTTGATTA
CCTAAAAACTAAATACAATAATCTAGCTATCTGTCCCGCCCCCAACAATC
TAAGTTGCgttggtctaatatcaacatccctcttctaattgtGACACCCA
TCTTTAGAGCTGGGATTAATAGGAATATCGGAATCCTTGATTGAAACTTA
TTTCTTTGCTTTATAGCAGTGATTGAATAGCGTTCGGTTATCGTGGTTAC
GACGACCAGAAATAAAAAACCATTGACCCAAAACTTTCCTAAAATTTCca
gatttaaagaaataattgaCCAATATTTGATTGATCAATTTTAATCCTAT
ACTGTTTGATCAATGTTAGTCCAGTAGAATTTTCATAACATCTTTGAGGC
AAAGCTTTCTAGAATTAAGTGTTAGATTtgaccattttcaaaaaaaattg
ttttctttgctATGTaatctaccgtcaactgctctaacttgggacaattg
gtcgaaacatgggactgttgatatctggcctgtattttcacttactgtta
aatctctttgataacaaatttgttttgataactccactgTCCACCAAGTT
Tagcaatcatactttctgtcataacatgtcacaataactttcactgatag
catagcgcgccctttttaacttttctgttttcattcaaaatgactggatg
ccgattggagaattagagagcgCCCGCCCCACCCAACCGCCTAtcacccg
atgggattaacaaataacgagcgTGTAACTTGCcgtgcgagtgacgtcaa
acgctccatcgtttagCCGCTAATTTgatcttcttcgttccagacattcg
tgtgtgttccactacgaatttttttcatatttcgatttaaaagcctactc
tcagttaggaacatttggcgagtttcctatacgcggccgcaatcaaaaaa
attataacatcactcattaaaaaatgactttCGTGtctttttccactttt
tttagcctagacgatgtagcaaacattttaagtataagcacactgtgctt
ttaattggctgatttatttttttgcgttggaaaaactttttcaaactttc
agcaatgattgaccaaactgttacaatgaaaattatccagcgcatttttt
atcttcttaccttcttcattttcaatgaagcactgaaagtttactgaagg
taagcacataagatattcttataattaatgatattcattgaaacatgctt
CGTTGTGCACTGCGGTGGAGTTGCACTTGCGCGGCAACTAAGTCGCCTTC
tggttggaagatcatattgggcgttttggcgttaccatcCTCGAAGCAGC
GGGCGCCTTTGTCTTCCCGCAACTATTTCtgccattttagatggccttaa
caatagatccaaaagagcgcaataatcttggaagataatttgttttggtc
tccggctttgggatgTAGCAATGTTCTTGGTTTAGGTTAGCCTCCACCCA
TGTTTTTATTCTCactaattttaaattctttgcCTTTGTTCACCTTACTC
TTTCTTACATCACTCATTTTGAAGCCTTTCTCTCTGAaaccataaaaata
ttttaaatgtttatagCTATTTATCTAATTTATTTAACtcatttagtatt
ttttttttttttacttgaacttCTCATCACCGCCAATTTACATTTTCAGC
TTGAGGATTCAACTTAATTTCAACTCCtacatagtttgcagaggggtatg
aacccccctaggtttatttcatccccccctatatacccatcccccccttt
tgtaatgaaatcttatcccccccttctttttacagaaaatccgcTTCGAA
GGAAACTCTctttcccacctaccagcaaaattatcaacaagaaagagtat
gaagtaTTATAGTCACGAGCCAACAATGACAGAATATAACTGTGACAATT
TGTATTTGATTAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtattaaaaagg
gggggtgcaaactatgtcCTAGTTTTCAATACCGCCCTGCCTTCACATTT
TGGTATTCTCAGCACCAAGCCATTATGTTAAGCTTTGTGTCAATATTCTC
AGCCTTAAATTCTCAACTTTACTACTTATCCTCGGTTTGATATGAGCTTT
TTCTTTAggaattttatattataaattatttttgaataaagaaccaaaca
ttttattttaactcattttcattttatttttttgttaaatgtttttataa
tgTAGGGAGAACGAACATGTATGTTTTGTTACTacttaagagccagtttt
tttaagaatggggcagtttggggcagttccaatagtttgaaacttagatt
tttttcatttttggatatgttgttaagtacaatgaactgaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAATGAGTA
CCCATTGCtacttgattcttgattttgtgaaagcatcctatagatagttc
aagaatttatcagaagttggaaccttttcgtttcttttaaagattagggc
tagctcaaagtcaattttaactctaaaatcctaaaaatcttgacagaggt
gaactttaccaaccccataaaacaattttgccaTCAACCTTTCTGCCCTT
AAATACTTAGAGATAAGtccaaaagtacaaaatattccTAAACCTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCAAACAGGCTGATAGCAAA
ATTGTGTTATGGGGTTGGTAAAGTCCACCTTTAaagatttgagagtttag
aagcacattttgacagacttgatccttcaatggtagatcaggaggtaaag
atcttgatgaatgtttgtactgcccccatgaaactttccaaaaaccaaga
ttttattatctgagtgggctcattttctgttcaatcttgagcaaaaattg
ttgttttgagcaacattgtcaagatttttaggattttagagttaaaactg
actttgagctagccctcatctttaaaagaaacgaaaaggttccaacttct
gataaattcttgaactatctataggatgctttcacaaaatcaaaaatcaa
gtagcaatgggtactcattttgggcaaaaatttcagccaaaaatgtactt
taaagtcaattttacaaaattaagggggtcaggggagtttgaagccgcct
ttgagtgaaaattcagcctctataagctttcgaagagtaccatatttgat
tttcctagaaacctttCTGGAATGTGATGATGAAGcatgattttcagata
aaatttactttctaactgccaattactggctgcaatagaatgacctcagc
tctagtcaaaaaattgaaaaaaaagcctttttggtccaaaaaagcacatt
tgacaacttttttcacctagtttcattgtttttatataaaagattcatca
tagcccttacattataacaaattcagtgacctagacccctttgaagtttg
ccaatgggccaaaatatcccgaattttagtcatttttcgagcgatgttaa
gaaaatttttaaatcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGATCCTAAGAGACCA
GGCGGTTGTCTTTCAGGAACAGAAGAGTTGGaggtcagacaatgttggga
tttctaggaaaattgggctaaagttggtacttttttgagaccttgttGGC
TTTTTgggcctctaggggccagtagggccggaattttttattgcaaccac
ttcaaatggatagaccagggactaaactaccagaaaatattattttgagc
agtaagaaactcccctgggacaggtcagatggctctaaaatacccctaaa
atcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttactcagttc
attgtacttaacaacatatccaaaaatgaaaaaaatctaagtttcaaact
attggacctgccccgctcttaaaaaaactggctcttaaacatatagatag
atagattggttgtttttgatggaaaatggtaagaaacttaagtttacaaa
cacgtgtcatttagtttttgctggcttatagaatggcaggatcctggatg
gtttccctaactgactctgtgcaaaagagaaatcgtgtattttttaatac
accgttcactaactcaaatcaaatgactttggaggttcggtgaaatggtg
gccgaatttctgtcccatgttttgtcagatagtcccaaattagagcagtt
gacagtagcTTTCATTATTTAGAAATAATTGATGTCATCAAAACGAAACA
CCCAGAACTATGGTTGGGTGTTGGGTCACACCAAACACGAGCACATCACT
AAAAATAACAGAGATCATGCCTAATCAAACATATTCAAATAGGGTCAATC
AATTGAATCAAGTGATTTGGCGTTTGAACGATTCGATTGACCCTCTGGAA
TTATGTGATTTTCCATAGTGgatatgaaattttattttgagaacTGATAA
CTCAAAAActactgaaccaaatttaaaaataacagcttaaaatttaagtt
agagcTTCCTCTTTCTTATGacatttaaaattcaattttatatcTTGTCC
CATTCTCCTTAGTGGAATTCTCCGGGAGTAACTTTCTTAGATTACTCTTG
AATTATTAAATTTTCTACACTATTGATTCAAAGCAACCTGGTAGAAGAAA
GAAATGTAAGCTATCTGAAGACATCAAGAAGCAATTTGTACAGGGATTAA
AATGTGCGTGATAGTTTTTAAGAAGAAAGACGCAGAACGCAAACAGAAAA
AAGGGCCATATTAAAATGTCATCAATCAATGAGAAAGAAGTTGATGAAAT
GAGATTAAAGAAAAGTCACTGGAAGGAGAGAAGAAGAGAAGAAAAGGAAA
AGTTAACAGATTGCCCTCCTCTCAGTCAGGAAGAGTGGAACCAGTAAGAA
AAGAGTAGTCTTGAACAGAGCGAAGCAGAAGCAGAAGTGTACCAGTCAGC
TAAGAcctatttttctttcctttattcGTTTGGGAGAATGCGACGGtgtt
ttgaataactaattactccagcagaattttttttaatgataacgtcatta
attgatttgtcttttacaacacaTCTGTTACCTAGGTACAAGATAATGTA
TCCCGTTTAtactagcctggagatccatgctatcatttcttattctatat
actgatggcgaaatatatagcatgatatgggctgagagtttgaatttccc
agatcctaataacgattgaaaacatagccaatcaaattttgttattcttt
tactggtcacactttcttagagaaagcgcaagttccgaaatttggttttt
attttagtaagtgaggacagcgctaaattcgaatttccaactgtaaattt
tttgaggcagaaatctgcctcacatgtcatacccgtcctgtatacatcag
gGTCTCCTGTCTACGTTTATACTggctggagtaatttgttattcaataga
ccttCTCGTTCTCCCAAACGACTATCTATTTATCTTTTAGTTATTCAAAG
TTTAGcttttcttttatcttttataTATCCAAAATGAGGGTTTGTAATTA
AAATTATACATAAGGATTTTAATGATACCTTTATTAACCAGAATGggctt
tccagaaaaaaatttaatatgggggtggaggatataacattttttggaaa
tttacccctggacaaattctgacacccttcccCCCGGAGCAAGTTTGCCC
CCCAAAATAATACAAATTTTTCGGATTAATCACTACCCCCAAACGAAATA
TCCAATATATTCTCCACCCCAAATGTACAAAAACTTTCTGGAAGAGCCAA
GTAAGATCAGAGTCATAAGAAGAAGTATATTTGTTTTTGTAACTAATAAT
GCGTTTTCTTTTATGATTTGTAGAGTTGACAAGGATAGAAGTGGAACAAT
AACACATGTAGAGCTCCAACAAGCACTTTCAAATGGTATGTATAGTTCTA
AAAATTATGTTGTTTgatggttgtttttttttaacttttaaatgaaaaat
tttgagcaAGCTATATACTTTAATTTTCTTAATCAAATATTATATAGGTT
TTTATAATCGTTTTAGGTACTTGGGCACCGTTCAATCCAGAAACCATACG
GTTAATGATAGGTATACTAATATTTTGTACATGTCCAGTCTGTTCTATGT
TCTAGCCTATGCTAGACGTCATctgcgttttttctacgcaattaacgtct
agtATAGCCTAGAACGGACTAGACAAAGACAGAGCGGAAAAAGATAACCT
TAAACTTGTTCATCTTCTCTTTCGATTTTTGTAACCCCACCAGGGTAATT
gatgtctttttttctatttgagaTACGGTTTTGGCTGTATATTTTTCACT
CGAAAGATTTCTTGTCTCATAGATGGAATTACTTAACATTCTATCTCATT
TTCTGATAAAATTTGCGATTACTACCCCTAACATTTATACCATGTATTTA
TATGTTAATTGGGTCAAGGGTTAACTTTGTTACAGATATGATACAGATAC
GAGATGTAAAGTATTACCCCAAAGTTACTATATTAATGAATATTTATGTC
TGATAAGAAGAGACGGATTGCTTTCAAACTCACTGACCACTTTGTTAATT
CTTAATTGGGTTTCCCACCTGTTCTGTGGCACAGGTATAAATCAGTTTTA
TTGTGTTTGTTTATAAAGGAATGTTTGACAAAGACAGGAATGGCACAATA
ACATTTCAAGAATTCGGTGCATTATGGAAATACGTGACCGACTGGCAGCA
GTGTTTTCGTGGATTTGATCGAGACAATTCTGGAAGTATAGATAAAAATG
AGCTGAAACAAGCTTTAACCTCTTTTGGTTAGTGTTGtgaaattatgttt
ttttttttaaatatttctcaaGCTATTTATCTAGAGTCAAACCGTGTGAT
TGATTCATAAATTTCTAATGTCCTTGTCATTGCTTGCAAAATTCCTAAAA
GTTGGTTCTAAATTTCCCTccttcttttaaaatatttttagtacACATTT
CTGAATTAAATCACATTCATGAATGTTCCATTGAATGAAGtagaattttt
agaatttttagaatttttttgcaaaatgataaCCCAAACTAAAATGACGA
TTCTAGTGCTACTGCAAGtggtttgaaatgaaataaTCTAAAACTTTGCG
AATTATATCTTTTgcattttaaatcttttttttaccgtCAGGTTACCGAT
TATCTGATAAATTTTACGATATACTTGTGAAGAAGTTTGATCGTTCGAAC
CGTGGCAGTATTACATTTGACGATTTCATACAATGCTGTGTTGCATTGCA
AGTAAGTAACAATTAATATCTTATACAGTGTGTCCTATATAAAGCAGTCG
TGTTCAAACTATAGATATAATTTCAATGAAATTCATACTAAAATAATCAG
CTTGAaacccgggggtactaggttttGGAGGTGATGGGTATGTCCGTTCC
GAAAATCCGTCTACACAGGGACCCTTATTtctcgcacatacccgacaccc
cCTCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcccccccccccccccttgaacCCCTTGAAAAGGCAAAATATGACtaat
taaaaagttttctttgtatACTTGTTAATGCTAACATGACAACTATATCG
TATTCCCGAAAATGGGCGCCGCGGCACTCTTAGACAGTTTGAGAcaccta
aaatttttgaaatatctattTTCAAGGGCCTCTGGGGTCAAGTAAAGATG
TTTTTTGccatagttttttttttcatttttccttatttcctcattttgaa
cagttttgagctcaaaaaaatcgaatgtttatttaaagaaaattataagG
AAATTTTGTATTGGAATgtcaaactaaagaaaaattttcacttactgCGC
CTTAAAAACACTATAAAACGCTTTTTAATTGGATAagactttttaattta
atttgatttcCTCTGCAAATAAACAGACAGGATCATGCCCCCTGGCTTCC
CCGTTGACAGGGCCTATTGTAGCTTGCTCATGGCGTTGATGGCGTTTTTA
GCTgaggaaattttattttatttacttaTCTCTCATCAGAGCATGACATC
TGGCTTTATGCAACACGACACAAATCGTAACGGATGGATAGAGTTAACTT
ATGAACAATTTTTGACACTTGTTTTTACATTGAAGAAATGAAAATCAGTT
TCCAAATTAAGGGTTTTTTTGCAACCTATTGAGGGGCTTGAAGGATATTA
AACATTGGATATAATTTAAAATGATGATGACATTTATAAGAGATGTTGTA
TGATGGATTTGATAGGGTTGGCTTCTAGATAGGATAGTCCTGTGCCATTT
CGTATTTATTATGAATGAAATGATAATAATATTGATTGATTATTGAGATT
GAATGAGAGACTTTAATATTAAATGTTTTTACAAAGGTGTTACAATGTTA
GCAACGACACATTGATAAGTTATACCTTCAAAGAACCTTTGACTTCATAA
CTGTCTCGAATGTTTTCTGATATAAATTTCAAGTAAAGATACAGCTGAAT
TTATTGGCTATTAAAAAataagtaccttaagggaacttattttggcggga
actaattttggcggattagcaaaattagttcccgccaaaattaaatattt
tctttgctcactcaccaaaataagttcccaccaaaattaaattttttgtt
tccttgcctaaataacccctgaaattcatcaaaattgctcaaaataaagc
aaaatagAACGGATTTACGCTgtaattcgccaaaattagttcccgccaaa
attaaaaaaattcactattcgccaaaataagttcccttaaggtatattaa
taaaattacattgaaaatttaaattttaaacagATGCACTAAATTGTACA
TTTAATAATAATTATGAGTTGCTTTCTTCGATGAAATTGCACGTATAGGT
AGAAAAAACAGCATATAAAAGGACAACGATGTCGTTTGCATTTTGTGTTT
TCGTTGACCGTGTTTTAATCCGtccaaaaatttatttaccttaagagaat
aaattttggcggaaagaaatttagatttttgggccattcgctaaaattaa
ttctcgccagatttaaatttctttccacACTAATCTCCATTTCTCCTATA
AAGCCCTTTTTTCATCCCTTTTTAAGTTTAAgtattcaacaaaaaattaa
ttctGGCCAAATTTAGAGATTTTATTAAATCACCAAAATAGATTCCCTCC
AAATTGCACTAAAATTGGCGAGTGGTCTCATTCAccaaaattcctttttt
taagGTAGTAATTTTCTCCTTATGTTTGTCTGGTTGCTGGctttttcccc
aaaaaatttttttctcctgcACATTAGTTCTAATTTCGCCCTcaactttt
ttcacctttaGAACATAACGAACACCTTTCAACAGTACGATACACAGAGG
TCAGGCTGGATACAATTGCAATACGAACAATTCCTATCTGCAGGTTTCAA
TCTTAAAACATAAACTCttaaattaaataattttcctttgtGCACATATA
AACAATGGTCGAATCCATAAATGAGTTATGGGTTAATTTTGACTGTATTT
TTTAACTCTTCATTTCTCGGtcagagttttctatattttcctcgcctaaa
ggctcggaaaatatgacgaaaattctgaactcgaaaaatgtatcccatat
tgtactctgtACCGTGTGATAACTGTTACTAATTTTTGTATATGTTGATA
ACCTTGCGTACTTACATTAATTGGTTTCCCCCGAATTGTATTAAATAGCT
TTCGAACAAGAACATAAACTCCAATCAATTAAGGCTGGGTTAAATAAATG
TTACCTAAAAAATGTGTATGGAATATCATCACAATTACGTTagggaattt
tttttgttcttcatatattttgtacaaaaaacTTTGTATTTAAATAATTA
CGACTTTTAGGGCAGACCTTAATATTATAGTAATTGATTTGAGGAAATAT
TCGAAATAGATAATCGACATACTGTAT

Coding sequence (CDS) from alignment at sc0000093:609757..621433+

>TCONS_00009384 ID=TCONS_00009384|Name=TCONS_00009384|organism=Clytia hemisphaerica|type=CDS|length=3330bp|location=Sequence derived from alignment at sc0000093:609757..621433+ (Clytia hemisphaerica)
ATGGCgtaccaacaacaacaacaacaacaatttgGTCAACCCATAGATCA
GAATTTTCTCTGGaatatatttcaaaaAGTTGACAAGGATAGAAGTGGAA
CAATAACACATGTAGAGCTCCAACAAGCACTTTCAAATGGTACTTGGGCA
CCGTTCAATCCAGAAACCATACGGTTAATGATAGGAATGTTTGACAAAGA
CAGGAATGGCACAATAACATTTCAAGAATTCGGTGCATTATGGAAATACG
TGACCGACTGGCAGCAGTGTTTTCGTGGATTTGATCGAGACAATTCTGGA
AGTATAGATAAAAATGAGCTGAAACAAGCTTTAACCTCTTTTGGTTACCG
ATTATCTGATAAATTTTACGATATACTTGTGAAGAAGTTTGATCGTTCGA
ACCGTGGCAGTATTACATTTGACGATTTCATACAATGCTGTGTTGCATTG
CAAAACATAACGAACACCTTTCAACAGTACGATACACAGAGGTCAGGCTG
GATACAATTGCAATACGAACAATTCCTATCTGCAGGTTTCAATCTTAAAA
CATAAATGGCgtaccaacaacaacaacaacaacaatttgGTCAACCCATA
GATCAGAATTTTCTCTGGaatatatttcaaaaAGTTGACAAGGATAGAAG
TGGAACAATAACACATGTAGAGCTCCAACAAGCACTTTCAAATGGTACTT
GGGCACCGTTCAATCCAGAAACCATACGGTTAATGATAGGAATGTTTGAC
AAAGACAGGAATGGCACAATAACATTTCAAGAATTCGGTGCATTATGGAA
ATACGTGACCGACTGGCAGCAGTGTTTTCGTGGATTTGATCGAGACAATT
CTGGAAGTATAGATAAAAATGAGCTGAAACAAGCTTTAACCTCTTTTGGT
TACCGATTATCTGATAAATTTTACGATATACTTGTGAAGAAGTTTGATCG
TTCGAACCGTGGCAGTATTACATTTGACGATTTCATACAATGCTGTGTTG
CATTGCAAAACATAACGAACACCTTTCAACAGTACGATACACAGAGGTCA
GGCTGGATACAATTGCAATACGAACAATTCCTATCTGCAGGTTTCAATCT
TAAAACATAAATGGCgtaccaacaacaacaacaacaacaatttgGTCAAC
CCATAGATCAGAATTTTCTCTGGaatatatttcaaaaAGTTGACAAGGAT
AGAAGTGGAACAATAACACATGTAGAGCTCCAACAAGCACTTTCAAATGG
TACTTGGGCACCGTTCAATCCAGAAACCATACGGTTAATGATAGGAATGT
TTGACAAAGACAGGAATGGCACAATAACATTTCAAGAATTCGGTGCATTA
TGGAAATACGTGACCGACTGGCAGCAGTGTTTTCGTGGATTTGATCGAGA
CAATTCTGGAAGTATAGATAAAAATGAGCTGAAACAAGCTTTAACCTCTT
TTGGTTACCGATTATCTGATAAATTTTACGATATACTTGTGAAGAAGTTT
GATCGTTCGAACCGTGGCAGTATTACATTTGACGATTTCATACAATGCTG
TGTTGCATTGCAAAACATAACGAACACCTTTCAACAGTACGATACACAGA
GGTCAGGCTGGATACAATTGCAATACGAACAATTCCTATCTGCAGGTTTC
AATCTTAAAACATAAATGGCgtaccaacaacaacaacaacaacaatttgG
TCAACCCATAGATCAGAATTTTCTCTGGaatatatttcaaaaAGTTGACA
AGGATAGAAGTGGAACAATAACACATGTAGAGCTCCAACAAGCACTTTCA
AATGGTACTTGGGCACCGTTCAATCCAGAAACCATACGGTTAATGATAGG
AATGTTTGACAAAGACAGGAATGGCACAATAACATTTCAAGAATTCGGTG
CATTATGGAAATACGTGACCGACTGGCAGCAGTGTTTTCGTGGATTTGAT
CGAGACAATTCTGGAAGTATAGATAAAAATGAGCTGAAACAAGCTTTAAC
CTCTTTTGGTTACCGATTATCTGATAAATTTTACGATATACTTGTGAAGA
AGTTTGATCGTTCGAACCGTGGCAGTATTACATTTGACGATTTCATACAA
TGCTGTGTTGCATTGCAAAACATAACGAACACCTTTCAACAGTACGATAC
ACAGAGGTCAGGCTGGATACAATTGCAATACGAACAATTCCTATCTGCAG
GTTTCAATCTTAAAACATAAATGGCgtaccaacaacaacaacaacaacaa
tttgGTCAACCCATAGATCAGAATTTTCTCTGGaatatatttcaaaaAGT
TGACAAGGATAGAAGTGGAACAATAACACATGTAGAGCTCCAACAAGCAC
TTTCAAATGGTACTTGGGCACCGTTCAATCCAGAAACCATACGGTTAATG
ATAGGAATGTTTGACAAAGACAGGAATGGCACAATAACATTTCAAGAATT
CGGTGCATTATGGAAATACGTGACCGACTGGCAGCAGTGTTTTCGTGGAT
TTGATCGAGACAATTCTGGAAGTATAGATAAAAATGAGCTGAAACAAGCT
TTAACCTCTTTTGGTTACCGATTATCTGATAAATTTTACGATATACTTGT
GAAGAAGTTTGATCGTTCGAACCGTGGCAGTATTACATTTGACGATTTCA
TACAATGCTGTGTTGCATTGCAAAACATAACGAACACCTTTCAACAGTAC
GATACACAGAGGTCAGGCTGGATACAATTGCAATACGAACAATTCCTATC
TGCAGGTTTCAATCTTAAAACATAAATGGCgtaccaacaacaacaacaac
aacaatttgGTCAACCCATAGATCAGAATTTTCTCTGGaatatatttcaa
aaAGTTGACAAGGATAGAAGTGGAACAATAACACATGTAGAGCTCCAACA
AGCACTTTCAAATGGTACTTGGGCACCGTTCAATCCAGAAACCATACGGT
TAATGATAGGAATGTTTGACAAAGACAGGAATGGCACAATAACATTTCAA
GAATTCGGTGCATTATGGAAATACGTGACCGACTGGCAGCAGTGTTTTCG
TGGATTTGATCGAGACAATTCTGGAAGTATAGATAAAAATGAGCTGAAAC
AAGCTTTAACCTCTTTTGGTTACCGATTATCTGATAAATTTTACGATATA
CTTGTGAAGAAGTTTGATCGTTCGAACCGTGGCAGTATTACATTTGACGA
TTTCATACAATGCTGTGTTGCATTGCAAAACATAACGAACACCTTTCAAC
AGTACGATACACAGAGGTCAGGCTGGATACAATTGCAATACGAACAATTC
CTATCTGCAGGTTTCAATCTTAAAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005253XLOC_005253Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009384-proteinTCONS_00009384-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009384-exon-sc0000093-1491911889:609757..610038TCONS_00009384-exon-sc0000093-1491911889:609757..610038Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1510915933:609757..610038TCONS_00009384-exon-sc0000093-1510915933:609757..610038Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1575043694:609757..610038TCONS_00009384-exon-sc0000093-1575043694:609757..610038Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1491911889:617230..617291TCONS_00009384-exon-sc0000093-1491911889:617230..617291Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1510915933:617230..617291TCONS_00009384-exon-sc0000093-1510915933:617230..617291Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1575043694:617230..617291TCONS_00009384-exon-sc0000093-1575043694:617230..617291Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1491911889:617423..617467TCONS_00009384-exon-sc0000093-1491911889:617423..617467Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1510915933:617423..617467TCONS_00009384-exon-sc0000093-1510915933:617423..617467Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1575043694:617423..617467TCONS_00009384-exon-sc0000093-1575043694:617423..617467Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1491911889:618025..618183TCONS_00009384-exon-sc0000093-1491911889:618025..618183Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1510915933:618025..618183TCONS_00009384-exon-sc0000093-1510915933:618025..618183Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1575043694:618025..618183TCONS_00009384-exon-sc0000093-1575043694:618025..618183Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1491911889:618548..618657TCONS_00009384-exon-sc0000093-1491911889:618548..618657Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1510915933:618548..618657TCONS_00009384-exon-sc0000093-1510915933:618548..618657Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1575043694:618548..618657TCONS_00009384-exon-sc0000093-1575043694:618548..618657Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1491911889:620818..621433TCONS_00009384-exon-sc0000093-1491911889:620818..621433Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1510915933:620818..621433TCONS_00009384-exon-sc0000093-1510915933:620818..621433Clytia hemisphaericaexon
TCONS_00009384-exon-sc0000093-1575043694:620818..621433TCONS_00009384-exon-sc0000093-1575043694:620818..621433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:609757..621433 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.29	40.6571	33.5793	37.8283	34.7955	27.5951	44.8902	43.7908	33.9853	28.6376	21.6773	20.9239	9.68918	10.5716	7.89848	10.1186	14.115	18.0676	5.27207	6.64629	12.4772	12.2489	16.9384	16.067	21.6143	20.7518	17.9544	14.0965	13.6778	14.1795
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00009384 vs. Swiss-Prot (Human)
Match: PDCD6 (Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 7.239e-77
Identity = 107/167 (64.07%), Postives = 134/167 (80.24%), Query Frame = 2 
Query:  251 DQNFLWNIFQKVDKDRSGTITHVELQQALSNGTWAPFNPETIRLMIGMFDKDRNGTITFQEFGALWKYVTDWQQCFRGFDRDNSGSIDKNELKQALTSFGYRLSDKFYDILVKKFDRSNRGSITFDDFIQCCVALQNITNTFQQYDTQRSGWIQLQYEQFLSAGFNL 751
            DQ+FLWN+FQ+VDKDRSG I+  ELQQALSNGTW PFNP T+R +I MFD++    + F EF  +WKY+TDWQ  FR +DRDNSG IDKNELKQAL+ FGYRLSD+F+DIL++KFDR  RG I FDDFIQ C+ LQ +T+ F++YDT + GWIQ+ YEQ+LS  F++
Sbjct:   24 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 190
The following BLAST results are available for this feature:
BLAST of TCONS_00009384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDCD67.239e-7764.07Programmed cell death protein 6 OS=Homo sapiens GN... [more]
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