TCONS_00009383 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009383
Unique NameTCONS_00009383
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1141

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009383 ID=TCONS_00009383|Name=TCONS_00009383|organism=Clytia hemisphaerica|type=transcript|length=1141bp
CGCGTACCCTGTGCCCTGTGACCCGTACCCCGTGCCCTGCCctgtgaccc
gtgtttcgaactatcCGTCAAGCGAGTGAGTAAAGAAGACGCAGGTCTAT
CTTCCAATATTTCAGTTTCGGGATAATttatcctaatttgcaatagttcc
gGACTGTTTTAAAAACAACTACGGACGTGCTGGGAAACCACAGAAGGAAG
TAAATATGGCgtaccaacaacaacaacaacaacaatttgGTCAACCCATA
GATCAGAATTTTCTCTGGaatatatttcaaaaAGTTGACAAGGATAGAAG
TGGAACAATAACACATGTAGAGCTCCAACAAGCACTTTCAAATGGTACTT
GGGCACCGTTCAATCCAGAAACCATACGGTTAATGATAGGAATGTTTGAC
AAAGACAGGAATGGCACAATAACATTTCAAGAATTCGGTGCATTATGGAA
ATACGTGACCGACTGGCAGCAGTGTTTTCGTGGATTTGATCGAGACAATT
CTGGAAGTATAGATAAAAATGAGCTGAAACAAGCTTTAACCTCTTTTGGT
TACCGATTATCTGATAAATTTTACGATATACTTGTGAAGAAGTTTGATCG
TTCGAACCGTGGCAGTATTACATTTGACGATTTCATACAATGCTGTGTTG
CATTGCAAAGCATGACATCTGGCTTTATGCAACACGACACAAATCGTAAC
GGATGGATAGAGTTAACTTATGAACAATTTTTGACACTTGTTTTTACATT
GAAGAAATGAAAATCAGTTTCCAAATTAAGGGTTTTTTTGCAACCTATTG
AGGGGCTTGAAGGATATTAAACATTGGATATAATTTAAAATGATGATGAC
ATTTATAAGAGATGTTGTATGATGGATTTGATAGGGTTGGCTTCTAGATA
GGATAGTCCTGTGCCATTTCGTATTTATTATGAATGAAATGATAATAATA
TTGATTGATTATTGAGATTGAATGAGAGACTTTAATATTAAATGTTTTTA
CAAAGGTGTTACAATGTTAGCAACGACACATTGATAAGTTATACCTTCAA
AGAACCTTTGACTTCATAACTGTCTCGAATGTTTTCTGATATAAATTTCA
AGTAAAGATACAGCTGAATTTATTGGCTATTAAAAAataag
Run BLAST on NCBI

transcript from alignment at sc0000093:609757..619978+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009383 ID=TCONS_00009383|Name=TCONS_00009383|organism=Clytia hemisphaerica|type=transcript|length=10222bp|location=Sequence derived from alignment at sc0000093:609757..619978+ (Clytia hemisphaerica)
CGCGTACCCTGTGCCCTGTGACCCGTACCCCGTGCCCTGCCctgtgaccc
gtgtttcgaactatcCGTCAAGCGAGTGAGTAAAGAAGACGCAGGTCTAT
CTTCCAATATTTCAGTTTCGGGATAATttatcctaatttgcaatagttcc
gGACTGTTTTAAAAACAACTACGGACGTGCTGGGAAACCACAGAAGGAAG
TAAATATGGCgtaccaacaacaacaacaacaacaatttgGTCAACCCATA
GATCAGAATTTTCTCTGGaatatatttcaaaagtaagaggaacattaaaa
tttattttaattaatgaaatacaaataaattaCTTAGCCCAATTTGAAGT
AGCTAGCTATCTTTTAGTGTTTTTGAAGTAACTCATCCTAAACTTGATTA
CCTAAAAACTAAATACAATAATCTAGCTATCTGTCCCGCCCCCAACAATC
TAAGTTGCgttggtctaatatcaacatccctcttctaattgtGACACCCA
TCTTTAGAGCTGGGATTAATAGGAATATCGGAATCCTTGATTGAAACTTA
TTTCTTTGCTTTATAGCAGTGATTGAATAGCGTTCGGTTATCGTGGTTAC
GACGACCAGAAATAAAAAACCATTGACCCAAAACTTTCCTAAAATTTCca
gatttaaagaaataattgaCCAATATTTGATTGATCAATTTTAATCCTAT
ACTGTTTGATCAATGTTAGTCCAGTAGAATTTTCATAACATCTTTGAGGC
AAAGCTTTCTAGAATTAAGTGTTAGATTtgaccattttcaaaaaaaattg
ttttctttgctATGTaatctaccgtcaactgctctaacttgggacaattg
gtcgaaacatgggactgttgatatctggcctgtattttcacttactgtta
aatctctttgataacaaatttgttttgataactccactgTCCACCAAGTT
Tagcaatcatactttctgtcataacatgtcacaataactttcactgatag
catagcgcgccctttttaacttttctgttttcattcaaaatgactggatg
ccgattggagaattagagagcgCCCGCCCCACCCAACCGCCTAtcacccg
atgggattaacaaataacgagcgTGTAACTTGCcgtgcgagtgacgtcaa
acgctccatcgtttagCCGCTAATTTgatcttcttcgttccagacattcg
tgtgtgttccactacgaatttttttcatatttcgatttaaaagcctactc
tcagttaggaacatttggcgagtttcctatacgcggccgcaatcaaaaaa
attataacatcactcattaaaaaatgactttCGTGtctttttccactttt
tttagcctagacgatgtagcaaacattttaagtataagcacactgtgctt
ttaattggctgatttatttttttgcgttggaaaaactttttcaaactttc
agcaatgattgaccaaactgttacaatgaaaattatccagcgcatttttt
atcttcttaccttcttcattttcaatgaagcactgaaagtttactgaagg
taagcacataagatattcttataattaatgatattcattgaaacatgctt
CGTTGTGCACTGCGGTGGAGTTGCACTTGCGCGGCAACTAAGTCGCCTTC
tggttggaagatcatattgggcgttttggcgttaccatcCTCGAAGCAGC
GGGCGCCTTTGTCTTCCCGCAACTATTTCtgccattttagatggccttaa
caatagatccaaaagagcgcaataatcttggaagataatttgttttggtc
tccggctttgggatgTAGCAATGTTCTTGGTTTAGGTTAGCCTCCACCCA
TGTTTTTATTCTCactaattttaaattctttgcCTTTGTTCACCTTACTC
TTTCTTACATCACTCATTTTGAAGCCTTTCTCTCTGAaaccataaaaata
ttttaaatgtttatagCTATTTATCTAATTTATTTAACtcatttagtatt
ttttttttttttacttgaacttCTCATCACCGCCAATTTACATTTTCAGC
TTGAGGATTCAACTTAATTTCAACTCCtacatagtttgcagaggggtatg
aacccccctaggtttatttcatccccccctatatacccatcccccccttt
tgtaatgaaatcttatcccccccttctttttacagaaaatccgcTTCGAA
GGAAACTCTctttcccacctaccagcaaaattatcaacaagaaagagtat
gaagtaTTATAGTCACGAGCCAACAATGACAGAATATAACTGTGACAATT
TGTATTTGATTAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtattaaaaagg
gggggtgcaaactatgtcCTAGTTTTCAATACCGCCCTGCCTTCACATTT
TGGTATTCTCAGCACCAAGCCATTATGTTAAGCTTTGTGTCAATATTCTC
AGCCTTAAATTCTCAACTTTACTACTTATCCTCGGTTTGATATGAGCTTT
TTCTTTAggaattttatattataaattatttttgaataaagaaccaaaca
ttttattttaactcattttcattttatttttttgttaaatgtttttataa
tgTAGGGAGAACGAACATGTATGTTTTGTTACTacttaagagccagtttt
tttaagaatggggcagtttggggcagttccaatagtttgaaacttagatt
tttttcatttttggatatgttgttaagtacaatgaactgaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAATGAGTA
CCCATTGCtacttgattcttgattttgtgaaagcatcctatagatagttc
aagaatttatcagaagttggaaccttttcgtttcttttaaagattagggc
tagctcaaagtcaattttaactctaaaatcctaaaaatcttgacagaggt
gaactttaccaaccccataaaacaattttgccaTCAACCTTTCTGCCCTT
AAATACTTAGAGATAAGtccaaaagtacaaaatattccTAAACCTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCAAACAGGCTGATAGCAAA
ATTGTGTTATGGGGTTGGTAAAGTCCACCTTTAaagatttgagagtttag
aagcacattttgacagacttgatccttcaatggtagatcaggaggtaaag
atcttgatgaatgtttgtactgcccccatgaaactttccaaaaaccaaga
ttttattatctgagtgggctcattttctgttcaatcttgagcaaaaattg
ttgttttgagcaacattgtcaagatttttaggattttagagttaaaactg
actttgagctagccctcatctttaaaagaaacgaaaaggttccaacttct
gataaattcttgaactatctataggatgctttcacaaaatcaaaaatcaa
gtagcaatgggtactcattttgggcaaaaatttcagccaaaaatgtactt
taaagtcaattttacaaaattaagggggtcaggggagtttgaagccgcct
ttgagtgaaaattcagcctctataagctttcgaagagtaccatatttgat
tttcctagaaacctttCTGGAATGTGATGATGAAGcatgattttcagata
aaatttactttctaactgccaattactggctgcaatagaatgacctcagc
tctagtcaaaaaattgaaaaaaaagcctttttggtccaaaaaagcacatt
tgacaacttttttcacctagtttcattgtttttatataaaagattcatca
tagcccttacattataacaaattcagtgacctagacccctttgaagtttg
ccaatgggccaaaatatcccgaattttagtcatttttcgagcgatgttaa
gaaaatttttaaatcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGATCCTAAGAGACCA
GGCGGTTGTCTTTCAGGAACAGAAGAGTTGGaggtcagacaatgttggga
tttctaggaaaattgggctaaagttggtacttttttgagaccttgttGGC
TTTTTgggcctctaggggccagtagggccggaattttttattgcaaccac
ttcaaatggatagaccagggactaaactaccagaaaatattattttgagc
agtaagaaactcccctgggacaggtcagatggctctaaaatacccctaaa
atcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttactcagttc
attgtacttaacaacatatccaaaaatgaaaaaaatctaagtttcaaact
attggacctgccccgctcttaaaaaaactggctcttaaacatatagatag
atagattggttgtttttgatggaaaatggtaagaaacttaagtttacaaa
cacgtgtcatttagtttttgctggcttatagaatggcaggatcctggatg
gtttccctaactgactctgtgcaaaagagaaatcgtgtattttttaatac
accgttcactaactcaaatcaaatgactttggaggttcggtgaaatggtg
gccgaatttctgtcccatgttttgtcagatagtcccaaattagagcagtt
gacagtagcTTTCATTATTTAGAAATAATTGATGTCATCAAAACGAAACA
CCCAGAACTATGGTTGGGTGTTGGGTCACACCAAACACGAGCACATCACT
AAAAATAACAGAGATCATGCCTAATCAAACATATTCAAATAGGGTCAATC
AATTGAATCAAGTGATTTGGCGTTTGAACGATTCGATTGACCCTCTGGAA
TTATGTGATTTTCCATAGTGgatatgaaattttattttgagaacTGATAA
CTCAAAAActactgaaccaaatttaaaaataacagcttaaaatttaagtt
agagcTTCCTCTTTCTTATGacatttaaaattcaattttatatcTTGTCC
CATTCTCCTTAGTGGAATTCTCCGGGAGTAACTTTCTTAGATTACTCTTG
AATTATTAAATTTTCTACACTATTGATTCAAAGCAACCTGGTAGAAGAAA
GAAATGTAAGCTATCTGAAGACATCAAGAAGCAATTTGTACAGGGATTAA
AATGTGCGTGATAGTTTTTAAGAAGAAAGACGCAGAACGCAAACAGAAAA
AAGGGCCATATTAAAATGTCATCAATCAATGAGAAAGAAGTTGATGAAAT
GAGATTAAAGAAAAGTCACTGGAAGGAGAGAAGAAGAGAAGAAAAGGAAA
AGTTAACAGATTGCCCTCCTCTCAGTCAGGAAGAGTGGAACCAGTAAGAA
AAGAGTAGTCTTGAACAGAGCGAAGCAGAAGCAGAAGTGTACCAGTCAGC
TAAGAcctatttttctttcctttattcGTTTGGGAGAATGCGACGGtgtt
ttgaataactaattactccagcagaattttttttaatgataacgtcatta
attgatttgtcttttacaacacaTCTGTTACCTAGGTACAAGATAATGTA
TCCCGTTTAtactagcctggagatccatgctatcatttcttattctatat
actgatggcgaaatatatagcatgatatgggctgagagtttgaatttccc
agatcctaataacgattgaaaacatagccaatcaaattttgttattcttt
tactggtcacactttcttagagaaagcgcaagttccgaaatttggttttt
attttagtaagtgaggacagcgctaaattcgaatttccaactgtaaattt
tttgaggcagaaatctgcctcacatgtcatacccgtcctgtatacatcag
gGTCTCCTGTCTACGTTTATACTggctggagtaatttgttattcaataga
ccttCTCGTTCTCCCAAACGACTATCTATTTATCTTTTAGTTATTCAAAG
TTTAGcttttcttttatcttttataTATCCAAAATGAGGGTTTGTAATTA
AAATTATACATAAGGATTTTAATGATACCTTTATTAACCAGAATGggctt
tccagaaaaaaatttaatatgggggtggaggatataacattttttggaaa
tttacccctggacaaattctgacacccttcccCCCGGAGCAAGTTTGCCC
CCCAAAATAATACAAATTTTTCGGATTAATCACTACCCCCAAACGAAATA
TCCAATATATTCTCCACCCCAAATGTACAAAAACTTTCTGGAAGAGCCAA
GTAAGATCAGAGTCATAAGAAGAAGTATATTTGTTTTTGTAACTAATAAT
GCGTTTTCTTTTATGATTTGTAGAGTTGACAAGGATAGAAGTGGAACAAT
AACACATGTAGAGCTCCAACAAGCACTTTCAAATGGTATGTATAGTTCTA
AAAATTATGTTGTTTgatggttgtttttttttaacttttaaatgaaaaat
tttgagcaAGCTATATACTTTAATTTTCTTAATCAAATATTATATAGGTT
TTTATAATCGTTTTAGGTACTTGGGCACCGTTCAATCCAGAAACCATACG
GTTAATGATAGGTATACTAATATTTTGTACATGTCCAGTCTGTTCTATGT
TCTAGCCTATGCTAGACGTCATctgcgttttttctacgcaattaacgtct
agtATAGCCTAGAACGGACTAGACAAAGACAGAGCGGAAAAAGATAACCT
TAAACTTGTTCATCTTCTCTTTCGATTTTTGTAACCCCACCAGGGTAATT
gatgtctttttttctatttgagaTACGGTTTTGGCTGTATATTTTTCACT
CGAAAGATTTCTTGTCTCATAGATGGAATTACTTAACATTCTATCTCATT
TTCTGATAAAATTTGCGATTACTACCCCTAACATTTATACCATGTATTTA
TATGTTAATTGGGTCAAGGGTTAACTTTGTTACAGATATGATACAGATAC
GAGATGTAAAGTATTACCCCAAAGTTACTATATTAATGAATATTTATGTC
TGATAAGAAGAGACGGATTGCTTTCAAACTCACTGACCACTTTGTTAATT
CTTAATTGGGTTTCCCACCTGTTCTGTGGCACAGGTATAAATCAGTTTTA
TTGTGTTTGTTTATAAAGGAATGTTTGACAAAGACAGGAATGGCACAATA
ACATTTCAAGAATTCGGTGCATTATGGAAATACGTGACCGACTGGCAGCA
GTGTTTTCGTGGATTTGATCGAGACAATTCTGGAAGTATAGATAAAAATG
AGCTGAAACAAGCTTTAACCTCTTTTGGTTAGTGTTGtgaaattatgttt
ttttttttaaatatttctcaaGCTATTTATCTAGAGTCAAACCGTGTGAT
TGATTCATAAATTTCTAATGTCCTTGTCATTGCTTGCAAAATTCCTAAAA
GTTGGTTCTAAATTTCCCTccttcttttaaaatatttttagtacACATTT
CTGAATTAAATCACATTCATGAATGTTCCATTGAATGAAGtagaattttt
agaatttttagaatttttttgcaaaatgataaCCCAAACTAAAATGACGA
TTCTAGTGCTACTGCAAGtggtttgaaatgaaataaTCTAAAACTTTGCG
AATTATATCTTTTgcattttaaatcttttttttaccgtCAGGTTACCGAT
TATCTGATAAATTTTACGATATACTTGTGAAGAAGTTTGATCGTTCGAAC
CGTGGCAGTATTACATTTGACGATTTCATACAATGCTGTGTTGCATTGCA
AGTAAGTAACAATTAATATCTTATACAGTGTGTCCTATATAAAGCAGTCG
TGTTCAAACTATAGATATAATTTCAATGAAATTCATACTAAAATAATCAG
CTTGAaacccgggggtactaggttttGGAGGTGATGGGTATGTCCGTTCC
GAAAATCCGTCTACACAGGGACCCTTATTtctcgcacatacccgacaccc
cCTCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcccccccccccccccttgaacCCCTTGAAAAGGCAAAATATGACtaat
taaaaagttttctttgtatACTTGTTAATGCTAACATGACAACTATATCG
TATTCCCGAAAATGGGCGCCGCGGCACTCTTAGACAGTTTGAGAcaccta
aaatttttgaaatatctattTTCAAGGGCCTCTGGGGTCAAGTAAAGATG
TTTTTTGccatagttttttttttcatttttccttatttcctcattttgaa
cagttttgagctcaaaaaaatcgaatgtttatttaaagaaaattataagG
AAATTTTGTATTGGAATgtcaaactaaagaaaaattttcacttactgCGC
CTTAAAAACACTATAAAACGCTTTTTAATTGGATAagactttttaattta
atttgatttcCTCTGCAAATAAACAGACAGGATCATGCCCCCTGGCTTCC
CCGTTGACAGGGCCTATTGTAGCTTGCTCATGGCGTTGATGGCGTTTTTA
GCTgaggaaattttattttatttacttaTCTCTCATCAGAGCATGACATC
TGGCTTTATGCAACACGACACAAATCGTAACGGATGGATAGAGTTAACTT
ATGAACAATTTTTGACACTTGTTTTTACATTGAAGAAATGAAAATCAGTT
TCCAAATTAAGGGTTTTTTTGCAACCTATTGAGGGGCTTGAAGGATATTA
AACATTGGATATAATTTAAAATGATGATGACATTTATAAGAGATGTTGTA
TGATGGATTTGATAGGGTTGGCTTCTAGATAGGATAGTCCTGTGCCATTT
CGTATTTATTATGAATGAAATGATAATAATATTGATTGATTATTGAGATT
GAATGAGAGACTTTAATATTAAATGTTTTTACAAAGGTGTTACAATGTTA
GCAACGACACATTGATAAGTTATACCTTCAAAGAACCTTTGACTTCATAA
CTGTCTCGAATGTTTTCTGATATAAATTTCAAGTAAAGATACAGCTGAAT
TTATTGGCTATTAAAAAataag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005253XLOC_005253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009383-exon-sc0000093-1491911889:609757..610038TCONS_00009383-exon-sc0000093-1491911889:609757..610038Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1510915933:609757..610038TCONS_00009383-exon-sc0000093-1510915933:609757..610038Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1575043694:609757..610038TCONS_00009383-exon-sc0000093-1575043694:609757..610038Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1491911889:617230..617291TCONS_00009383-exon-sc0000093-1491911889:617230..617291Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1510915933:617230..617291TCONS_00009383-exon-sc0000093-1510915933:617230..617291Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1575043694:617230..617291TCONS_00009383-exon-sc0000093-1575043694:617230..617291Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1491911889:617423..617467TCONS_00009383-exon-sc0000093-1491911889:617423..617467Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1510915933:617423..617467TCONS_00009383-exon-sc0000093-1510915933:617423..617467Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1575043694:617423..617467TCONS_00009383-exon-sc0000093-1575043694:617423..617467Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1491911889:618025..618183TCONS_00009383-exon-sc0000093-1491911889:618025..618183Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1510915933:618025..618183TCONS_00009383-exon-sc0000093-1510915933:618025..618183Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1575043694:618025..618183TCONS_00009383-exon-sc0000093-1575043694:618025..618183Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1491911889:618548..618657TCONS_00009383-exon-sc0000093-1491911889:618548..618657Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1510915933:618548..618657TCONS_00009383-exon-sc0000093-1510915933:618548..618657Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1575043694:618548..618657TCONS_00009383-exon-sc0000093-1575043694:618548..618657Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1491911889:619496..619978TCONS_00009383-exon-sc0000093-1491911889:619496..619978Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1510915933:619496..619978TCONS_00009383-exon-sc0000093-1510915933:619496..619978Clytia hemisphaericaexon
TCONS_00009383-exon-sc0000093-1575043694:619496..619978TCONS_00009383-exon-sc0000093-1575043694:619496..619978Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:609757..619978 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.5663	39.1411	38.2185	33.306	30.9266	22.1347	48.1502	43.1523	38.2155	37.6833	26.908	30.1658	16.2701	12.6077	12.3087	13.6752	20.3625	22.2048	11.9422	14.7205	25.063	26.2874	19.7513	18.1463	18.174	25.4559	28.6524	21.9386	14.0725	13.8005
Blast
[Close]
BLAST of TCONS_00009383 vs. Swiss-Prot (Human)
Match: PDCD6 (Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 8.011e-74
Identity = 102/159 (64.15%), Postives = 129/159 (81.13%), Query Frame = 2 
Query:  251 DQNFLWNIFQKVDKDRSGTITHVELQQALSNGTWAPFNPETIRLMIGMFDKDRNGTITFQEFGALWKYVTDWQQCFRGFDRDNSGSIDKNELKQALTSFGYRLSDKFYDILVKKFDRSNRGSITFDDFIQCCVALQSMTSGFMQHDTNRNGWIELTYEQ 727
            DQ+FLWN+FQ+VDKDRSG I+  ELQQALSNGTW PFNP T+R +I MFD++    + F EF  +WKY+TDWQ  FR +DRDNSG IDKNELKQAL+ FGYRLSD+F+DIL++KFDR  RG I FDDFIQ C+ LQ +T  F ++DT+++GWI+++YEQ
Sbjct:   24 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 182
The following BLAST results are available for this feature:
BLAST of TCONS_00009383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDCD68.011e-7464.15Programmed cell death protein 6 OS=Homo sapiens GN... [more]
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