|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009377 ID=TCONS_00009377|Name=TCONS_00009377|organism=Clytia hemisphaerica|type=transcript|length=2993bp
CTTCTTTTATGTTTCcttcttttgattgtttttgtaGGTCTTTTTTCAAA
CCCATCCGCACGTCCAATATATCCTTTGTGGAGCGAATGTCTATTCAGGA
AGCCTCTAGGGAGTCAAAAAttactctacggtggagagagagCCTTATGT
TCTTTGGTTGACAATGCCGCTCCAATGAATGAGCTTCAATAAACTATTTT
TATTGTTTAGAATTcttttgttatcattttttttgttCTACCGCGCGTTT
TTGTTCCAGATTTGTAATGAATGAAAAAACCACCTTCAAAGATCACAGCG
GATTTTTTTCTTTGGTGTGTTATGTGGTGCGAAGTCAAAATTTGTTATAG
AGTTATCTTTTTGAGAGGGTGATAGTTTgagtaaaaaatgaaattttgga
cGTGAGCTGATCTGATTTTCTATATTTATTCTTAGACTGCGTTTGAAAGT
TTACACAGATGAAGCATTTCTTCTAATAGTTTAATTTACAGATCGAATTA
AAATCTATGCTCAAAATTGCTTTTTTGAGTGCGTGTAGTTACTTTTGAGC
ATGAAtgaatctttcttttttactaCGAAGTGAAATGCAATAACAACTTT
CTCACGTGTTCAATACGCTGTGTGGTGAATTTTGTGGAGAGATTTTCAGT
GTGTTTTGGTAGAGGTAGTTTAATTTCATGCATATTTAATGACTCTTCTA
GGTGTTTTTCTTCGATAGTTAATTGCttcataatttatttttattgcgca
atattttcttttgcttattttcaaatgatacttttcgaatgtttttgttt
ttattgcgTAACAGATGCGAGTTGTAAAGTTTTGCGTCTCAAGGGACCCT
TTGTGAAGCACTTCATAACCTTCATtcgatttattttagcgaaaaaatCA
GATTGGTCGCATATCAAGATTAAAACAGACAGATGGCGCGTGTGTATGGG
AAAGATTTTGGTgtgtaaagaaagaaaatatataaagtGGTGAGATTATA
TATTCGAACGATCGAATTCTTTGTTGTctttatttataaatcataacaaa
agagaagaaaaaagtgTTCGATTTTGTTGGCGTCAATTTTGTTTCATTGA
ttcttttttttgagaaatcacGCGAGGgaaaggaatttttttcaacattc
gaAGGAAGGATAAAGTTATTGATAGAGTTGCGAGGACCTTTCTAATGCAA
TGGTACTGGAAAGGACTTTAATATTTTTTGGCTCAATGATATCAGTATCA
TGTTTAACATTTGCAGTATGCAGTCAATTTTGGGCTGAATTTTATTTCGA
TGGGAAAAGATATCATACTGGTTTGTGGAGAGTTTGTTATGAAAAAGCAG
ACGAATGCGACTCATTTAACACGTGGTTAGACGAAGGCGAAAAAATTCCG
AGTTGGCTATCCGAAATACGTATATTAATTTGTTTGGCTTCTATATTAGC
AGGAATTGCTTTACTAACATCTTTACTTGgcattttatatttgaaaataa
aatctgttTACACATCTGTAATCAACTTTATATCTTGCGCGCTTCTTGTT
GgagtttgtttaattttttacgaaagtaaatattttcataatgaaCGACA
GTTGTTACGAGTCAGACATCTATGGGCTTTTTACTTAACCATCAGTACGG
CCGGTTGGACTTTTTTGATGGCAGTTTTTGGGATTATGGCGGACtattgc
tgttgttgttgtaaaAAAGACAGGACTTTGGAAGTAAATTATGGTGATAT
GGATATATACGATCCCGAGCATGTATGATATTTAAAATCTTGCTGTAAAT
AtttcacatactttattatgaCTAAAAACCAtaaatattatattttcttC
CTGCTATGAAAAATCTCTGAAAAGCTCATCCACCCGTACTCCTTTTACTT
GGCATTTCAATGTGCTTTTTTTCGttagaatttttttccttttctatttt
gctttttgcttttttagttttttttgttgttaagTTTAGCttctgtttga
ttttttaaggtgAAAAATCTgtcTTTCATCAGTGGGGATTGAGATGAAAG
CTGTTAGTAGCTGGAATGAAGTGGGCACCCCTATAGAATTACGCGtggat
tgattttttttgcgaACTTATGCTACTTATTGCTAAAATTATTCCCTTAA
AAATTACAGTGAGTTCGAATTTTAAGCCAACAGTAGTTCGGGCTAGTTCT
CCTCAACACTTTTTTAACCATGAAAACTTTATGCGGGAGAGTTTAGTACC
TATAGTATCGCCTCGTCAATATAGTTTTAGTTTATTATGTgcattggaaa
ttttttttataaatataattcaGAGATTGAGACGTAAAACAAATCAGCTT
TTCGTTTTCCCAAGAACACTCACAGCCAGACTGCTTCAACGAACCTTGAA
ATTCTCAGTTTTCCCACCTTTGGACAACTTTTTGTGAGAGCTGTGGCAAA
TATTTCTCACAAGGTGTTCTTCATTCAATGTTGACTTAGCTGCCATTCtt
gccacccttagagagacctccacaaaatttcagccagaatTTTAGTCCAA
ATTACAAGAATTTATCACCCTTTGAGGGAGTCGATTTataattttcgtaa
ttttgcGGGTAATTTTtgggacccttacagagactcaatttctttttaat
gatttttgtacccctttgagggacttccgagggtgtgaaaaaggacCCTT
GTTGCTCgtacatacccggcacccaaaCTCCAGAAATTAAGAGCACGCGA
AAGCTCCAaatattttggatattcttatatttTCAATGAGGGTAGATAGA
AGGGTCAAAATATAGCATACGCCAATACTAGGAGCATACTATAGAAGATT
TTGATATTATGAATTAAACAGTTTGGCTGTCGAGAGAAGTCCTCAccttt
ttttgtaaattattgTAAAAGCTTCATTAATATATTTCTTATGCTATTTT
ATGAAGATCCCTTTTTCTTACATTATacgaaacaaatttaaaa Run BLAST on NCBI protein sequence of TCONS_00009377-protein >TCONS_00009377-protein ID=TCONS_00009377-protein|Name=TCONS_00009377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MVLERTLIFFGSMISVSCLTFAVCSQFWAEFYFDGKRYHTGLWRVCYEKA
DECDSFNTWLDEGEKIPSWLSEIRILICLASILAGIALLTSLLGILYLKI
KSVYTSVINFISCALLVGVCLIFYESKYFHNERQLLRVRHLWAFYLTIST
AGWTFLMAVFGIMADYCCCCCKKDRTLEVNYGDMDIYDPEHV Run BLAST on NCBI transcript from alignment at sc0000093:514465..517809+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009377 ID=TCONS_00009377|Name=TCONS_00009377|organism=Clytia hemisphaerica|type=transcript|length=3345bp|location=Sequence derived from alignment at sc0000093:514465..517809+ (Clytia hemisphaerica)
CTTCTTTTATGTTTCcttcttttgattgtttttgtaGGTCTTTTTTCAAA
CCCATCCGCACGTCCAATATATCCTTTGTGGAGCGAATGTCTATTCAGGA
AGCCTCTAGGGAGTCAAAAAttactctacggtggagagagagCCTTATGT
TCTTTGGTTGACAATGCCGCTCCAATGAATGAGCTTCAATAAACTATTTT
TATTGTTTAGAATTcttttgttatcattttttttgttCTACCGCGCGTTT
TTGTTCCAGATTTGTAATGAATGAAAAAACCACCTTCAAAGATCACAGCG
GATTTTTTTCTTTGGTGTGTTATGTGGTGCGAAGTCAAAATTTGTTATAG
AGTTATCTTTTTGAGAGGGTGATAGTTTgagtaaaaaatgaaattttgga
cGTGAGCTGATCTGATTTTCTATATTTATTCTTAGACTGCGTTTGAAAGT
TTACACAGATGAAGCATTTCTTCTAATAGTTTAATTTACAGATCGAATTA
AAATCTATGCTCAAAATTGCTTTTTTGAGTGCGTGTAGTTACTTTTGAGC
ATGAAtgaatctttcttttttactaCGAAGTGAAATGCAATAACAACTTT
CTCACGTGTTCAATACGCTGTGTGGTGAATTTTGTGGAGAGATTTTCAGT
GTGTTTTGGTAGAGGTAGTTTAATTTCATGCATATTTAATGACTCTTCTA
GGTGTTTTTCTTCGATAGTTAATTGCttcataatttatttttattgcgca
atattttcttttgcttattttcaaatgatacttttcgaatgtttttgttt
ttattgcgTAACAGATGCGAGTTGTAAAGTTTTGCGTCTCAAGGGACCCT
TTGTGAAGCACTTCATAACCTTCATtcgatttattttagcgaaaaaatCA
GATTGGTCGCATATCAAGATTAAAACAGACAGATGGCGCGTGTGTATGGG
AAAGATTTTGGTgtgtaaagaaagaaaatatataaagtGGTGAGATTATA
TATTCGAACGATCGAATTCTTTGTTGTctttatttataaatcataacaaa
agagaagaaaaaagtgTTCGATTTTGTTGGCGTCAATTTTGTTTCATTGA
ttcttttttttgagaaatcacGCGAGGgaaaggaatttttttcaacattc
gaAGGAAGGATAAAGTTATTGATAGAGTTGCGAGGACCTTTCTAATGCAA
TGGTACTGGAAAGGACTTTAATATTTTTTGGCTCAATGATATCAGTATCA
TGTTTAACATTTGCAGTATGCAGTCAATTTTGGGCTGAATTTTATTTCGA
TGGGAAAAGATATCATACTGGTTTGTGGAGAGTTTGTTATGAAAAAGCAG
ACGAATGCGACTCATTTAACACGTGGTTAGACGAAGGCGAAAAAATTCCG
AGTTGGCTATCCGAAATACGTATATTAATTTGTTTGGCTTCTATATTAGC
AGGAATTGCTTTACTAACATCTTTACTTGgcattttatatttgaaaataa
aatctgttTACACATCTGTAATCAACTTTATATCTTGCGCGCTTCTTGTT
GgagtttgtttaattttttacgaaagtaaatattttcataatgaaCGACA
GTTGTTACGAGTCAGACATCTATGGGCTTTTTACTTAACCATCAGTACGG
CCGGTTGGACTTTTTTGATGGCAGTTTTTGGGATTATGGCGGACtattgc
tgttgttgttgtaaaAAAGACAGGACTTTGGAAGTAAATTATGGTGATAT
GGATATATACGATCCCGAGCATGTATGATATTTAAAATCTTGCTGTAAAT
AtttcacatactttattatgaCTAAAAACCAtaaatattatattttcttC
CTGCTATGAAAAATCTCTGAAAAGCTCATCCACCCGTACTCCTTTTACTT
GGCATTTCAATGTGCTTTTTTTCGttagaatttttttccttttctatttt
gctttttgcttttttagttttttttgttgttaagTTTAGCttctgtttga
ttttttaaggtgAAAAATCTGTCTTTCATAGCCGGAGTGAAGTGGGCACC
CCTATAAAATCACGCGtggattgattttttttgcgaACTTATGCTACTTA
TTGCTAAAATTATTCCTTTGAAATTACAGTGAGTTCGAATTTTAAGCCAA
CAGTAGTTCGGGCTAGTTCTCTTCAACACTTTTTTAAccatgaaaatttc
cagggccGGNTCCTGCTATGAAAAATCTCTGAAAAGCTCATCCACCCGTA
CTCCTTTTACTTGGCATTTCAATGTGCTTTTTTCGttagaatttttttcc
ttttctattttgctttttgcttttttagtttttttttctttgttaagttt
agcttctgtttgattttttaaggtcTTTCATCAGTGGGGATTGAGATGAA
AGCTGTTAGTAGCTGGAATGAAGTGGGCACCCCTATAGAATTACGCGtgg
attgattttttttgcgaACTTATGCTACTTATTGCTAAAATTATTCCCTT
AAAAATTACAGTGAGTTCGAATTTTAAGCCAACAGTAGTTCGGGCTAGTT
CTCCTCAACACTTTTTTAACCATGAAAACTTTATGCGGGAGAGTTTAGTA
CCTATAGTATCGCCTCGTCAATATAGTTTTAGTTTATTATGTgcattgga
aattttttttataaatataattcaGAGATTGAGACGTAAAACAAATCAGC
TTTTCGTTTTCCCAAGAACACTCACAGCCAGACTGCTTCAACGAACCTTG
AAATTCTCAGTTTTCCCACCTTTGGACAACTTTTTGTGAGAGCTGTGGCA
AATATTTCTCACAAGGTGTTCTTCATTCAATGTTGACTTAGCTGCCATTC
ttgccacccttagagagacctccacaaaatttcagccagaatTTTAGTCC
AAATTACAAGAATTTATCACCCTTTGAGGGAGTCGATTTataattttcgt
aattttgcGGGTAATTTTtgggacccttacagagactcaatttcttttta
atgatttttgtacccctttgagggacttccgagggtgtgaaaaaggacCC
TTGTTGCTCgtacatacccggcacccaaaCTCCAGAAATTAAGAGCACGC
GAAAGCTCCAaatattttggatattcttatatttTCAATGAGGGTAGATA
GAAGGGTCAAAATATAGCATACGCCAATACTAGGAGCATACTATAGAAGA
TTTTGATATTATGAATTAAACAGTTTGGCTGTCGAGAGAAGTCCTCAcct
ttttttgtaaattattgTAAAAGCTTCATTAATATATTTCTTATGCTATT
TTATGAAGATCCCTTTTTCTTACATTATacgaaacaaatttaaaa Coding sequence (CDS) from alignment at sc0000093:514465..517809+ >TCONS_00009377 ID=TCONS_00009377|Name=TCONS_00009377|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at sc0000093:514465..517809+ (Clytia hemisphaerica)
ATGGTACTGGAAAGGACTTTAATATTTTTTGGCTCAATGATATCAGTATC
ATGTTTAACATTTGCAGTATGCAGTCAATTTTGGGCTGAATTTTATTTCG
ATGGGAAAAGATATCATACTGGTTTGTGGAGAGTTTGTTATGAAAAAGCA
GACGAATGCGACTCATTTAACACGTGGTTAGACGAAGGCGAAAAAATTCC
GAGTTGGCTATCCGAAATACGTATATTAATTTGTTTGGCTTCTATATTAG
CAGGAATTGCTTTACTAACATCTTTACTTGgcattttatatttgaaaata
aaatctgttTACACATCTGTAATCAACTTTATATCTTGCGCGCTTCTTGT
TGgagtttgtttaattttttacgaaagtaaatattttcataatgaaCGAC
AGTTGTTACGAGTCAGACATCTATGGGCTTTTTACTTAACCATCAGTACG
GCCGGTTGGACTTTTTTGATGGCAGTTTTTGGGATTATGGCGGACtattg
ctgttgttgttgtaaaAAAGACAGGACTTTGGAAGTAAATTATGGTGATA
TGGATATATACGATCCCGAGCATGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009377-exon-sc0000093-1491911889:514465..516484 | TCONS_00009377-exon-sc0000093-1491911889:514465..516484 | Clytia hemisphaerica | exon |
| TCONS_00009377-exon-sc0000093-1510915933:514465..516484 | TCONS_00009377-exon-sc0000093-1510915933:514465..516484 | Clytia hemisphaerica | exon |
| TCONS_00009377-exon-sc0000093-1575043694:514465..516484 | TCONS_00009377-exon-sc0000093-1575043694:514465..516484 | Clytia hemisphaerica | exon |
| TCONS_00009377-exon-sc0000093-1491911889:516837..517809 | TCONS_00009377-exon-sc0000093-1491911889:516837..517809 | Clytia hemisphaerica | exon |
| TCONS_00009377-exon-sc0000093-1510915933:516837..517809 | TCONS_00009377-exon-sc0000093-1510915933:516837..517809 | Clytia hemisphaerica | exon |
| TCONS_00009377-exon-sc0000093-1575043694:516837..517809 | TCONS_00009377-exon-sc0000093-1575043694:516837..517809 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000093 | supercontig | sc0000093:514465..517809 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
