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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009367 ID=TCONS_00009367|Name=TCONS_00009367|organism=Clytia hemisphaerica|type=transcript|length=2329bp
GTAGTTATAAAAATAGCGCCAAGAAGCTTTAATATAAACAGTGCACAACA
TTGAGTGTATAAACGATATCTGAAGACTTGGGAAATATTGGTCCAGAATG
ATTGGAACGATTTTGTTAGCAATACCTGGGTTTGTTTTATTATGGGTTTT
AATTACTTATGTGGAACATTTGATCAGTTTGAGGAAATATCCAAAAGGAC
CATTTCCTTTACCTTTGATCGGAAACATTTTGTTGTTGAGCAAAAAACCT
TTTCTCGACTTCGATGAAATGAGCAAAACGTATGGTGATGTGTTCAGTAT
AAGCTTTGGGATGAACCGGGTGGTTATTTTGAATTCGTATGAAGGAATCA
AGGAAGCCCTGATGACACGTGGAACTGACTTCGCAGGTCGACCCACTGAT
AGCATCCCTGCCAAGATTGCCAGCAGAAATTTCACCAGCCTTGGACATGG
TGATTATTCCAAAAGTTGGGCATTTTTGAGGAAACTTTCTTACAAGGGGT
TGCATGTTTATGGTACAGGAATGAAAAAAATCGAAGATATTATTACAGAG
GAAGTTGACAAAATGTGCTCCATATTGTCTCAAGAAAATGGCCAGCCAAC
TTTGATCACGTCCTTTATAGGCAATTCTTTGGTCAACACCATTTGTCATC
TTTGCTTCAACAAGACATACCATGCTGACGACCCAGAATTCAAACACATT
ATGAGTTTCAGCAAACTAATCGATGTGGGACTCAGTCCTGGACAAGCCAT
CGTCATATTTCCTTGGCTTCGATTCTTTCCAGATACAGAAAAATTCAAGA
ATTTGAAACTGGGCACCAAACAAAGAGACGATTTCACAAATAAGATGTTC
AACGAGCACATTGAATCATTCAATCCGGAGAATATCAGAGATCTAACCGA
TAATCTTTTACATCTTTCGTTAGATAAAGAAATGTGGAAAGATGCTGGAT
TCGAAGAAGTCACTCAATCCCAGTTAGAATCTGTGGTCAACTCAATCTTC
TTTGCAGGGACTTTAACACAACTAGCCACATTTCAATGGTTCGTAGTATT
TATCGTACAAAATCCTGCGTATCAAACTAAAATGTACCAAGAAATTGTAA
ACAAATTTGGCCAAAAGCACCAAATTACCGCCGAAGATAAAGAAAATCTA
CCTTACAGTGAGGCTGTTTTAAAAGAAACCAACAGATTAGGTTCAATTGC
ACCTCTTGCCATACCACACAAAACGACCGTTGACACATCAATTGGAGGTC
ATCCAATCTCTAAGGGTACTAAAATTCTTCTCAACCTGTACAGCATGCAT
CACGACCCTGCACACTGGGATGAACCAGAGAAATTCAAACCAGAACGTTG
GTTGAATGCTGATGGAAGTTTGAAGAAAGAAAAGCCCTCACATTATTTTC
CATTTGGTGCGGGAACTCGTGTTTGCCTTGGGGATAGAATGGcgaaaata
caaatttttttgatcgTCACAAGGTTATTGGTCAACTTTGAAGTCTCTCT
TGCTCCTGGAGAATCAATGCCCGGTTTGAAAGATGGAATTATGGGATTGA
CATATTCTCCTGCAAGCAAATTCAAAATAGTTTTGACACCTAGGGATGGG
AAGAAGGTCAATTGAGGAAATTGGATGATTACAAAACTTTCAATATTTAT
AAATGAACTTTACAATGAGTAAATTACGTACCAGAAAAGATTTTCCATAA
CTATATACAACTCGTCATAGCTGAAATGGGAGGAGAATGAAGGCCATTAT
GCAAAAAGATGAGAGTAATGTCGTTGTTTGACGACGACTATTACAGTGTT
TGCCTTGGAGAGCGAATGACCAAAATGCAATTATTCATGATGGTGACCAA
TTTCTTTCGCAACTTTGAAGATTCATTGGGTCCGGGAGAAAAGTTACCGG
CTGCTAGACGGAATTTTTGGAATAACATTAAACCCACCTGTTTTTACGAC
AGTGCTTAAGAGAAGAATACAAGGGAACTAACGCTTTATTGTGTAATATT
TACCGTATATATTGATTAATCATAGCTTGAAATCGAGGCAAAcaaatttc
tactttttcctAAGCGCTTTATGCACTTAAAAGACTTTACGATATAGCGC
TGTTGATTTACCAagatcaatagaccttttcataaattacgtcacggaca
tcacttgcctcgttttgaaattattgccatggtgattaactcccagcgga
ttttattaaaactactttctattcataaaaaaaggatttcgtgtctcaag
ggacataatcaccatggtaattgtttgaatacgaggcaagtgatgttcgt
gaattaatttatgaaaagctcTATGGCAc Run BLAST on NCBI transcript from alignment at sc0000093:467330..470505+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009367 ID=TCONS_00009367|Name=TCONS_00009367|organism=Clytia hemisphaerica|type=transcript|length=3176bp|location=Sequence derived from alignment at sc0000093:467330..470505+ (Clytia hemisphaerica)
GTAGTTATAAAAATAGCGCCAAGAAGCTTTAATATAAACAGTGCACAACA
TTGAGTGTATAAACGATATCTGAAGACTTGGGAAATATTGGTCCAGAATG
ATTGGAACGATTTTGTTAGCAATACCTGGGTTTGTTTTATTATGGGTTTT
AATTACTTATGTGGAACATTTGATCAGTTTGAGGAAATATCCAAAAGGAC
CATTTCCTTTACCTTTGATCGGAAACATTTTGTTGTTGAGCAAAAAACCT
TTTCTCGACTTCGATGAAATGAGCAAAACGTATGGTGATGTGTTCAGTAT
AAGCTTTGGTAAGATAGAGGATGATTTCAAATACAGTTCAAATAACATGA
AGAGAACCTTTTGATCATATTTGTGATCAGTTGGTCACAGCTCCTTTCTC
TCTTTACATCACTAATGTCCTCTTCAGCCCAACTCACAAATGGTGGTCTT
TTTTTGCTAAAACAGGAAAAGTCAACCCAAAATCTTCAGGGTTTCGGACC
AAAATAGACCTTATcatagtttttgatttttctaaaaaagcgatgcatta
tgggattgtttcgggggcattacaatagaattccctcgagaaATTCCTAA
GAGACTTCTAATGTATTatccccgaaacaatcccacaatgcatcgtttat
ttagaaaaatcaaaaactccgataggATCTATTCGAGAAAATCCAACAAA
GGAAATCTTTGCAACTTTAGAAGTTCTTTAAATAAAAGCTGAATAAAATC
TTTCATACAGGAACTTTTcactctttttttctatttgttaGGGATGAACC
GGGTGGTTATTTTGAATTCGTATGAAGGAATCAAGGAAGCCCTGATGACA
CGTGGAACTGACTTCGCAGGTCGACCCACTGATAGCATCCCTGCCAAGAT
TGCCAGCAGAAATTTCACCAGCCTTGGACATGGTGATTATTCCAAAAGTT
GGGCATTTTTGAGGAAACTTTCTTACAAGGGGTTGCATGTTTATGGTACA
GGAATGAAAAAAATCGAAGATATTATTACAGAGGAAGTTGACAAAATGTG
CTCCATATTGTCTCAAGAAAATGGCCAGCCAACTTTGATCACGTCCTTTA
TAGGTAAGTTCGAAGAAAATAGCCTTCTTGAAAATTTGTTCCATGATGCA
TTTTTTCATGCGGAAACTTAAAATGCGAAAGGAAGATTTTGGAATACcct
attggaactaattttcacgggaattaattttagcgttttattTGAACCCg
cgaaataaaaaattttccaattttaccgaaaaatttgaaaaatccaaggg
aaaataaaagaaatttgtccaaaaaagagcaaaaccgcgaaaacttAAAC
ctgcgaaatgcaatttttccgatttttttttcgaccgcgaatattagtcc
ccgcgaaaattagttccaataaggtaataaATTAGTGATTATTGACAGTT
CTTTGAACTTTTACTAGGCAATTCTTTGGTCAACACCATTTGTCATCTTT
GCTTCAACAAGACATACCATGCTGACGACCCAGAATTCAAACACATTATG
AGTTTCAGCAAACTAATCGATGTGGGACTCAGTCCTGGACAAGCCATCGT
CATATTTCCTTGGCTTCGATTCTTTCCAGATACAGAAAAATTCAAGAATT
TGAAACTGGGCACCAAACAAAGAGACGATTTCACAAATAAGATGTTCAAC
GAGCACATTGAATCATTCAATCCGGAGAATATCAGAGATCTAACCGATAA
TCTTTTACATCTTTCGTTAGATAAAGAAATGTGGAAAGATGCTGGATTCG
AAGAAGTCACTCAATCCCAGTTAGAATCTGTGGTCAACTCAATCTTCTTT
GCAGGGACTTTAACACAACTAGCCACATTTCAATGGTTCGTAGTATTTAT
CGTACAAAATCCTGCGTATCAAACTAAAATGTACCAAGAAATTGTAAACA
AATTTGGCCAAAAGCACCAAATTACCGCCGAAGATAAAGAAAATCTACCT
TACAGTGAGGCTGTTTTAAAAGAAACCAACAGATTAGGTTCAATTGCACC
TCTTGCCATACCACACAAAACGACCGTTGACACATCAATTGGAGGTCATC
CAATCTCTAAGGGTACTAAAATTCTTCTCAACCTGTACAGCATGCATCAC
GACCCTGCACACTGGGATGAACCAGAGAAATTCAAACCAGAACGTTGGTT
GAATGCTGATGGAAGTTTGAAGAAAGAAAAGCCCTCACATTATTTTCCAT
TTGGTGCGGGAACTCGTGTTTGCCTTGGGGATAGAATGGcgaaaatacaa
atttttttgatcgTCACAAGGTTATTGGTCAACTTTGAAGTCTCTCTTGC
TCCTGGAGAATCAATGCCCGGTTTGAAAGATGGAATTATGGGATTGACAT
ATTCTCCTGCAAGCAAATTCAAAATAGTTTTGACACCTAGGGATGGGAAG
AAGGTCAATTGAGGAAATTGGATGATTACAAAACTTTCAATATTTATAAA
TGAACTTTACAATGAGTAAATTACGTACCAGAAAAGATTTTCCATAACTA
TATACAACTCGTCATAGCTGAAATGGGAGGAGAATGAAGGCCATTATGCA
AAAAGATGAGAGTAATGTCGTTGTTTGACGACGACTATTACAGTGTTTGC
CTTGGAGAGCGAATGACCAAAATGCAATTATTCATGATGGTGACCAATTT
CTTTCGCAACTTTGAAGATTCATTGGGTCCGGGAGAAAAGTTACCGGCTG
CTAGACGGAATTTTTGGAATAACATTAAACCCACCTGTTTTTACGACAGT
GCTTAAGAGAAGAATACAAGGGAACTAACGCTTTATTGTGTAATATTTAC
CGTATATATTGATTAATCATAGCTTGAAATCGAGGCAAAcaaatttctac
tttttcctAAGCGCTTTATGCACTTAAAAGACTTTACGATATAGCGCTGT
TGATTTACCAagatcaatagaccttttcataaattacgtcacggacatca
cttgcctcgttttgaaattattgccatggtgattaactcccagcggattt
tattaaaactactttctattcataaaaaaaggatttcgtgtctcaaggga
cataatcaccatggtaattgtttgaatacgaggcaagtgatgttcgtgaa
ttaatttatgaaaagctcTATGGCAc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009367-exon-sc0000093-1491911889:467330..467637 | TCONS_00009367-exon-sc0000093-1491911889:467330..467637 | Clytia hemisphaerica | exon |
| TCONS_00009367-exon-sc0000093-1510915933:467330..467637 | TCONS_00009367-exon-sc0000093-1510915933:467330..467637 | Clytia hemisphaerica | exon |
| TCONS_00009367-exon-sc0000093-1575043694:467330..467637 | TCONS_00009367-exon-sc0000093-1575043694:467330..467637 | Clytia hemisphaerica | exon |
| TCONS_00009367-exon-sc0000093-1491911889:468121..468432 | TCONS_00009367-exon-sc0000093-1491911889:468121..468432 | Clytia hemisphaerica | exon |
| TCONS_00009367-exon-sc0000093-1510915933:468121..468432 | TCONS_00009367-exon-sc0000093-1510915933:468121..468432 | Clytia hemisphaerica | exon |
| TCONS_00009367-exon-sc0000093-1575043694:468121..468432 | TCONS_00009367-exon-sc0000093-1575043694:468121..468432 | Clytia hemisphaerica | exon |
| TCONS_00009367-exon-sc0000093-1491911889:468797..470505 | TCONS_00009367-exon-sc0000093-1491911889:468797..470505 | Clytia hemisphaerica | exon |
| TCONS_00009367-exon-sc0000093-1510915933:468797..470505 | TCONS_00009367-exon-sc0000093-1510915933:468797..470505 | Clytia hemisphaerica | exon |
| TCONS_00009367-exon-sc0000093-1575043694:468797..470505 | TCONS_00009367-exon-sc0000093-1575043694:468797..470505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000093 | supercontig | sc0000093:467330..470505 + |
Blast
BLAST of TCONS_00009367 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 3.833e-84 Identity = 151/477 (31.66%), Postives = 258/477 (54.09%), Query Frame = 2
Query: 185 KYPKGPFPLPLIGNILLLSKKPFL--DFDEMSKTYGDVFSISFGMNRVVILNSYEGIKEALMTRGTDFAGRPTDSIPAKIASRNFTSLGHGDYSKSWAFLRKLSYKGLHVYGTGMKKIEDIITEEVDKMCSILSQENGQPTLITSFIGNSLVNTICHLCFNKTYHADDPEFKHIMSFSKLIDVGLSPGQAIVIFPWLRFFPDTEKFKNLKLGTKQRDDFTNKMFNEHIESFNPENIRDLTDNLLHLSLDKE---MWKDAGFEEVTQSQLESVVNSIFFAGTLTQLATFQWFVVFIVQNPAYQTKMYQEIVNKFGQKHQITAEDKENLPYSEAVLKETNRLGSIAPLAIPHKTTVDTSIGGHPISKGTKILLNLYSMHHDPAHWDEPEKFKPERWLNADGSLKKEKPSHYFPFGAGTRVCLGDRMAKIQIFLIVTRLLVNFEVSLAPGESMPGLKDGIMGLTYSPASKFKIVLTPRDG 1600
KYPK LPL+G++ L + + +F ++ K YG ++S+ G VI+ ++ KE L+ +G DF+GRP + IAS N + D W R+L+ ++ G +K+E II +E+ +C +L+ NGQ I+ + ++ N I +CFN +Y DPE I ++++ I LS + + PWL+ FP+ + + LK K R+D NK+ + E F ++I ++ D L+ ++ + D E ++ + + + + IF AG T + +W + F++ NP + K+Y+EI G T D+ L EA ++E RL +AP+ IPHK VD+SIG + KGT++++NL+++HH+ W +P++F PER+LN G+ Y PFGAG R C+G+ +A+ ++FLI+ LL F++ + +P L +GI + + S FK+ + R
Sbjct: 26 KYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMAT-LDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPN-KTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSL-EGIPKVVFLIDS-FKVKIKVRQA 498
The following BLAST results are available for this feature:
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