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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009359 ID=TCONS_00009359|Name=TCONS_00009359|organism=Clytia hemisphaerica|type=transcript|length=2598bpRun BLAST on NCBI protein sequence of TCONS_00009359-protein >TCONS_00009359-protein ID=TCONS_00009359-protein|Name=TCONS_00009359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp MSGVSKIHARQIFDSRGNPTVEVDLHTPKGLFRAAVPSGASTGIHEALELRun BLAST on NCBI transcript from alignment at sc0000093:286883..313586+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009359 ID=TCONS_00009359|Name=TCONS_00009359|organism=Clytia hemisphaerica|type=transcript|length=26704bp|location=Sequence derived from alignment at sc0000093:286883..313586+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000093:286883..313586+ >TCONS_00009359 ID=TCONS_00009359|Name=TCONS_00009359|organism=Clytia hemisphaerica|type=CDS|length=5238bp|location=Sequence derived from alignment at sc0000093:286883..313586+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009359 vs. Swiss-Prot (Human)
Match: ENOA (Alpha-enolase OS=Homo sapiens GN=ENO1 PE=1 SV=2) HSP 1 Score: 453.751 bits (1166), Expect = 1.989e-150 Identity = 219/283 (77.39%), Postives = 249/283 (87.99%), Query Frame = 3
Query: 282 VSKIHARQIFDSRGNPTVEVDLHTPKGLFRAAVPSGASTGIHEALELRDKDATKYLGKGVSTAVSNINNIIAPALIEKNIDVTQQTSVDQIMFDLDGTDNKSKLGANAILAVSLAVCKAGAAQKGVPLYQHIADLAGNKKVILPVPAFNVINGGSHAGNKLAMQEFMILPTGAANFTEAMRIGAEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQDNREGLELLKEAIAKAGYTDKVDIGMDVAASEFYIDGKYDLDFKTKEGKDTSKILTGAQLADLYTSF 1130
+ KIHAR+IFDSRGNPTVEVDL T KGLFRAAVPSGASTGI+EALELRD D T+Y+GKGVS AV +IN IAPAL+ K ++VT+Q +D++M ++DGT+NKSK GANAIL VSLAVCKAGA +KGVPLY+HIADLAGN +VILPVPAFNVINGGSHAGNKLAMQEFMILP GAANF EAMRIGAEVYHNLK+VIK+KYG+DATNVGDEGGFAPNI +N+EGLELLK AI KAGYTDKV IGMDVAASEF+ GKYDLDFK+ + D S+ ++ QLADLY SF
Sbjct: 3 ILKIHAREIFDSRGNPTVEVDLFTSKGLFRAAVPSGASTGIYEALELRDNDKTRYMGKGVSKAVEHINKTIAPALVSKKLNVTEQEKIDKLMIEMDGTENKSKFGANAILGVSLAVCKAGAVEKGVPLYRHIADLAGNSEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFREAMRIGAEVYHNLKNVIKEKYGKDATNVGDEGGFAPNILENKEGLELLKTAIGKAGYTDKVVIGMDVAASEFFRSGKYDLDFKSPD--DPSRYISPDQLADLYKSF 283 HSP 2 Score: 274.633 bits (701), Expect = 1.746e-82 Identity = 125/171 (73.10%), Postives = 148/171 (86.55%), Query Frame = 1
Query: 1129 SPD-TSKILTGAQLADLYTSFTENYPIVSMEDVFDQDDWESWSAFNATTSCQIVGDDLTVTNPKRMKTAIEKKACNALLLKVNQIGSVTESIEACKLAQSSGWGVMVSHRSGETEDTFIADLVVGLCAGQIKTGAPCRSERLAKYNQILRIEEELGANAVYAGKKFRHPLA 1638
SPD S+ ++ QLADLY SF ++YP+VS+ED FDQDDW +W F A+ Q+VGDDLTVTNPKR+ A+ +K+CN LLLKVNQIGSVTES++ACKLAQ++GWGVMVSHRSGETEDTFIADLVVGLC GQIKTGAPCRSERLAKYNQ+LRIEEELG+ A +AG+ FR+PLA
Sbjct: 263 SPDDPSRYISPDQLADLYKSFIKDYPVVSIEDPFDQDDWGAWQKFTASAGIQVVGDDLTVTNPKRIAKAVNEKSCNCLLLKVNQIGSVTESLQACKLAQANGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLLRIEEELGSKAKFAGRNFRNPLA 433 The following BLAST results are available for this feature:
BLAST of TCONS_00009359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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