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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009345 ID=TCONS_00009345|Name=TCONS_00009345|organism=Clytia hemisphaerica|type=transcript|length=5532bpRun BLAST on NCBI protein sequence of TCONS_00009345-protein >TCONS_00009345-protein ID=TCONS_00009345-protein|Name=TCONS_00009345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=893bp MVKSNEELYTKGTRIWVPDPDQVWIGAELLEDLKDDQLELTLEDGREVVLRun BLAST on NCBI transcript from alignment at sc0000093:86968..115822+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009345 ID=TCONS_00009345|Name=TCONS_00009345|organism=Clytia hemisphaerica|type=transcript|length=28855bp|location=Sequence derived from alignment at sc0000093:86968..115822+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000093:86968..115822+ >TCONS_00009345 ID=TCONS_00009345|Name=TCONS_00009345|organism=Clytia hemisphaerica|type=CDS|length=50958bp|location=Sequence derived from alignment at sc0000093:86968..115822+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009345 vs. Swiss-Prot (Human)
Match: MYO5A (Unconventional myosin-Va OS=Homo sapiens GN=MYO5A PE=1 SV=2) HSP 1 Score: 1002.66 bits (2591), Expect = 0.000e+0 Identity = 503/834 (60.31%), Postives = 616/834 (73.86%), Query Frame = 2
Query: 140 ELYTKGTRIWVPDPDQVWIGAXXXX--XXXXXXXXXXXXXGR--EVVLDLKVTKSLPPLRNPDILVGSDDLTTLSYLHEAAVLYNLQERFLNSQCIYTYCGIVLVALNPYQSVPLYGQEIISAYSGKSSHEIDPHIYAVAENAYRSMLNLNQNQSIIVSGESGAGKTVSAKYAMRYFANVGGSIAESTVEKKVLASNPIMEAIGNAKTIRNDNSSRFGKYIEINFDTSNSIIGANMRTYLLEKSRVVFQAANERNYHIFHQLCACHDHPDLQDLQLGESTEFYYTQQGENPTIPGVDDAKDFQETCEALSLLGIYSEQQRMIWRILAAILHLGNVSIEVTSKIKDECGIRQEDVHLMMVATLLGIDKNQLRKWLCARKIVATGDVYVKPLTFAEANNGRDALAKHIYSMLFKWIVEHINSSLAIATQRKSFIGVLDIYGFETFEVNSFEQFCINYANEKLQQQFNMHVFKLEQEEYIREQITWSFIDFYDNQSCIDLIETKLGILDLLDEECRMPKGSDSAWALKLYKQHLKTSDHFIKPRMSEKAFIIRHYADDVIYDCDGFVEKNRDLINEEHINLLCASEYELVGELFRSDN-------------TASTHAPRKRTTSRVGKSAPKGKKTVGSEFRDSLKMLMDTLNSTSPHYVRCIKSNDGKEAFQLDLHRCVQQLRACGVLETIRISAAGYPSRWTYNEFFDRYRMLIPWKSINWDSLNDTCNTILSAHIDDDDKFQLGKTKIFFRAGAVAYLERLRSDLLKRSCITIQKNIKCWLACRKFQRMRKSAIAIQCFVRVYQAKRLVQSLRERRATIRIQKIWRGHSTRXLY 2590
ELYTK R+W+PDP++VW AELL+ D L L LE+G+ E LD K TK LP LRNPDILVG +DLT LSYLHE AVL+NL+ RF++S+ IYTYCGIVLVA+NPY+ +P+YG++II+AYSG++ ++DPHI+AVAE AY+ M +NQSIIVSGESGAGKTVSAKYAMRYFA V GS +E+ VE+KVLASNPIME+IGNAKT RNDNSSRFGKYIEI FD IIGANMRTYLLEKSRVVFQA ERNYHIF+QLCA P+ + L+LG + F YT+QG +P I GVDDAK+ T +A +LLGI Q I+RILA ILHLGNV TS+ D C I + L + L+G+D ++ WLC RK+ + Y+KP++ +A N RDALAKHIY+ LF WIV+++N +L A ++ SFIGVLDIYGFETFE+NSFEQFCINYANEKLQQQFNMHVFKLEQEEY++EQI W+ IDFYDNQ CI+LIE+KLGILDLLDEEC+MPKG+D WA KLY HL F KPR+S KAFII+H+AD V Y C+GF+EKN+D + EE I +L +S+++++ ELF+ D T T P K T R G+ A + KKTVG +FR+SL +LM+TLN+T+PHYVRCIK ND K F D R VQQLRACGVLETIRISAAG+PSRWTY EFF RYR+L+ K + D TC +L I D DK+Q GKTKIFFRAG VAYLE+LR+D L+ +CI IQK I+ WL +K+ RMRK+AI +Q +VR YQA+ + LR +A IQK WR + R Y
Sbjct: 5 ELYTKFARVWIPDPEEVWKSAELLKDYKPGDKVLLLHLEEGKDLEYHLDPK-TKELPHLRNPDILVGENDLTALSYLHEPAVLHNLRVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAKLPEFKMLRLGNADNFNYTKQGGSPVIEGVDDAKEMAHTRQACTLLGISESHQMGIFRILAGILHLGNVGF--TSRDADSCTIPPKHEPLCIFCELMGVDYEEMCHWLCHRKLATATETYIKPISKLQATNARDALAKHIYAKLFNWIVDNVNQALHSAVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIESKLGILDLLDEECKMPKGTDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIQHFADKVEYQCEGFLEKNKDTVFEEQIKVLKSSKFKMLPELFQDDEKAISPTSATSSGRTPLTRTPAKPTKGRPGQMAKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDR-KQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKLRADKLRAACIRIQKTIRGWLLRKKYLRMRKAAITMQRYVRGYQARCYAKFLRRTKAATIIQKYWRMYVVRRRY 834 HSP 2 Score: 300.056 bits (767), Expect = 7.514e-82 Identity = 157/400 (39.25%), Postives = 248/400 (62.00%), Query Frame = 1
Query: 4234 DQKTQFTNDKKAEKK-QGMIKFSASVQDDLVRKLVTDLNMEHVEKEM-PGLTAHIMFMSIRYIDFVNQERLMQSYLTTIISSIKKRATEKVGDIDNQAFWLANTYRLYCNMKQFSGEQQYQGRNTREQNEHCLMNFDLSEYRQVLSDACVKIYQDMVHNVQTRINNLIVPGMLEYESIPGVVS---TLRRFKNEKIKRPSEEIITVKDITNKLSAILAVLNAHCVEPSLIKQIFRQIYYFINATMINNILLRKDMCHWSRGLQIKFNLTQLEEWCRTNQLHGKNVVEQLEPITEVVQLLQVNKKSLEDVDGIIAIVKHLNALQVQKLLSMYSP-NEFEPRIPGNLIRTVVSKL-PKLDNMILMYNLKHVTPMAVGYVPSNVNLEKVVIPPDLEINDLVEV 5412
D+ + N + EK QGM+++ + LV+ L+ +L V + PGL A+I+FM +R+ D++N ++ ++S LT+ I+SIKK ++ D + +FWL+NT R +KQ+SGE+ + NT QNEHCL NFDL+EYRQVLSD ++IYQ +V ++ + +IV GMLE+E+I GV T R + I E T+ I +L++ +V+ H ++P LIKQ+ +Q++Y I A +NN+LLRKDMC WS+G+QI++N++QLEEW R L E LEP+ + QLLQV KK+ +D + I ++ L Q+ K+L++Y+P NEFE R+ + IRT+ +L + D+ L+ + KH+ P+ + PS++ LE + IP L + + V
Sbjct: 1458 DEPIRPVNIPRKEKDFQGMLEYKKEDEQKLVKNLILELKPRGVAVNLIPGLPAYILFMCVRHADYLNDDQKVRSLLTSTINSIKKVLKKRGDDFETVSFWLSNTCRFLHCLKQYSGEEGFMKHNTSRQNEHCLTNFDLAEYRQVLSDLAIQIYQQLVRVLENILQPMIVSGMLEHETIQGVSGVKPTGLRKRTSSI--ADEGTYTLDSILRQLNSFHSVMCQHGMDPELIKQVVKQMFYIIGAITLNNLLLRKDMCSWSKGMQIRYNVSQLEEWLRDKNLMNSGAKETLEPLIQAAQLLQVKKKTDDDAEAICSMCNALTTAQIVKVLNLYTPVNEFEERVSVSFIRTIQMRLRDRKDSPQLLMDAKHIFPVTFPFNPSSLALETIQIPASLGLGFISRV 1855 HSP 3 Score: 110.153 bits (274), Expect = 9.703e-24 Identity = 105/327 (32.11%), Postives = 176/327 (53.82%), Query Frame = 1
Query: 2587 LRERRAAIRIQKIWRGHSTRQWFLKVREXXXXXXXXXRGVLARRRLRAXXXXXXXXXXXXYWRMYKTRKEYLKTRKGIILLQCCVRRMAARKELKRLKIEARSVEHLKKQTKGMEIKVISLQQKLNAELQEKKEMQGKIEHMATLE-----------KELHKVQEMKPQLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEDKLNTVEKTKDEEIASLKEALAALQNSLTEQTDRNEQIIKERGELITKRLEEQKEQLTSEITAERASHQKMIGEYARLEQRFDNLQQELQIEKTSP---DKRRRSQFDSDSFELLSTKDSNKPDD 3525
LR +AA IQK WR + R+ + R I +Q+ +RG LAR R R +++ K+VIIQK R + R Y ++ II LQCC RRM A++ELK+LKIEARSVE KK GME K++ LQ+K++ ++ K+ + +E + LE +L ++Q + + T L+ E +L K + K +E+ + ++ ++ +++LKE L+ R Q KE E + K+L E+ +QL ++ ER +Q ++ E++RLE+R+D+L++E+ + P KR S S+ E + + + + +D
Sbjct: 812 LRRTKAATIIQKYWRMYVVRRRYKIRRAATIVLQSYLRGFLARNRYRKILREHKAVIIQKRVRGWLARTHYKRSMHAIIYLQCCFRRMMAKRELKKLKIEARSVERYKKLHIGMENKIMQLQRKVD---EQNKDYKCLVEKLTNLEGIYNSETEKLRSDLERLQLSEEEAKVATGRVLSLQEEIAKLRKDLEQTRSEKKCIEEHADRYKQETEQLVSNLKEENTLLKQEKEALNHRIVQQAKEMTETMEKKLVEETKQLELDLNDERLRYQNLLNEFSRLEERYDDLKEEMTLMVHVPKPGHKRTDSTHSSNESEYIFSSEIAEMED 1135 The following BLAST results are available for this feature:
BLAST of TCONS_00009345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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