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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009343 ID=TCONS_00009343|Name=TCONS_00009343|organism=Clytia hemisphaerica|type=transcript|length=983bp
GTAAACTCTGTATAAAAGGAGTTGGAGATTCTCAGTCAAATCACATCAAC
TCATCATCAGCTTACTACTGACTCAACAACAAACAGCCAGTAGTAAACCC
TCTTGAAGATTCGTCAACTCATCAAACCAAACAACTAACTAAATCAATCA
TGAAGACCGCCATCTTTTTTGCAGCTTTTTTGGCAGtcgCCCTGGCTGAT
TTGACATTCTGGGAAGAGAGAATGTCCACGGAGAAGAAAAACGATGCTCT
CCCAGAAGTACCATGCCCTGACACCTTGTGCAATGGAAAAGCTGATGGAA
ACCATTATTACTACCCATACTACACTGGTGCTTACAGATACAACTTCTTC
CTCCAATGCTTAGGTGGAAAAGCTACCTGCCAAGCTTGTTTCCCATTGTC
CTTGGAATACAGCTATGAATGCAACCAATGTTTGTACAAGAAATCTGATG
CTTGCGTCACCACAAAACCATGGAAACCAGTCACCACTTTCACTTGTCCA
GACAGATGTCCATCTTATGGACCTAAATACACTGGCAATGTCGCTGATCC
AGCTCAAAGCAAACAATACGTTGCATGCTGGGAAGGTGTCACTGTCGGAT
GTATTGCTTGTCCAGGAAACTTGATGTTTAACGAACAAGAGAACGCTTGT
TTGTTTGAAGGAAAATACATCACTGAGCCAACCAAACAGTAAATCACCAA
TCGAAATNTGTTTAACGAACAAGAGAACGCTTGTTTGTTTGAAGGAAAAT
ACATCACTGAGCCAACCAAACAGTAAATCATCAATCGAAATCAACAACTG
ATCCTTACGGCAATACATCAGAAATTTGACGAATTCTAATCTTTTTGCGA
CGATGTTAAGCACTTAAATCTTATCTTGAAAATCTTTTCGCTCACTTTCT
TTTCCTCTcttcctttctttctttctgcTTTCCTCGATTCTTTCTTGGTC
TAACTAATTAAATCCTacctttctctctctctc Run BLAST on NCBI protein sequence of TCONS_00009343-protein >TCONS_00009343-protein ID=TCONS_00009343-protein|Name=TCONS_00009343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MKTAIFFAAFLAVALADLTFWEERMSTEKKNDALPEVPCPDTLCNGKADG
NHYYYPYYTGAYRYNFFLQCLGGKATCQACFPLSLEYSYECNQCLYKKSD
ACVTTKPWKPVTTFTCPDRCPSYGPKYTGNVADPAQSKQYVACWEGVTVG
CIACPGNLMFNEQENACLFEGKYITEPTKQ Run BLAST on NCBI transcript from alignment at sc0000093:73089..74377+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009343 ID=TCONS_00009343|Name=TCONS_00009343|organism=Clytia hemisphaerica|type=transcript|length=1289bp|location=Sequence derived from alignment at sc0000093:73089..74377+ (Clytia hemisphaerica)
GTAAACTCTGTATAAAAGGAGTTGGAGATTCTCAGTCAAATCACATCAAC
TCATCATCAGCTTACTACTGACTCAACAACAAACAGCCAGTAGTAAACCC
TCTTGAAGATTCGTCAACTCATCAAACCAAACAACTAACTAAATCAATCA
TGAAGACCGCCATCTTTTTTGCAGCTTTTTTGGCAGGTATAACACGTCAG
TCAATCCTCATTTTACTCAACTCAAGTTATGTTTCTGCTGCAAATCATGG
ATAGACTTTCTCACTGAATCTGGATTGGTCTTCAAATACTGTAAAATCTA
CACGGAGGCAGTCTTTATTCTTTAATAGTACATGTTTATGGCTTCTATAC
TAGTTCAAGATACATTCTCGATACATAAATTTAGCTCTATTTTCCCATAT
GAATCTTtgactttctttttttcagtcgCCCTGGCTGATTTGACATTCTG
GGAAGAGAGAATGTCCACGGAGAAGAAAAACGATGCTCTCCCAGAAGTAC
CATGCCCTGACACCTTGTGCAATGGAAAAGCTGATGGAAACCATTATTAC
TACCCATACTACACTGGTGCTTACAGATACAACTTCTTCCTCCAATGCTT
AGGTGGAAAAGCTACCTGCCAAGCTTGTTTCCCATTGTCCTTGGAATACA
GCTATGAATGCAACCAATGTTTGTACAAGAAATCTGATGCTTGCGTCACC
ACAAAACCATGGAAACCAGTCACCACTTTCACTTGTCCAGACAGATGTCC
ATCTTATGGACCTAAATACACTGGCAATGTCGCTGATCCAGCTCAAAGCA
AACAATACGTTGCATGCTGGGAAGGTGTNTAAATACACTGGTAATGTCGC
TGATCCAGCTCAAAGTAAACAATACGTTGCATGCTGGGAAGGTGTCACTG
TCGGATGTATTGCTTGTCCAGGAAACTTGATGTTTAACGAACAAGAGAAC
GCTTGTTTGTTTGAAGGAAAATACATCACTGAGCCAACCAAACAGTAAAT
CACCAATCGAAATNTGTTTAACGAACAAGAGAACGCTTGTTTGTTTGAAG
GAAAATACATCACTGAGCCAACCAAACAGTAAATCATCAATCGAAATCAA
CAACTGATCCTTACGGCAATACATCAGAAATTTGACGAATTCTAATCTTT
TTGCGACGATGTTAAGCACTTAAATCTTATCTTGAAAATCTTTTCGCTCA
CTTTCTTTTCCTCTcttcctttctttctttctgcTTTCCTCGATTCTTTC
TTGGTCTAACTAATTAAATCCTacctttctctctctctc Coding sequence (CDS) from alignment at sc0000093:73089..74377+ >TCONS_00009343 ID=TCONS_00009343|Name=TCONS_00009343|organism=Clytia hemisphaerica|type=CDS|length=1629bp|location=Sequence derived from alignment at sc0000093:73089..74377+ (Clytia hemisphaerica)
ATGAAGACCGCCATCTTTTTTGCAGCTTTTTTGGCAGtcgCCCTGGCTGA
TTTGACATTCTGGGAAGAGAGAATGTCCACGGAGAAGAAAAACGATGCTC
TCCCAGAAGTACCATGCCCTGACACCTTGTGCAATGGAAAAGCTGATGGA
AACCATTATTACTACCCATACTACACTGGTGCTTACAGATACAACTTCTT
CCTCCAATGCTTAGGTGGAAAAGCTACCTGCCAAGCTTGTTTCCCATTGT
CCTTGGAATACAGCTATGAATGCAACCAATGTTTGTACAAGAAATCTGAT
GCTTGCGTCACCACAAAACCATGGAAACCAGTCACCACTTTCACTTGTCC
AGACAGATGTCCATCTTATGGACCTAAATACACTGGCAATGTCGCTGATC
CAGCTCAAAGCAAACAATACGTTGCATGCTGGGAAGGTGTCACTGTCGGA
TGTATTGCTTGTCCAGGAAACTTGATGTTTAACGAACAAGAGAACGCTTG
TTTGTTTGAAGGAAAATACATCACTGAGCCAACCAAACAGTAAATGAAGA
CCGCCATCTTTTTTGCAGCTTTTTTGGCAGtcgCCCTGGCTGATTTGACA
TTCTGGGAAGAGAGAATGTCCACGGAGAAGAAAAACGATGCTCTCCCAGA
AGTACCATGCCCTGACACCTTGTGCAATGGAAAAGCTGATGGAAACCATT
ATTACTACCCATACTACACTGGTGCTTACAGATACAACTTCTTCCTCCAA
TGCTTAGGTGGAAAAGCTACCTGCCAAGCTTGTTTCCCATTGTCCTTGGA
ATACAGCTATGAATGCAACCAATGTTTGTACAAGAAATCTGATGCTTGCG
TCACCACAAAACCATGGAAACCAGTCACCACTTTCACTTGTCCAGACAGA
TGTCCATCTTATGGACCTAAATACACTGGCAATGTCGCTGATCCAGCTCA
AAGCAAACAATACGTTGCATGCTGGGAAGGTGTCACTGTCGGATGTATTG
CTTGTCCAGGAAACTTGATGTTTAACGAACAAGAGAACGCTTGTTTGTTT
GAAGGAAAATACATCACTGAGCCAACCAAACAGTAAATGAAGACCGCCAT
CTTTTTTGCAGCTTTTTTGGCAGtcgCCCTGGCTGATTTGACATTCTGGG
AAGAGAGAATGTCCACGGAGAAGAAAAACGATGCTCTCCCAGAAGTACCA
TGCCCTGACACCTTGTGCAATGGAAAAGCTGATGGAAACCATTATTACTA
CCCATACTACACTGGTGCTTACAGATACAACTTCTTCCTCCAATGCTTAG
GTGGAAAAGCTACCTGCCAAGCTTGTTTCCCATTGTCCTTGGAATACAGC
TATGAATGCAACCAATGTTTGTACAAGAAATCTGATGCTTGCGTCACCAC
AAAACCATGGAAACCAGTCACCACTTTCACTTGTCCAGACAGATGTCCAT
CTTATGGACCTAAATACACTGGCAATGTCGCTGATCCAGCTCAAAGCAAA
CAATACGTTGCATGCTGGGAAGGTGTCACTGTCGGATGTATTGCTTGTCC
AGGAAACTTGATGTTTAACGAACAAGAGAACGCTTGTTTGTTTGAAGGAA
AATACATCACTGAGCCAACCAAACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009343-exon-sc0000093-1491911889:73089..73274 | TCONS_00009343-exon-sc0000093-1491911889:73089..73274 | Clytia hemisphaerica | exon |
| TCONS_00009343-exon-sc0000093-1510915933:73089..73274 | TCONS_00009343-exon-sc0000093-1510915933:73089..73274 | Clytia hemisphaerica | exon |
| TCONS_00009343-exon-sc0000093-1575043694:73089..73274 | TCONS_00009343-exon-sc0000093-1575043694:73089..73274 | Clytia hemisphaerica | exon |
| TCONS_00009343-exon-sc0000093-1491911889:73514..73912 | TCONS_00009343-exon-sc0000093-1491911889:73514..73912 | Clytia hemisphaerica | exon |
| TCONS_00009343-exon-sc0000093-1510915933:73514..73912 | TCONS_00009343-exon-sc0000093-1510915933:73514..73912 | Clytia hemisphaerica | exon |
| TCONS_00009343-exon-sc0000093-1575043694:73514..73912 | TCONS_00009343-exon-sc0000093-1575043694:73514..73912 | Clytia hemisphaerica | exon |
| TCONS_00009343-exon-sc0000093-1491911889:73980..74377 | TCONS_00009343-exon-sc0000093-1491911889:73980..74377 | Clytia hemisphaerica | exon |
| TCONS_00009343-exon-sc0000093-1510915933:73980..74377 | TCONS_00009343-exon-sc0000093-1510915933:73980..74377 | Clytia hemisphaerica | exon |
| TCONS_00009343-exon-sc0000093-1575043694:73980..74377 | TCONS_00009343-exon-sc0000093-1575043694:73980..74377 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000093 | supercontig | sc0000093:73089..74377 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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