TCONS_00009340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009340
Unique NameTCONS_00009340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009340 ID=TCONS_00009340|Name=TCONS_00009340|organism=Clytia hemisphaerica|type=transcript|length=606bp
GTCCACGCACACACACAGACAAGAATTTGTAACGTTGATTGATGAATTGA
TATTGAGGTTCAAgttcaaactaaaaaataaaattaatgaaaattccTAA
GTTTCtaattaacaaaataaattgagCCTTGAATTATAAATGTATTTGAc
aagtttataaaaaaaacaaacgacGCATAAAACACGAGAATGCACAAGAG
AGAAAAGACGCTGAAAAAGAAAGCACTGGGAAAACAAAGGACGCTGGGGA
CAAAAAGACACTGACAAGAACAAGACACTGAAAATTGaactataaaatat
ttttgcttttttaaatatactaaaaatttgATGAATCACATTACACTCCC
ACCAAAAAGGCAAACATTTACCATAATTTACGAATTCATTTACGAATCAA
ATCAACATATAAAGCCATTTCACCCAACTCTTTCATCATATCACAGTCGT
CCACGTGATGAATAACGACCAATGATCGAACAGCTCGCTTTGTTTCTCGA
AAAACGTTTTCATTTTCGTTACGATATCGAATGATGGCCTTACGTGCCAC
CCCATCACGACCGAATTCGAGACTCTTGACGATTCCATAGGTGTACGAGT
TTGACN
Run BLAST on NCBI

transcript from alignment at sc0000091:647579..648184

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009340 ID=TCONS_00009340|Name=TCONS_00009340|organism=Clytia hemisphaerica|type=transcript|length=606bp|location=Sequence derived from alignment at sc0000091:647579..648184 (Clytia hemisphaerica)
NGTCAAACTCGTACACCTATGGAATCGTCAAGAGTCTCGAATTCGGTCGT
GATGGGGTGGCACGTAAGGCCATCATTCGATATCGTAACGAAAATGAAAA
CGTTTTTCGAGAAACAAAGCGAGCTGTTCGATCATTGGTCGTTATTCATC
ACGTGGACGACTGTGATATGATGAAAGAGTTGGGTGAAATGGCTTTATAT
GTTGATTTGATTCGTAAATGAATTCGTAAATTATGGTAAATGTTTGCCTT
TTTGGTGGGAGTGTAATGTGATTCATcaaatttttagtatatttaaaaaa
gcaaaaatattttatagttCAATTTTCAGTGTCTTGTTCTTGTCAGTGTC
TTTTTGTCCCCAGCGTCCTTTGTTTTCCCAGTGCTTTCTTTTTCAGCGTC
TTTTCTCTCTTGTGCATTCTCGTGTTTTATGCgtcgtttgttttttttat
aaacttgTCAAATACATTTATAATTCAAGGctcaatttattttgttaatt
aGAAACTTAggaattttcattaattttattttttagtttgaacTTGAACC
TCAATATCAATTCATCAATCAACGTTACAAATTCTTGTCTGTGTGTGTGC
GTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005231XLOC_005231Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009340-exon-sc0000091-1491911889:647579..648184TCONS_00009340-exon-sc0000091-1491911889:647579..648184Clytia hemisphaericaexon
TCONS_00009340-exon-sc0000091-1510915933:647579..648184TCONS_00009340-exon-sc0000091-1510915933:647579..648184Clytia hemisphaericaexon
TCONS_00009340-exon-sc0000091-1575043694:647579..648184TCONS_00009340-exon-sc0000091-1575043694:647579..648184Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:647579..648184 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.44399	1.81093	0.867906	0.955923	1.68718	1.238	0.284823	0.537804	0.130906	0	0.32426	0.316243	0.134434	0.864113	0.355209	0.263396	0	0.605477	0.312271	0.99407	2.55653	1.3357	1.4389	1.53389	0.811761	1.1961	0.802361	1.243	4.21167	3.64645
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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