TCONS_00009339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009339
Unique NameTCONS_00009339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009339 ID=TCONS_00009339|Name=TCONS_00009339|organism=Clytia hemisphaerica|type=transcript|length=355bp
TGGATACTTGATCATCGGCGAGGATTCGACCAGTGTACACCAAGATTCCA
TTGTCGTTGAGTCTGgtgatattttcatattttgattttggaaggAATTG
AATTATCTCTTGTGATGCTTTCCTGTAGAAATACGTCTCAGCAGCTTTGA
TCTCGTCATCGTTAATGAGAATGGTTGAATCTTTCATCATGGTGAGTTGG
GAACGAGATTTATCTTTTGTACGTTTGAGTAGAGTGTAAACAAACTTGAA
GACAATTGCCATGATACGAATAACTGTAGAAAACTTGTGTTGATTTGGGT
TCAGAAGGTATTGAGAGAATTTATACCTTTCAGATGTTTCTTTGAATGAT
AAAAN
Run BLAST on NCBI

protein sequence of TCONS_00009339-protein

>TCONS_00009339-protein ID=TCONS_00009339-protein|Name=TCONS_00009339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
XLSFKETSERYKFSQYLLNPNQHKFSTVIRIMAIVFKFVYTLLKRTKDKS
RSQLTMMKDSTILINDDEIKAAETYFYRKASQEIIQFLPKSKYENITRLN
DNGILVYTGRILADDQVS
Run BLAST on NCBI

transcript from alignment at sc0000091:645787..646141

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009339 ID=TCONS_00009339|Name=TCONS_00009339|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0000091:645787..646141 (Clytia hemisphaerica)
NTTTTATCATTCAAAGAAACATCTGAAAGGTATAAATTCTCTCAATACCT
TCTGAACCCAAATCAACACAAGTTTTCTACAGTTATTCGTATCATGGCAA
TTGTCTTCAAGTTTGTTTACACTCTACTCAAACGTACAAAAGATAAATCT
CGTTCCCAACTCACCATGATGAAAGATTCAACCATTCTCATTAACGATGA
CGAGATCAAAGCTGCTGAGACGTATTTCTACAGGAAAGCATCACAAGAGA
TAATTCAATTccttccaaaatcaaaatatgaaaatatcacCAGACTCAAC
GACAATGGAATCTTGGTGTACACTGGTCGAATCCTCGCCGATGATCAAGT
ATCCA

Coding sequence (CDS) from alignment at sc0000091:645787..646141

>TCONS_00009339 ID=TCONS_00009339|Name=TCONS_00009339|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0000091:645787..646141 (Clytia hemisphaerica)
NTTTTATCATTCAAAGAAACATCTGAAAGGTATAAATTCTCTCAATACCT
TCTGAACCCAAATCAACACAAGTTTTCTACAGTTATTCGTATCATGGCAA
TTGTCTTCAAGTTTGTTTACACTCTACTCAAACGTACAAAAGATAAATCT
CGTTCCCAACTCACCATGATGAAAGATTCAACCATTCTCATTAACGATGA
CGAGATCAAAGCTGCTGAGACGTATTTCTACAGGAAAGCATCACAAGAGA
TAATTCAATTccttccaaaatcaaaatatgaaaatatcacCAGACTCAAC
GACAATGGAATCTTGGTGTACACTGGTCGAATCCTCGCCGATGATCAAGT
ATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005230XLOC_005230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009339-exon-sc0000091-1491911889:645787..646141TCONS_00009339-exon-sc0000091-1491911889:645787..646141Clytia hemisphaericaexon
TCONS_00009339-exon-sc0000091-1510915933:645787..646141TCONS_00009339-exon-sc0000091-1510915933:645787..646141Clytia hemisphaericaexon
TCONS_00009339-exon-sc0000091-1575043694:645787..646141TCONS_00009339-exon-sc0000091-1575043694:645787..646141Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009339-proteinTCONS_00009339-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:645787..646141 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.62859	2.73384	0	0.978357	0.655393	2.00699	0.312412	0.584953	0.20477	0	0	0	0.808052	1.17484	0.413947	0.444229	0.182418	0.186972	0.969835	1.45116	2.62124	0.94686	1.56516	1.51982	9.22754	4.57327	0.999596	0.711197	6.15842	5.35457
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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