TCONS_00009335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009335
Unique NameTCONS_00009335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009335 ID=TCONS_00009335|Name=TCONS_00009335|organism=Clytia hemisphaerica|type=transcript|length=569bp
taaaattCCTTACACGCGTCATCATTTCTCAGAATGGCTGAAGAATGACA
ATCGAAACGTCAATCACTTTCTTGTTTCTCCAACTTCCAAAAATGAAATC
TCCAAAGTTATTTCATCTCTCAGTGAACATAAAGCTTCAGGTCCGAACAG
CATTCCTTTTCGAATTATCTCCTCAAATCTGAAAAGTCTTTCTTCAATCT
TTGCAGATATCATAAATCTCTCTTTCTTTACTGGTATCTTTCCTAGTCAA
CtcaaagaagcaaaagtcatcccCGTCTTCAAAAATAAGGGCTCTACATT
TGATGCTGAAAACTACAGGCCCATCTCTCTTCTTTCAAACATCgacaaaa
ttttctaaaaacttATGCACAAGCGGCTTATAAACTTTCTTCATCAATCT
ATTTCTATATATCCTTTACAATTTGGTTTTCGTTCCAACCATTCAACTGA
GACAGCTCTTCTTTACTGcataaacaaaatttctaaagctCTTGATGATG
GTGAGTATGGATGTTCTATCTTTATCGATTTGCAAAAAGCCTTTGATACC
GTCGATCACTCAATTCTAC
Run BLAST on NCBI

protein sequence of TCONS_00009335-protein

>TCONS_00009335-protein ID=TCONS_00009335-protein|Name=TCONS_00009335-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
KIPYTRHHFSEWLKNDNRNVNHFLVSPTSKNEISKVISSLSEHKASGPNS
IPFRIISSNLKSLSSIFADIINLSFFTGIFPSQLKEAKVIPVFKNKGSTF
DAENYRPISLLSNIDKIF
Run BLAST on NCBI

transcript from alignment at sc0000091:618557..619125

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009335 ID=TCONS_00009335|Name=TCONS_00009335|organism=Clytia hemisphaerica|type=transcript|length=569bp|location=Sequence derived from alignment at sc0000091:618557..619125 (Clytia hemisphaerica)
GTAGAATTGAGTGATCGACGGTATCAAAGGCTTTTTGCAAATCGATAAAG
ATAGAACATCCATACTCACCATCATCAAGagctttagaaattttgtttat
gCAGTAAAGAAGAGCTGTCTCAGTTGAATGGTTGGAACGAAAACCAAATT
GTAAAGGATATATAGAAATAGATTGATGAAGAAAGTTTATAAGCCGCTTG
TGCATaagtttttagaaaattttgtcGATGTTTGAAAGAAGAGAGATGGG
CCTGTAGTTTTCAGCATCAAATGTAGAGCCCTTATTTTTGAAGACGggga
tgacttttgcttctttgaGTTGACTAGGAAAGATACCAGTAAAGAAAGAG
AGATTTATGATATCTGCAAAGATTGAAGAAAGACTTTTCAGATTTGAGGA
GATAATTCGAAAAGGAATGCTGTTCGGACCTGAAGCTTTATGTTCACTGA
GAGATGAAATAACTTTGGAGATTTCATTTTTGGAAGTTGGAGAAACAAGA
AAGTGATTGACGTTTCGATTGTCATTCTTCAGCCATTCTGAGAAATGATG
ACGCGTGTAAGGaatttta

Coding sequence (CDS) from alignment at sc0000091:618557..619125

>TCONS_00009335 ID=TCONS_00009335|Name=TCONS_00009335|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000091:618557..619125 (Clytia hemisphaerica)
ttagaaaattttgtcGATGTTTGAAAGAAGAGAGATGGGCCTGTAGTTTT
CAGCATCAAATGTAGAGCCCTTATTTTTGAAGACGgggatgacttttgct
tctttgaGTTGACTAGGAAAGATACCAGTAAAGAAAGAGAGATTTATGAT
ATCTGCAAAGATTGAAGAAAGACTTTTCAGATTTGAGGAGATAATTCGAA
AAGGAATGCTGTTCGGACCTGAAGCTTTATGTTCACTGAGAGATGAAATA
ACTTTGGAGATTTCATTTTTGGAAGTTGGAGAAACAAGAAAGTGATTGAC
GTTTCGATTGTCATTCTTCAGCCATTCTGAGAAATGATGACGCGTGTAAG
Gaatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005226XLOC_005226Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009335-proteinTCONS_00009335-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009335-exon-sc0000091-1491911889:618557..619125TCONS_00009335-exon-sc0000091-1491911889:618557..619125Clytia hemisphaericaexon
TCONS_00009335-exon-sc0000091-1510915933:618557..619125TCONS_00009335-exon-sc0000091-1510915933:618557..619125Clytia hemisphaericaexon
TCONS_00009335-exon-sc0000091-1575043694:618557..619125TCONS_00009335-exon-sc0000091-1575043694:618557..619125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:618557..619125 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86434	1.31212	2.13628	2.26936	1.12156	0.892191	0.411217	0.400891	0.729956	0.670141	0.470565	1.42885	0.935203	0.877805	0.391717	0.489135	0.147961	0.824489	0.641071	0.548119	0.804194	1.44636	0.752468	0.554748	0.59558	0.830866	1.11765	1.10842	1.0102	1.27598
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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