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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009332 ID=TCONS_00009332|Name=TCONS_00009332|organism=Clytia hemisphaerica|type=transcript|length=2015bp
TCCAATGCACGCTCTATACTGCTGCAAGCTTATTCCCATAGCAAGCCATA
CCGTTCGACAAGTACAAGACCAGAAATTGATTTACAAGAATAGCCCTCAC
AAACacacaaaattgtaaaaaaagtaTGACAAATTATTACTAAAAGTGAG
AAGNAATACAAAAACTTTGTTTTCCAGCTTAAGGATTCTTTCTTCATGAT
CCTGACCCTCAATCTCAAGAGAAGCAATCTTCCTGTCTTGGTCATCAATA
CGTTTAGCCATCTCAATAAACATTTCTTTGATCTCACTCACGTCTTCTTT
GGAAGCTAAAGACTTCGACAATTTAAGAAGCTTTGCATCAAGTTTTGTAT
CTAATAAATCTCCATATTTTTCAACATCAGAAGAACTTCTTGTAATTTTG
TTTGCTTGACTCATAGTTCCAATCGAAAACAAAACCAGTAAAACAGCAAA
ATAAATGTATCAAAAAGATTTCATCCAAAGTACAGcaaaaaactagcaaa
aaactttcaacacGCCTTCAAAGTTTTGACACGTCAGCAGAGCATGTCCT
TCCTCTACCGTGGTCTACTCACGTATCACTGACTACTGACGTATCTTTGA
TTACCATTGCGGCAAACtaataaaaaatcatgaatCGCATTTGAATctca
tatttcaaaacaaagataaTGGACCGTTTGTTATTCACTTAGCTTATAAA
ACCTTCCCTGTCCATGTTGGATTGCTTCTTGATGACACAGTGAAATCTAA
CATACAAGATTTAGGATTACAAAAACTTCGATCCATACGAGTTAAAGATG
AAATGACAAATTTAATTATTGTTGAAAACATATTGGATCTTGTTCAAAAT
CCTACCCTTAAGATCAAAGATATACCAAACATTTTAACCAACTATCTTCG
CTCtttgaattttggtttgattgacATTCGAATGGATAGATATTTGGGAA
CAGATAATACTGAAGATATGTTTTATTCGAATGGTGTTTTCAAGGAAGAC
ATTGAATTACTTTGTACAGTCGAATGTAGTGATGACCAGTGCCTAAGGAA
ACATTTGTTCGAAGTAAATGGTTTAAAAACTTTGGTTATCAAATCACTTA
CGAGAGTTCTCGAGATTGATTCAAAGTTTGCTTCCCTTGAAGGTGTTAAA
AATCATATTAGACAAGAATGGAACATTCCCAGTCATGGTCAAATATACAT
GCATGGAAACAGGGAGATAACCAAGGATGAACTTCTCATTGatgttttca
atcatttttcaagTGAAGAAGAGAGATCAAAGAAATGTTTGTACCTTAAT
CTAATCATTCTTGAACCCAAAGATATCACCGTGTCCTTGAAATGCCCTTA
TGGAGAACGAATAGGGTTACCGGGTACTATCACAGTTAAAGAAACCTTAA
CTATTGGAGATCTAGAGGAAACGTTATCAAATATGACAGGGTGCAGTATT
TCATTGTACCAACAAGAACAGGGTTGGTTCTCAATGCACAAAGACCAACG
GCGCCTATTCGAATTTTCGCCCAGTTTTATTGCTCACAGGACCATAAAAC
TCCGCATTTTGGTAGAATGTGTTAAATGTAAGAAACCTGACATAATCGAT
GAACAGTCAATTATTTCGAATCATGAAACGGTACACGAAGCCATGGCTCG
AATCACTAACCAAAATGGAACGATCCAATGCATTTGTGGTTTTGATATGC
CtgtcaaaatgaaattgtctAGTAAAAACTCTGAAATAAAAGAACGGACT
GTTTTATTAGATACACCCTCTGACTATGTTTTGATTGTGCGAGCACAACC
TACTCTAATCACGCGATTGAGAGGTGCTGTTGGCTTGAATTAAAAGAATA
TCATGACTACGATAtttattttctagatttttttatcaataataaAAGTT
CGTCATAATAACTTTCTATGTAATCCTGAGTTtcaagtactcttaggttc
caaataaacgggcaccccgcttgttaatttttcgaaaattttccaacccc
ccaccttatttttgg Run BLAST on NCBI protein sequence of TCONS_00009332-protein >TCONS_00009332-protein ID=TCONS_00009332-protein|Name=TCONS_00009332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MTNLIIVENILDLVQNPTLKIKDIPNILTNYLRSLNFGLIDIRMDRYLGT
DNTEDMFYSNGVFKEDIELLCTVECSDDQCLRKHLFEVNGLKTLVIKSLT
RVLEIDSKFASLEGVKNHIRQEWNIPSHGQIYMHGNREITKDELLIDVFN
HFSSEEERSKKCLYLNLIILEPKDITVSLKCPYGERIGLPGTITVKETLT
IGDLEETLSNMTGCSISLYQQEQGWFSMHKDQRRLFEFSPSFIAHRTIKL
RILVECVKCKKPDIIDEQSIISNHETVHEAMARITNQNGTIQCICGFDMP
VKMKLSSKNSEIKERTVLLDTPSDYVLIVRAQPTLITRLRGAVGLN Run BLAST on NCBI transcript from alignment at sc0000091:582899..584913 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009332 ID=TCONS_00009332|Name=TCONS_00009332|organism=Clytia hemisphaerica|type=transcript|length=2015bp|location=Sequence derived from alignment at sc0000091:582899..584913 (Clytia hemisphaerica)
ccaaaaataaggtggggggttggaaaattttcgaaaaattaacaagcggg
gtgcccgtttatttggaacctaagagtacttgaAACTCAGGATTACATAG
AAAGTTATTATGACGAACTTttattattgataaaaaaatctagaaaataa
aTATCGTAGTCATGATATTCTTTTAATTCAAGCCAACAGCACCTCTCAAT
CGCGTGATTAGAGTAGGTTGTGCTCGCACAATCAAAACATAGTCAGAGGG
TGTATCTAATAAAACAGTCCGTTCTTTTATTTCAGAGTTTTTACTagaca
atttcattttgacaGGCATATCAAAACCACAAATGCATTGGATCGTTCCA
TTTTGGTTAGTGATTCGAGCCATGGCTTCGTGTACCGTTTCATGATTCGA
AATAATTGACTGTTCATCGATTATGTCAGGTTTCTTACATTTAACACATT
CTACCAAAATGCGGAGTTTTATGGTCCTGTGAGCAATAAAACTGGGCGAA
AATTCGAATAGGCGCCGTTGGTCTTTGTGCATTGAGAACCAACCCTGTTC
TTGTTGGTACAATGAAATACTGCACCCTGTCATATTTGATAACGTTTCCT
CTAGATCTCCAATAGTTAAGGTTTCTTTAACTGTGATAGTACCCGGTAAC
CCTATTCGTTCTCCATAAGGGCATTTCAAGGACACGGTGATATCTTTGGG
TTCAAGAATGATTAGATTAAGGTACAAACATTTCTTTGATCTCTCTTCTT
CActtgaaaaatgattgaaaacatCAATGAGAAGTTCATCCTTGGTTATC
TCCCTGTTTCCATGCATGTATATTTGACCATGACTGGGAATGTTCCATTC
TTGTCTAATATGATTTTTAACACCTTCAAGGGAAGCAAACTTTGAATCAA
TCTCGAGAACTCTCGTAAGTGATTTGATAACCAAAGTTTTTAAACCATTT
ACTTCGAACAAATGTTTCCTTAGGCACTGGTCATCACTACATTCGACTGT
ACAAAGTAATTCAATGTCTTCCTTGAAAACACCATTCGAATAAAACATAT
CTTCAGTATTATCTGTTCCCAAATATCTATCCATTCGAATgtcaatcaaa
ccaaaattcaaaGAGCGAAGATAGTTGGTTAAAATGTTTGGTATATCTTT
GATCTTAAGGGTAGGATTTTGAACAAGATCCAATATGTTTTCAACAATAA
TTAAATTTGTCATTTCATCTTTAACTCGTATGGATCGAAGTTTTTGTAAT
CCTAAATCTTGTATGTTAGATTTCACTGTGTCATCAAGAAGCAATCCAAC
ATGGACAGGGAAGGTTTTATAAGCTAAGTGAATAACAAACGGTCCAttat
ctttgttttgaaatatgagATTCAAATGCGattcatgattttttattaGT
TTGCCGCAATGGTAATCAAAGATACGTCAGTAGTCAGTGATACGTGAGTA
GACCACGGTAGAGGAAGGACATGCTCTGCTGACGTGTCAAAACTTTGAAG
GCgtgttgaaagttttttgctagttttttgCTGTACTTTGGATGAAATCT
TTTTGATACATTTATTTTGCTGTTTTACTGGTTTTGTTTTCGATTGGAAC
TATGAGTCAAGCAAACAAAATTACAAGAAGTTCTTCTGATGTTGAAAAAT
ATGGAGATTTATTAGATACAAAACTTGATGCAAAGCTTCTTAAATTGTCG
AAGTCTTTAGCTTCCAAAGAAGACGTGAGTGAGATCAAAGAAATGTTTAT
TGAGATGGCTAAACGTATTGATGACCAAGACAGGAAGATTGCTTCTCTTG
AGATTGAGGGTCAGGATCATGAAGAAAGAATCCTTAAGCTGGAAAACAAA
GTTTTTGTATTNCTTCTCACTTTTAGTAATAATTTGTCAtacttttttta
caattttgtgtGTTTGTGAGGGCTATTCTTGTAAATCAATTTCTGGTCTT
GTACTTGTCGAACGGTATGGCTTGCTATGGGAATAAGCTTGCAGCAGTAT
AGAGCGTGCATTGGA Coding sequence (CDS) from alignment at sc0000091:582899..584913 >TCONS_00009332 ID=TCONS_00009332|Name=TCONS_00009332|organism=Clytia hemisphaerica|type=CDS|length=1041bp|location=Sequence derived from alignment at sc0000091:582899..584913 (Clytia hemisphaerica)
TTAATTCAAGCCAACAGCACCTCTCAATCGCGTGATTAGAGTAGGTTGTG
CTCGCACAATCAAAACATAGTCAGAGGGTGTATCTAATAAAACAGTCCGT
TCTTTTATTTCAGAGTTTTTACTagacaatttcattttgacaGGCATATC
AAAACCACAAATGCATTGGATCGTTCCATTTTGGTTAGTGATTCGAGCCA
TGGCTTCGTGTACCGTTTCATGATTCGAAATAATTGACTGTTCATCGATT
ATGTCAGGTTTCTTACATTTAACACATTCTACCAAAATGCGGAGTTTTAT
GGTCCTGTGAGCAATAAAACTGGGCGAAAATTCGAATAGGCGCCGTTGGT
CTTTGTGCATTGAGAACCAACCCTGTTCTTGTTGGTACAATGAAATACTG
CACCCTGTCATATTTGATAACGTTTCCTCTAGATCTCCAATAGTTAAGGT
TTCTTTAACTGTGATAGTACCCGGTAACCCTATTCGTTCTCCATAAGGGC
ATTTCAAGGACACGGTGATATCTTTGGGTTCAAGAATGATTAGATTAAGG
TACAAACATTTCTTTGATCTCTCTTCTTCActtgaaaaatgattgaaaac
atCAATGAGAAGTTCATCCTTGGTTATCTCCCTGTTTCCATGCATGTATA
TTTGACCATGACTGGGAATGTTCCATTCTTGTCTAATATGATTTTTAACA
CCTTCAAGGGAAGCAAACTTTGAATCAATCTCGAGAACTCTCGTAAGTGA
TTTGATAACCAAAGTTTTTAAACCATTTACTTCGAACAAATGTTTCCTTA
GGCACTGGTCATCACTACATTCGACTGTACAAAGTAATTCAATGTCTTCC
TTGAAAACACCATTCGAATAAAACATATCTTCAGTATTATCTGTTCCCAA
ATATCTATCCATTCGAATgtcaatcaaaccaaaattcaaaGAGCGAAGAT
AGTTGGTTAAAATGTTTGGTATATCTTTGATCTTAAGGGTAGGATTTTGA
ACAAGATCCAATATGTTTTCAACAATAATTAAATTTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009332-exon-sc0000091-1491911889:582899..584913 | TCONS_00009332-exon-sc0000091-1491911889:582899..584913 | Clytia hemisphaerica | exon |
| TCONS_00009332-exon-sc0000091-1510915933:582899..584913 | TCONS_00009332-exon-sc0000091-1510915933:582899..584913 | Clytia hemisphaerica | exon |
| TCONS_00009332-exon-sc0000091-1575043694:582899..584913 | TCONS_00009332-exon-sc0000091-1575043694:582899..584913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:582899..584913 . |
Blast
The following BLAST results are available for this feature:
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