TCONS_00009329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009329
Unique NameTCONS_00009329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009329 ID=TCONS_00009329|Name=TCONS_00009329|organism=Clytia hemisphaerica|type=transcript|length=469bp
GGTACTTCATAGACGCCTAGTAAACAATAAGTGCAGAATTGAGAAACCTT
GAGGTTCAAATCGTATAAATTAAATACATAAAATTGCTATTGCTCTTTCC
CTGATATGTATTACTCGATAAAACCTATAATattgtttttgtataaaaat
aactaaaaacaTCTAGTAAAAACTATAGCAATTCAGATATTAATCATTTG
CACAACAAAAATTGATTGCTCGTAAACCAGACCAGACAACTCTATTTAAT
AAACTAAGACATAATTAATTATTTTGCAGTAAAAAAGAGCCtaattaaga
caaaaaaacgTCTCGAGTCCTCTATTGTGTAAAGAAAATTACACACAATG
GCGTAAATTGATTATACACGTCATATAGTAATACAGCTTTTTACTCGTAT
GAATGTGCATTACAggctttttcatttcaattagATGAATTTGTATGACA
CCAACTTTCTAGAGGTCAT
Run BLAST on NCBI

transcript from alignment at sc0000091:497899..498367

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009329 ID=TCONS_00009329|Name=TCONS_00009329|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at sc0000091:497899..498367 (Clytia hemisphaerica)
ATGACCTCTAGAAAGTTGGTGTCATACAAATTCATctaattgaaatgaaa
aagccTGTAATGCACATTCATACGAGTAAAAAGCTGTATTACTATATGAC
GTGTATAATCAATTTACGCCATTGTGTGTAATTTTCTTTACACAATAGAG
GACTCGAGAcgtttttttgtcttaattaGGCTCTTTTTTACTGCAAAATA
ATTAATTATGTCTTAGTTTATTAAATAGAGTTGTCTGGTCTGGTTTACGA
GCAATCAATTTTTGTTGTGCAAATGATTAATATCTGAATTGCTATAGTTT
TTACTAGAtgtttttagttatttttatacaaaaacaatATTATAGGTTTT
ATCGAGTAATACATATCAGGGAAAGAGCAATAGCAATTTTATGTATTTAA
TTTATACGATTTGAACCTCAAGGTTTCTCAATTCTGCACTTATTGTTTAC
TAGGCGTCTATGAAGTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005221XLOC_005221Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009329-exon-sc0000091-1491911889:497899..498367TCONS_00009329-exon-sc0000091-1491911889:497899..498367Clytia hemisphaericaexon
TCONS_00009329-exon-sc0000091-1510915933:497899..498367TCONS_00009329-exon-sc0000091-1510915933:497899..498367Clytia hemisphaericaexon
TCONS_00009329-exon-sc0000091-1575043694:497899..498367TCONS_00009329-exon-sc0000091-1575043694:497899..498367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:497899..498367 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.409359	0.133063	0	0	0.368029	0.290821	0	0	0	0.427287	0	0.181754	0.544503	1.22519	0.774824	0.997806	0.204869	3.25476	1.01537	0.455361	0.395791	0.386106	0.782271	0	0	0	2.80656	0.399365	0.454356	0.308611
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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