TCONS_00009328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009328
Unique NameTCONS_00009328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009328 ID=TCONS_00009328|Name=TCONS_00009328|organism=Clytia hemisphaerica|type=transcript|length=782bp
cccccccccccccaagattTATTTCCCTCAACAAAAACTGTCAGTACGTG
AAACGTTTTCGCCAAAACCAACCATTGTTAGTTCCAGTAAAGAAAACGCA
ATCACGTCATTTAGCGACGTGATAAAACAACTTTATACTTAGTTGCTGGT
TCATAAGTTGCTCCTAATATTCCATCTTGCATTCCAGGAAGTGGATCTCC
AAGAGGtagtgaaatttcaaaatttcgcaTAAGATTGGTTAGtgatgaaa
aaagttgaaattctgcTAATTTTTGACCAATGCAAACACGAGTACCAGCA
CCAAAGGGTAGATAATGAGTAgcctttttctctttgtttacaATTCCATC
AGCATTCAACCAACGTTCTGGTTTGAACTTCTCTGGTTCATCCCAGTGTG
TAGGATCGTGATTACAATTGtagaaattgagaaaaactTTGGATCCCTTG
GGGATGGGGTGGCCACCAACGGACGTATCCACTATAGCTTTATGTGGGAT
GCCGAATGGTGCTGCTGAGGCATATCGGTTGGTTTCAAGTACTGTGGCAT
GGACAAAAGGCAAGAGATTGATATCTTCAGGTTTGATTGAACGTTTTGCG
CCAATTTTGGTGAGAATCTCTTGGTGGATTTTAGTTTGGTACTCAGGGTA
ATTCAAGAGATAAATGGCCAACCAGCGGAGAGTGGTGTAGTTGGTTTCCA
TTCCAGCAAAAGAAATTGTATTCCAATTGCATTTGAGTGACTTTCTCGAA
GCCAGCATCTTTCCATAACTCTTTGTTTTGTg
Run BLAST on NCBI

protein sequence of TCONS_00009328-protein

>TCONS_00009328-protein ID=TCONS_00009328-protein|Name=TCONS_00009328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
HKTKSYGKMLASRKSLKCNWNTISFAGMETNYTTLRWLAIYLLNYPEYQT
KIHQEILTKIGAKRSIKPEDINLLPFVHATVLETNRYASAAPFGIPHKAI
VDTSVGGHPIPKGSKVFLNFYNCNHDPTHWDEPEKFKPERWLNADGIVNK
EKKATHYLPFGAGTRVCIGQKLAEFQLFSSLTNLMRNFEISLPLGDPLPG
MQDGILGATYEPATKYKVVLSRR
Run BLAST on NCBI

transcript from alignment at sc0000091:497023..497804

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009328 ID=TCONS_00009328|Name=TCONS_00009328|organism=Clytia hemisphaerica|type=transcript|length=782bp|location=Sequence derived from alignment at sc0000091:497023..497804 (Clytia hemisphaerica)
cACAAAACAAAGAGTTATGGAAAGATGCTGGCTTCGAGAAAGTCACTCAA
ATGCAATTGGAATACAATTTCTTTTGCTGGAATGGAAACCAACTACACCA
CTCTCCGCTGGTTGGCCATTTATCTCTTGAATTACCCTGAGTACCAAACT
AAAATCCACCAAGAGATTCTCACCAAAATTGGCGCAAAACGTTCAATCAA
ACCTGAAGATATCAATCTCTTGCCTTTTGTCCATGCCACAGTACTTGAAA
CCAACCGATATGCCTCAGCAGCACCATTCGGCATCCCACATAAAGCTATA
GTGGATACGTCCGTTGGTGGCCACCCCATCCCCAAGGGATCCAAagtttt
tctcaatttctaCAATTGTAATCACGATCCTACACACTGGGATGAACCAG
AGAAGTTCAAACCAGAACGTTGGTTGAATGCTGATGGAATtgtaaacaaa
gagaaaaaggcTACTCATTATCTACCCTTTGGTGCTGGTACTCGTGTTTG
CATTGGTCAAAAATTAgcagaatttcaacttttttcatcaCTAACCAATC
TTAtgcgaaattttgaaatttcactaCCTCTTGGAGATCCACTTCCTGGA
ATGCAAGATGGAATATTAGGAGCAACTTATGAACCAGCAACTAAGTATAA
AGTTGTTTTATCACGTCGCTAAATGACGTGATTGCGTTTTCTTTACTGGA
ACTAACAATGGTTGGTTTTGGCGAAAACGTTTCACGTACTGACAGTTTTT
GTTGAGGGAAATAaatcttggggggggggggg

Coding sequence (CDS) from alignment at sc0000091:497023..497804

>TCONS_00009328 ID=TCONS_00009328|Name=TCONS_00009328|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0000091:497023..497804 (Clytia hemisphaerica)
cACAAAACAAAGAGTTATGGAAAGATGCTGGCTTCGAGAAAGTCACTCAA
ATGCAATTGGAATACAATTTCTTTTGCTGGAATGGAAACCAACTACACCA
CTCTCCGCTGGTTGGCCATTTATCTCTTGAATTACCCTGAGTACCAAACT
AAAATCCACCAAGAGATTCTCACCAAAATTGGCGCAAAACGTTCAATCAA
ACCTGAAGATATCAATCTCTTGCCTTTTGTCCATGCCACAGTACTTGAAA
CCAACCGATATGCCTCAGCAGCACCATTCGGCATCCCACATAAAGCTATA
GTGGATACGTCCGTTGGTGGCCACCCCATCCCCAAGGGATCCAAagtttt
tctcaatttctaCAATTGTAATCACGATCCTACACACTGGGATGAACCAG
AGAAGTTCAAACCAGAACGTTGGTTGAATGCTGATGGAATtgtaaacaaa
gagaaaaaggcTACTCATTATCTACCCTTTGGTGCTGGTACTCGTGTTTG
CATTGGTCAAAAATTAgcagaatttcaacttttttcatcaCTAACCAATC
TTAtgcgaaattttgaaatttcactaCCTCTTGGAGATCCACTTCCTGGA
ATGCAAGATGGAATATTAGGAGCAACTTATGAACCAGCAACTAAGTATAA
AGTTGTTTTATCACGTCGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005220XLOC_005220Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009328-exon-sc0000091-1491911889:497023..497804TCONS_00009328-exon-sc0000091-1491911889:497023..497804Clytia hemisphaericaexon
TCONS_00009328-exon-sc0000091-1510915933:497023..497804TCONS_00009328-exon-sc0000091-1510915933:497023..497804Clytia hemisphaericaexon
TCONS_00009328-exon-sc0000091-1575043694:497023..497804TCONS_00009328-exon-sc0000091-1575043694:497023..497804Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009328-proteinTCONS_00009328-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:497023..497804 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60981	1.75095	0.701042	0.068586	2.6719	2.44127	0.875628	1.41594	0.365227	0.51702	0.752748	0.618533	2.38834	3.16454	5.90651	11.1083	6.11148	33.0914	6.51597	2.89269	1.29096	0.788384	0.780906	1.78205	0.0664762	0.0593284	4.16436	0.472901	0.618495	0.770182
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001128Cyt_P450
IPR002401Cyt_P450_E_grp-I
IPR017972Cyt_P450_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
[Close]
BLAST of TCONS_00009328 vs. Swiss-Prot (Human)
Match: CP1A2 (Cytochrome P450 1A2 OS=Homo sapiens GN=CYP1A2 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 6.577e-39
Identity = 72/175 (41.14%), Postives = 105/175 (60.00%), Query Frame = -1 
Query:  198 NTISFAGMETNYTTLRWLAIYLLNYPEYQTKIHQEILTKIGAKRSIKPEDINLLPFVHATVLETNRYASAAPFGIPHKAIVDTSVGGHPIPKGSKVFLNFYNCNHDPTHWDEPEKFKPERWLNADGIVNKEKKATHYLPFGAGTRVCIGQKLAEFQLFSSLTNLMRNFEISLPLG 722
            N I  AG +T  T + W  +YL+  PE Q KI +E+ T IG +R  +  D   LP++ A +LET R++S  PF IPH    DT++ G  IPK   VF+N +  NHDP  W++P +F+PER+L ADG    +  +   + FG G R CIG+ LA++++F  L  L++  E S+P G
Sbjct:  312 NDIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKELDTVIGRERRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGEVLAKWEIFLFLAILLQQLEFSVPPG 486
The following BLAST results are available for this feature:
BLAST of TCONS_00009328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP1A26.577e-3941.14Cytochrome P450 1A2 OS=Homo sapiens GN=CYP1A2 PE=1... [more]
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