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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009290 ID=TCONS_00009290|Name=TCONS_00009290|organism=Clytia hemisphaerica|type=transcript|length=962bp
ttttggaaaacctTTTTACAAAAGATGGAGATTTCGTACAAGAGAGCAAG
TTTTTCGTCTCAATCATCCGGTAGCAGTCAGGAAGAATTCGTTCAAATAA
GACCGAGTCATCGAGACAACGAAAACGCCGGATTTCTTATCCAACCGAAT
CGGAAAAATGGATTGAAAGTGCATTTAACTTTATTCCATTGCTTGAATCT
ACTGTTATGTTTGGTCCTTAGTCCAAGTACTTTTGCGTCATGTCTTATTT
ACAAGCATGTTCAAGACCCTGGAATAATTTTAGTATTATGGACAACTTGC
GGTGCTTTTGTATTATGTTATGCTTTAGTATGGGTTGAACTTGGTACGAT
GTTCCCTCGCGAGGCAGGTGGAGAATACACGTACCTCAAAAACGCATTCG
GACCTTTACCCGCGTTTGTATATAGCATGTTGCGCGTTTTGATTCTGCAA
CCCGCGAGATTGACTTTGATCTGTTTGGCGAGTGGAGATTTTCTATTGAG
AACGTTTTCTGCTCAAATTGAGAATGttgaaattgctcaaaaatttatcG
CTGCTGCATTCATTGcggTGATTCTGATCGTGAATTGTTTGAGTGTGAAA
TGGGCCACCCTGATGCAAGTCTTCTTTACGGCAGCCAAAATGATCGCTAT
CGTCATGCTTATCATTACAGGATTCGTTCGTCTCGGTCAAGGTCATGACG
AGCATTTTAAAAACGCCTTCAACGGGACAAATACCGGTATATCAGACATC
GGTTACGCGTTTTACGGTGGTCTATGGGCTTACGATGGTTGGAATAATTT
GAATTACGTCAccgaagaattgaaaaatcctATCCGTGATTTACCGTTAG
CCATTATGATTGGTATTCCCTTGGTAACGGGTTGCTATGTGATGGTGAAT
GTAGCATATTTGACGGTGATGTCCGCTTCACAGATTGCAACTGAAAAAGC
AGTAGCTGTGGT Run BLAST on NCBI transcript from alignment at sc0000091:552803..554786- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009290 ID=TCONS_00009290|Name=TCONS_00009290|organism=Clytia hemisphaerica|type=transcript|length=1984bp|location=Sequence derived from alignment at sc0000091:552803..554786- (Clytia hemisphaerica)
TTTTGGAAAACCTTTTTACAAAAGATGGAGATTTCGTACAAGAGAGCAAG
TTTTTCGTCTCAATCATCCGGTAGCAGTCAGGAAGAATTCGTTCAAATAA
GACCGAGTCATCGAGACAACGAAAACGCCGGATTTCTTATCCAACCGAAT
CGGAAAAATGGATTGAAAGTGCATTTAACTTTATTCCATTGCTTGAATCT
ACTGTTATGTTTGGTCCTTAGTCCAAGTACTTTTGCGTCATGTCTTATTT
ACAAGCATGTTCAAGACCCTGGAATAATTTTAGTATTATGGACAACTTGC
GGTGCTTTTGTATTATGTTATGCTTTAGTATGGGTTGAACTTGGTACGAT
GTTCCCTCGCGAGGCAGGTGGAGAATACACGTACCTCAAAAACGCATTCG
GACCTTTACCCGCGTTTGTATATAGCATGTTGCGCGTTTTGATTCTGCAA
CCCGCGAGATTGACTTTGATCTGTTTGGCGAGTGGAGATTTTCTATTGAG
AACGTTTTCTGCTCAAATTGAGAATGTTGAAATTGCTCAAAAATTTATCG
CTGCTGCATTCATTGGTTTGTTTTCAAAGTCTTTTAATTTTGATGTTTGA
AACATCACCCTCTATTTCATCCAGTCTAGGTTTCAAAGCACCAGGTTATA
TTGATATCAAAAGTTTGAAGCTACACGTTTATTTTAGTTTTCGAACTAAA
TGTGTGTGGTCTTAAATTTAGATCTTGTCACAAGGTTGAATAGGGTGTTT
TATGACCGTCTGATACCTCTGACCTCTTTGAAATATATATCCTTACTTGT
ATCAAATTCAGACTAGCCTGGTTTTATCCTTTTATCTCTGATATATGTAT
TTTCGTTCTGCAAAGAAATTAACTGTCTATCTATTTGTGCGAAGTGTCAA
ATATTTGTTAAGTCTTTAAACTAGACAAATAAGTTAAAGTTCTAGTTGGT
AAGAGAGTGCTGGTTTGGGTGGTCTCATTCCCTCGCGCCGACAATTTTTC
TTCCTTACACTTACCTTATTCATACGCTTACTTTTCCCGCGTGATATTGT
TCCAGTCCGACTGACGTGCCAGTCGATGCCAAAACGATGTTTTTCTTCTT
TTTTTTTCAGCGGTGATTCTGATCGTGAATTGTTTGAGTGTGAAATGGGC
CACCCTGATGCAAGTCTTCTTTACGGCAGCCAAAATGATCGCTATCGTCA
TGCTTATCATTACAGGATTCGTTCGTCTCGGTCAAGGTAGGTTTTCATTT
GACTTGAAGCTTATTTACGCTCTTTACGATAGAATGCTTTCCTACTATGC
TATCTGAAATCTAATCATAAAAGTTTATAAAAGACTAACTCTTTGTCGAT
ATTGACGTTGAAAGCCTTGGCGGAAGAAAATGAATGATCTCCATAGTTGG
GAATGTGGACAGAAGCCTTTCAATGTTTGTTTTTTTTCACCACTATTTTC
ACTAGAATTTCAACCTTTTATGATATATGGGCGATGTTTTGGTCCATTTA
GATATTGAAAGCCTGCGTGGATGGCTGGGGTAGGTATTGATAAAAAACGA
CCCTTGTAAAAAGACACTACACCTTTAAAGCTGATTCACCGTCCCTGGCT
AGTCATATCACATAATTTATTGAGGGCGAAAATAATAATTTAGTATCACT
TTTCTCCACCTTGTTGTCTTTTGAACAATATATTTGACCGATTCTGTCTC
TGTCTTTTTTCAGGTCATGACGAGCATTTTAAAAACGCCTTCAACGGGAC
AAATACCGGTATATCAGACATCGGTTACGCGTTTTACGGTGGTCTATGGG
CTTACGATGGTTGGAATAATTTGAATTACGTCACCGAAGAATTGAAAAAT
CCTATCCGTGATTTACCGTTAGCCATTATGATTGGTATTCCCTTGGTAAC
GGGTTGCTATGTGATGGTGAATGTAGCATATTTGACGGTGATGTCCGCTT
CACAGATTGCAACTGAAAAAGCAGTAGCTGTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009290-exon-sc0000091-1575043694:554222..554786 | TCONS_00009290-exon-sc0000091-1575043694:554222..554786 | Clytia hemisphaerica | exon |
| TCONS_00009290-exon-sc0000091-1575043694:553551..553676 | TCONS_00009290-exon-sc0000091-1575043694:553551..553676 | Clytia hemisphaerica | exon |
| TCONS_00009290-exon-sc0000091-1575043694:552803..553073 | TCONS_00009290-exon-sc0000091-1575043694:552803..553073 | Clytia hemisphaerica | exon |
| TCONS_00009290-exon-sc0000091-1510915933:554222..554786 | TCONS_00009290-exon-sc0000091-1510915933:554222..554786 | Clytia hemisphaerica | exon |
| TCONS_00009290-exon-sc0000091-1510915933:553551..553676 | TCONS_00009290-exon-sc0000091-1510915933:553551..553676 | Clytia hemisphaerica | exon |
| TCONS_00009290-exon-sc0000091-1510915933:552803..553073 | TCONS_00009290-exon-sc0000091-1510915933:552803..553073 | Clytia hemisphaerica | exon |
| TCONS_00009290-exon-sc0000091-1491911889:554222..554786 | TCONS_00009290-exon-sc0000091-1491911889:554222..554786 | Clytia hemisphaerica | exon |
| TCONS_00009290-exon-sc0000091-1491911889:553551..553676 | TCONS_00009290-exon-sc0000091-1491911889:553551..553676 | Clytia hemisphaerica | exon |
| TCONS_00009290-exon-sc0000091-1491911889:552803..553073 | TCONS_00009290-exon-sc0000091-1491911889:552803..553073 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:552803..554786 - |
Blast
BLAST of TCONS_00009290 vs. Swiss-Prot (Human)
Match: BAT1 (b(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 7.176e-63 Identity = 106/238 (44.54%), Postives = 159/238 (66.81%), Query Frame = 1
Query: 247 IYKHVQDPGIILVLWTTCGAFVLCYALVWVELGTMFPREAGGEYTYLKNAFGPLPAFVYSMLRVLILQPARLTLICLASGDFLLRTFSAQIENVEXXXXXXXXXXXXXXXXXNCLSVKWATLMQVFFTAAKMIAIVMLIITGFVRLGQGHDEHFKNAFNGTNTGISDIGYAFYGGLWAYDGWNNLNYVTEELKNPIRDLPLAIMIGIPLVTGCYVMVNVAYLTVMSASQIATEKAVAV 960
+ + + G L++W CG AL + ELGTM + +GGEY YL A+GP+PA+++S +++++P +ICL+ +++ F + +I K +AAA I I VN LSV+ + +Q FTAAK++ + ++II+G V L QG+ ++F N+F G + I AFY GLWAYDGWN LNY+TEEL+NP R+LPLAI+IGIPLVT CY+++NV+Y TVM+A+++ +AVAV
Sbjct: 55 VLSNTEAVGPCLIIWAACGVLATLGALCFAELGTMITK-SGGEYPYLMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPPQIVVKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQSQAVAV 291
The following BLAST results are available for this feature:
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