TCONS_00009283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009283
Unique NameTCONS_00009283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009283 ID=TCONS_00009283|Name=TCONS_00009283|organism=Clytia hemisphaerica|type=transcript|length=2521bp
cgcaCGCGTCAGCAGGGTCCTCCAGAATGTGCTAAATTTTCAAGGGCAGG
GAGGAGGGGTAAAGTTTTGCCAATATTTTTAGGTGCAAAATCACTGAAAA
TCAGCCTATTTCACCACTTTTTCACCTGGCTTTTTAGCAGCTTTTCTGAA
AGAGTATACAAAGTTTAGGGGCAGATTTCTGATATTCTAATTTTTCCTTG
GACTTGGAGGCAGCCCCTGACATGTTCTTAAAACTGGGCTTCGGCAGACA
AAAAACTGCACAGCTGTACACACAGATACATTGTTTTAGTTCATAAAAGA
TGAAATACAGACCCTTGCTGATGACCTGAGCTGAGTGCTTATCAGTTTTG
GTTCTATAGTTTGTCATTTTAATCTGTAATATCACACGTTTAGTTTCTTT
CACATCTCTAAACCACAGATTTATATACGAGAAGCGTCTTTTTTCTTCTC
TATGAAAAAATGATAAGCGCCGTTCAATAGATGGGAAACAAAATACATTT
CAAATTTGTTCCATTTTAGCCCCCGCTCCTTTAGCTGCCATTTCTCCTCT
CAGCCTGGTCGATCCTACTCTATTTTAGTTTGATCGTTTAGCTTTATGAA
TGTTTTTTATGGTGCCCGCCCTGCCAGGTTAGTGGTTACAGGCTCTTCTT
TGCTTGACCTGCATAAGCATGGAGTCATTACAGGACGCACAACCACAACC
TTCAGGACCAGCAGAAGAGTCACAAGCTCCGAAAGCACAAGGATTAAGCA
CGATATCCAATTCAGATGATCCTACCTCTAATGTCATTGATTACATCCAG
AAGCAAGTTGAATCTGCAGTTtatgaaataaacaaaatcacTGGCGTAAA
AACTGAGAATGATGTCGTTTTCTACAACGTTCAATGGGTGGCACACACAT
GGATTCCTGAATCAATCCTCTCACAGTTTAATCATTTCATTGAGCGTTTC
TGGCAAGAAAATGGTGGCAGAGAAAAGTTCatcaaaagtcaaaaagaacC
GATTCTAGTTACAGAACATGTAATAGAAGAAGGTCAAAATGGTCAGCAAA
AAGATGAATCGGACCCCTCCATTCAAGAACATGATCTGGGTGTCAGCAAC
GCAGAAGAACATTTCGAAACAACTTGCTCAAAATGCGATCaagtatttta
tttgaaaagtaaTTGGGATCTTCATATAATGTTTTGTGGGAAAGAAACAC
GCCAGGAGATGACCATTTCTGATGCAACTAGCAACAGTCAATTAGATTCC
GAAACAGTGTCAGCTGTTAGTACCATCAGCGAAGCTCCACCAAAAGCTGT
GGCTCGTTCTTTCGAATTGATTCCACTAGTGGAGCCTGCAGATTGTGAAT
CCTGCACCAAAAGAATGCCAACCATCCATTCTGCGGCTGGTGGTAATATC
gataatgaaaaattattgtTCAATGCCACAAAGAAATCCATTAGTGAGGA
TGTAGAAATTTTCGAATGTCAAGAATGCAAACGTGATTTCCTCTGTAAGC
ACCCCGTTGATGAGAATTTAGTACTGGCGTCCGCCCTCCAAGCTAACGAT
ACGGTCGCCGCTGACGCCATCTTCAACAAAAAGTTCAGACCCTATTCTTG
TCCGATCTGCAATCGATCTTTTGAATCTGCCAATGAGATGTACCAGCATG
AAGTGAAACATTCCAACACAAACCGTCGGTATTCGTGTGCTAAGTGTCAC
ATGAAATTTGTCACTCGAAGCTCACTACAAGAGCATTATAATACTTCTAA
GAATGGCTGTGCTCCGAAGAAATGCCAACTTTGCTCCAAGGAGTTCGTTC
ACGCAAGTCATTTGAAAAGGCACATGACAAACGTTCATATAGGTGTGAAA
CCGTTTGGTTGTGACATTTGTTCACACGAGTTCAGTCAGAAAAGTGATCT
TCAACGACATGAGAAAAGGCATAAGATTGAAGGACGTTATACATGTGTGA
AATGCTGGCTGATGTATGATACTATTGAAGAGCTACGAGAACATTGTAAC
GAGAGACACCAGAAAGGTTCTAAAAAAGCCCCTGCTCCCGAGCAAACATT
TAAATGCGAGATGTGCCCGAAAAGTTTCAAAAGGAAATCACATTACACGA
GACATTTGACTATTCACTCGGGAATTAAACCTCACTCTTGTGAGCATTGC
GGGAAATCTTTCAATCAGAAATCTGACTTGAAGCGCCATGTACAAACACA
TGAACGAAGGAAGGAAAAAGATGGCATTCCACAACAAGATTTTGAGATGG
ATGACGGAACTGAAGGGGAAGGAGAACCTCCATTCATTTGTAGTATTTGC
TCTCGATCGTTTAATCAAAAACTTCTCCTTGACTCACATATGACGGTCAC
ACATGAAAGAATGATGGGCGCCGGCGTTTCtttcttgaaataaaatttca
ataatcTTTGAATTTGTAAACTTTATTCATATTTAGCGTCAGCTCGTACT
CCAAAAAAATATCTGAATTTAAATATAATGCAAGACATCGTCCGTTTTtt
atattctcaacttcagttgag
Run BLAST on NCBI

transcript from alignment at sc0000091:344005..349645-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009283 ID=TCONS_00009283|Name=TCONS_00009283|organism=Clytia hemisphaerica|type=transcript|length=5641bp|location=Sequence derived from alignment at sc0000091:344005..349645- (Clytia hemisphaerica)
CGCACGCGTCAGCAGGGTCCTCCAGAATGTGCTAAATTTTCAAGGGCAGG GAGGAGGGGTAAAGTTTTGCCAATATTTTTAGGTGCAAAATCACTGAAAA TCAGCCTATTTCACCACTTTTTCACCTGGCTTTTTAGCAGCTTTTCTGAA AGAGTATACAAAGTTTAGGGGCAGATTTCTGATATTCTAATTTTTCCTTG GACTTGGAGGCAGCCCCTGACATGTTCTTAAAACTGGGCTTCGGCAGACA AAAAACTGCACAGCTGTACACACAGATACATTGTTTTAGTTCATAAAAGA TGAAATACAGACCCTTGCTGATGACCTGAGCTGAGTGCTTATCAGTTTTG GTTCTATAGTTTGTCATTTTAATCTGTAATATCACACGTTTAGTTTCTTT CACATCTCTAAACCACAGATTTATATACGAGAAGCGTCTTTTTTCTTCTC TATGAAAAAATGATAAGCGCCGTTCAATAGATGGGAAACAAAATACATTT CAAATTTGTTCCATTTTAGCCCCCGCTCCTTTAGCTGCCATTTCTCCTCT CAGCCTGGTCGATCCTACTCTATTTTAGTTTGATCGTTTAGCTTTATGAA TGTTTTTTATGGTGCCCGCCCTGCCAGGTTAGTGGTTACAGGCTCTTCTT TGCTTGACCTGCATAAGCATGGAGTCATTACAGGACGCACAACCACAACC TTCAGGACCAGCAGAAGAGTCACAAGCTCCGAAAGCACAAGGATTAAGCA CGATATCCAATTCAGATGATCCTACCTCTAATGTCATTGATTACATCCAG AAGCAAGTTGAATCTGCAGTTTATGAAATAAACAAAATCACTGGCGTAAA AACTGAGGTATAGCTAAACCCAATAAACTTGAATCCATTTTTCCTGGATG CAAAGGACAGTGCCAGTGCCAGTTTTAGATGGGTGTTGCTAAACTTGAGA TTGTGCATTATGTGGAACAGTGAAGTTAGCTAGCTGGGTACGGTATTATG CGGGTGGTGACAAATCAAAATACAGATTTATAATAATTTCATTATTTCTG ATTTCTCACAAATCTGCCAGTCAGCTTTTTTTGGACCTACCTCAGTCAGA GGGTTGGCAGACGATATCATACTCCAGGGTGCAAGTGAAATTTTTCAATC CGCGGACCTAGACGGGGGTTCGGTTATTATCAGTTAGGGTTAGGGTTGGA GCTCGAGAGTCACAATATAAGGCCGAAGGCCTNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGATCCTGTAGGG ATCCTTGTAGGGGCACCGGTAGGGTTGGGAGCTTTCTTAATTAAGGTCTG TAAATTACACGCTATAAGTATTTGTGAATGACGGCTCTCTGTCGTGTCTC GTTGGCGTAAGCGGTTAGGCATTGGGTTTGTAAACCAAGGTTGCTTGCAT TTGGTGGTTCGAGCCGGGGTCGGAGACCTGTTTCACCGGTATTGGCAAAT TTCAGAAAAATACTTAGAAAACAGTTAGAAACACTTGAGAAAGACAGAAA ATCAGGATAGAAGATAGGAAAGTAGAAAAAAGGGAGAAAATAAGAAACGA TGCATCCTGGAGTATGATATCGTTTGCCAAACACCTCAGAAGTCCCTTTA ATTTAACCTTTGTTTGTCTGTTCGTTCGTCCATTCGTCTGTTACCGTGAA GTCGGGTAACTTGCATATATCAGTGGAGGGAAACTTGCATAGCCATATCA AATGACTGACCAATCAAAGCAGCAAAATTTCAAAACAAATGAACTACGCA GCTCCGCTCACAGCTCTACTCTACCACCATTTTTGTTTTGACTTAACTTT GTATTTTAGTCACCAGCCAGGTCATTCATTTGAGGGCTATGCATGTTAAC CTAAGAATAAAATAGTAAAATGGCTCTTAGCAGGGATTTAATTTCCATAA TGGTGGACATAGAGGCATCCCAGACCCAAATAATTTTGATTTCCCTGGAG TATCTCCAGATGGTCCAGAATACCATCACTGCAAAAAGAATTTTAGTCAC CATTTGCATAAGCTCATTTTTGTAGAAGTTTGCCTTAAAAAACTGCTATG TTTTTATTAAAGATGATTTTTTTTTGCTTAAAAGAGATTTTTGAACATGC CATTTTGAATTTTTGAAAAAAGTGGAAAAATTGAAAAATTTATTTTGCTT ATTAAGACTTTGATTGAAGACTTCCATATATCTGAAAATTTTAGACATGT GAGTTTTAAATCAGTTTAAAAGTTATGAACTTGCAAGATTGACCTTTTTG CTACCCAAGATTGTCTTAAAACGACTCATTTAGGGCTCAAACGGGCACAA TTTTGAACTGAATATGATTATTTTGTTGTTTCTTCATAAAATCTAGTATA TACAACAAATGAAAAAAAAATAGATTTGCAATAATTTTGACATATTAATA ACAGGCCTGAAAAGGCCAAAAAATGCCATTATTTCTAATTTTGCCTATAG TGCAAATCAGGGGGGGGGGTTCTCTTCTGAACTTAAAAATTGTGCAGAAT GCCTCCTGTCTACCCTTTACAATGACTTTTTAAAAAGTCTAGAATTGATT AATGTAACAGTACAGTAGTATGCGAGTGCAAAGGTGTAAAGAAAGTAATC TTTGACGGAAGAAACGTTTTCCATTTTTTAGAATGATGTCGTTTTCTACA ACGTTCAATGGGTGGCACACACATGGATTCCTGAATCAATCCTCTCACAG TTTAATCATTTCATTGAGCGTTTCTGGCAAGAAAATGGTGGCAGAGAAAA GTTCATCAAAAGTCAAAAAGAACCGATTCTAGTTGTAAGAATTTGAGATT CGATTCACATTCAACATCATTTAAAACAGATGAAAATGAGTATGCTTTTT CGTTAAAGCTTTGAACAATTTTAAAATTCACTTACATGTACATGAAGTTG TGATATTAATGATATTGATAGATGTTGTTTTTTAGAAAGATTGACTTTTT TCTCTTTAAGACAGAACATGTAATAGAAGAAGGTCAAAATGGTCAGCAAA AAGATGAATCGGACCCCTCCATTCAAGAACATGATCTGGGTAAGGTGTTT AGAATTGCTAAAAAGTTGCTTTCGAAAAGNNNNNNNNNNNNNNNNNNNNN NNNACAGTAGTATGCGAGTGGAAAGGTGTAAAGAAAGTAATCTTTGACGG AAGAAACGTTTTCCATTTTTTAGAATGATGTCGTTTTCTACAACGTTCAA TGGGTGGCACACACATGGATTCCTGAATCAATCCTCTCACAGTTTAATCA TTTCATTGAGCGTTTCTGGCAAGAAAATGGTGGCAGAGAAAAGTTCATCA AAAGTCAAAAAGAACCGATTCTAGTTGTAAGAATTTGAGATTCGATTCAC ATTCAACATCATTTAAAACAGATGAAAATGAGTATGCTTTTTCGTTAAAG CTTTGAACAATTTTAAAATTCACTTACATGTACATGAAGTTGTGATATTA ATGATATTGATAGATGTTTTTTTTAGAAAGATTGACTTTTTTCTCTTTAA GACAGAACATGTAATAGAAGAAGGTCAAAATGGTCAGCAAAAAGATGAAT CGGACCCCTCCATTCAAGAGCAAGATCTGGGTAAGGTGTTTAGAATTGCT AAAAAGTTGCTTTCGAAAAGTAACGTTCCATGTTAAAACAAGCTTGAATC TGTATCTGGGATAACTAGAAATGTTATCAATCCGAACTTTAAAGAGGAAA GAATAACTTAAATTTTGGCCTTTAATACATTAAATTTGATTCAGCCTGGT TCAGCCGCTCAAAAGTTATAAAAAAAGTACGAAGAGAGCGTGTTTTGTCG TGAGTTATTTTCTTGTTTTCGTTATAACTTTTGAACACACGAAGCAAATT AAATGGTATGCTAGCTCAAGATTAAGCTGGCCTCTCCTTTTTCCAATTTT GAAAAGTGTCGATTTATAAAATCTTTAGTTTTCTCAGAATCTCAATTCAA ATCTGTACACTTTTCAATGAAACACTCGGTATTATTTTTTATTTAGTTTT AGTTTTGAACCGGGACAATAATTTAATATATAAAGGATTGATTATTTCCT TATGTTTAGGTGTCAGCAACGCAGAAGAACATTTCGAAACAACTTGCTCA AAATGCGATCAAGTATTTTATTTGAAAAGTAATTGGGATCTTCATATAAT GTTTTGTGGGAAAGAAACACGCCAGGAGATGACCATTTCTGATGCAACTA GCAACAGTCAATTAGATTCCGAAACAGTGTCAGCTGTTAGTACCATCAGC GAAGCTCCACCAAAAGCTGTGGCTCGTTCTTTCGAATTGATTCCACTAGT GGAGCCTGCAGATTGTGAATCCTGCACCAAAAGAATGCCAACCATCCATT CTGCGGCTGGTGGTAATATCGATAATGAAAAATTATTGTTCAATGCCACA AAGAAATCCATTAGTGAGGATGTAGAAATTTTCGAATGTCAAGAATGCAA ACGTGATTTCCTCTGTAAGCACCCCGTTGATGAGAATTTAGTACTGGCGT CCGCCCTCCAAGCTAACGATACGGTCGCCGCTGACGCCATCTTCAACAAA AAGTTCAGACCCTATTCTTGTCCGATCTGCAATCGATCTTTTGAATCTGC CAATGAGATGTACCAGCATGAAGTGAAACATTCCAACACAAACCGTCGGT ATTCGTGTGCTAAGTGTCACATGAAATTTGTCACTCGAAGCTCACTACAA GAGCATTATAATACTTCTAAGAATGGCTGTGCTCCGAAGAAATGCCAACT TTGCTCCAAGGAGTTCGTTCACGCAAGTCATTTGAAAAGGCACATGACAA ACGTTCATATAGGTGTGAAACCGTTTGGTTGTGACATTTGTTCACACGAG TTCAGTCAGAAAAGTGATCTTCAACGACATGAGAAAAGGCATAAGATTGA AGGACGTTATACATGTGTGAAATGCTGGCTGATGTATGATACTATTGAAG AGCTACGAGAACATTGTAACGAGAGACACCAGAAAGGTTCTAAAAAAGCC CCTGCTCCCGAGCAAACATTTAAATGCGAGATGTGCCCGAAAAGTTTCAA AAGGAAATCACATTACACGAGACATTTGACTATTCACTCGGGAATTAAAC CTCACTCTTGTGAGCATTGCGGGAAATCTTTCAATCAGAAATCTGACTTG AAGCGCCATGTACAAACACATGAACGAAGGAAGGAAAAAGATGGCATTCC ACAACAAGATTTTGAGATGGATGACGGAACTGAAGGGGAAGGAGAACCTC CATTCATTTGTAGTATTTGCTCTCGATCGTTTAATCAAAAACTTCTCCTT GACTCACATATGACGGTCACACATGAAAGAATGATGGGCGCCGGCGTTTC TTTCTTGAAATAAAATTTCAATAATCTTTGAATTTGTAAACTTTATTCAT ATTTAGCGTCAGCTCGTACTCCAAAAAAATATCTGAATTTAAATATAATG CAAGACATCGTCCGTTTTTTATATTCTCAACTTCAGTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005192XLOC_005192Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009283-exon-sc0000091-1575043694:348789..349645TCONS_00009283-exon-sc0000091-1575043694:348789..349645Clytia hemisphaericaexon
TCONS_00009283-exon-sc0000091-1575043694:346712..346864TCONS_00009283-exon-sc0000091-1575043694:346712..346864Clytia hemisphaericaexon
TCONS_00009283-exon-sc0000091-1575043694:346457..346535TCONS_00009283-exon-sc0000091-1575043694:346457..346535Clytia hemisphaericaexon
TCONS_00009283-exon-sc0000091-1575043694:344005..345436TCONS_00009283-exon-sc0000091-1575043694:344005..345436Clytia hemisphaericaexon
TCONS_00009283-exon-sc0000091-1510915933:348789..349645TCONS_00009283-exon-sc0000091-1510915933:348789..349645Clytia hemisphaericaexon
TCONS_00009283-exon-sc0000091-1510915933:346712..346864TCONS_00009283-exon-sc0000091-1510915933:346712..346864Clytia hemisphaericaexon
TCONS_00009283-exon-sc0000091-1510915933:346457..346535TCONS_00009283-exon-sc0000091-1510915933:346457..346535Clytia hemisphaericaexon
TCONS_00009283-exon-sc0000091-1510915933:344005..345436TCONS_00009283-exon-sc0000091-1510915933:344005..345436Clytia hemisphaericaexon
TCONS_00009283-exon-sc0000091-1491911889:348789..349645TCONS_00009283-exon-sc0000091-1491911889:348789..349645Clytia hemisphaericaexon
TCONS_00009283-exon-sc0000091-1491911889:346712..346864TCONS_00009283-exon-sc0000091-1491911889:346712..346864Clytia hemisphaericaexon
TCONS_00009283-exon-sc0000091-1491911889:346457..346535TCONS_00009283-exon-sc0000091-1491911889:346457..346535Clytia hemisphaericaexon
TCONS_00009283-exon-sc0000091-1491911889:344005..345436TCONS_00009283-exon-sc0000091-1491911889:344005..345436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:344005..349645 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.7402 9.91948 2.19497 5.23058 27.4681 23.9183 24.0096 23.6041 11.7453 16.0812 18.2277 14.5837 17.431 19.9873 16.0352 17.974 10.6359 18.825 11.2188 11.5764 11.9575 10.6261 30.4305 27.5568 26.9042 27.0109 4.93151 7.39308 22.2971 23.2575
Blast
BLAST of TCONS_00009283 vs. Swiss-Prot (Human)
Match: ZN358 (Zinc finger protein 358 OS=Homo sapiens GN=ZNF358 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.789e-36
Identity = 105/395 (26.58%), Postives = 166/395 (42.03%), Query Frame = 3
Query: 1212 TISDATSNSQLDSETVSA-VSTISEAP------PKAVARSFEL-------IPLVEPADCESCTKRMPTIHSAAGGNIDNEKLLFN--ATKKSISEDVEIFECQECKRDFLCKHPVDENLVLASALQANDTVAADAIFNKKFRPYSCPICNRSFESANEMYQHEVKHSNTNRRYSCAKCHMKFVTRSSLQEHYNTSKNGCAPKKCQLCSKEFVHASHLKRHMTNVHIGVKPFGCDICSHEFSQKSDLQRHEKRHKIEGRYTCVKCWLMYDTIEELREHCNERHQKGSKKAPAPEQTFKCEMCPKSFKRKSHYTRHLTIHSGIKPHSCEHCGKSFNQKSDLKRHVQTHERRKEKDGIPQQDFEMDDGTEGEGEPPFICSICSRSFNQKLLLDSHMTV 2348
            T+ +    S  D E VS  +   +EAP      P  ++ SF+L       +PL+   + ++ +   P +   + G     ++L    A   + +     F C +C R F                + +  ++     +   +PY CP C +SF     + QH   H+   R Y CA C   F  RS+L +H  +S +G  P  C +C K F H S L +H+   H G +P  C +C+  F Q S L +H + H  E  Y C +C   +     L +H    H          E+ ++C  C K+F + S+   HL IH+G +P++C HC K+F Q S L +H+  H                       GE P+ C +C ++F Q   L  H  V
Sbjct:   52 TVPEDVDPSYEDLEPVSEDLDPDAEAPGSEPQDPDPMSSSFDLDPDVIGPVPLILDPNSDTLSPGDPKVDPISSGLTATPQVLATSPAVLPAPASPPRPFSCPDCGRAF----------------RRSSGLSQHRRTHSGEKPYRCPDCGKSFSHGATLAQHRGIHTGA-RPYQCAACGKAFGWRSTLLKH-RSSHSGEKPHHCPVCGKAFGHGSLLAQHL-RTHGGPRPHKCPVCAKGFGQGSALLKHLRTHTGERPYPCPQCGKAFGQSSALLQH-QRTHTA--------ERPYRCPHCGKAFGQSSNLQHHLRIHTGERPYACPHCSKAFGQSSALLQHLHVH----------------------SGERPYRCQLCGKAFGQASSLTKHKRV 396          
The following BLAST results are available for this feature:
BLAST of TCONS_00009283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN3584.789e-3626.58Zinc finger protein 358 OS=Homo sapiens GN=ZNF358 ... [more]
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