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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009283 ID=TCONS_00009283|Name=TCONS_00009283|organism=Clytia hemisphaerica|type=transcript|length=2521bp cgcaCGCGTCAGCAGGGTCCTCCAGAATGTGCTAAATTTTCAAGGGCAGG GAGGAGGGGTAAAGTTTTGCCAATATTTTTAGGTGCAAAATCACTGAAAA TCAGCCTATTTCACCACTTTTTCACCTGGCTTTTTAGCAGCTTTTCTGAA AGAGTATACAAAGTTTAGGGGCAGATTTCTGATATTCTAATTTTTCCTTG GACTTGGAGGCAGCCCCTGACATGTTCTTAAAACTGGGCTTCGGCAGACA AAAAACTGCACAGCTGTACACACAGATACATTGTTTTAGTTCATAAAAGA TGAAATACAGACCCTTGCTGATGACCTGAGCTGAGTGCTTATCAGTTTTG GTTCTATAGTTTGTCATTTTAATCTGTAATATCACACGTTTAGTTTCTTT CACATCTCTAAACCACAGATTTATATACGAGAAGCGTCTTTTTTCTTCTC TATGAAAAAATGATAAGCGCCGTTCAATAGATGGGAAACAAAATACATTT CAAATTTGTTCCATTTTAGCCCCCGCTCCTTTAGCTGCCATTTCTCCTCT CAGCCTGGTCGATCCTACTCTATTTTAGTTTGATCGTTTAGCTTTATGAA TGTTTTTTATGGTGCCCGCCCTGCCAGGTTAGTGGTTACAGGCTCTTCTT TGCTTGACCTGCATAAGCATGGAGTCATTACAGGACGCACAACCACAACC TTCAGGACCAGCAGAAGAGTCACAAGCTCCGAAAGCACAAGGATTAAGCA CGATATCCAATTCAGATGATCCTACCTCTAATGTCATTGATTACATCCAG AAGCAAGTTGAATCTGCAGTTtatgaaataaacaaaatcacTGGCGTAAA AACTGAGAATGATGTCGTTTTCTACAACGTTCAATGGGTGGCACACACAT GGATTCCTGAATCAATCCTCTCACAGTTTAATCATTTCATTGAGCGTTTC TGGCAAGAAAATGGTGGCAGAGAAAAGTTCatcaaaagtcaaaaagaacC GATTCTAGTTACAGAACATGTAATAGAAGAAGGTCAAAATGGTCAGCAAA AAGATGAATCGGACCCCTCCATTCAAGAACATGATCTGGGTGTCAGCAAC GCAGAAGAACATTTCGAAACAACTTGCTCAAAATGCGATCaagtatttta tttgaaaagtaaTTGGGATCTTCATATAATGTTTTGTGGGAAAGAAACAC GCCAGGAGATGACCATTTCTGATGCAACTAGCAACAGTCAATTAGATTCC GAAACAGTGTCAGCTGTTAGTACCATCAGCGAAGCTCCACCAAAAGCTGT GGCTCGTTCTTTCGAATTGATTCCACTAGTGGAGCCTGCAGATTGTGAAT CCTGCACCAAAAGAATGCCAACCATCCATTCTGCGGCTGGTGGTAATATC gataatgaaaaattattgtTCAATGCCACAAAGAAATCCATTAGTGAGGA TGTAGAAATTTTCGAATGTCAAGAATGCAAACGTGATTTCCTCTGTAAGC ACCCCGTTGATGAGAATTTAGTACTGGCGTCCGCCCTCCAAGCTAACGAT ACGGTCGCCGCTGACGCCATCTTCAACAAAAAGTTCAGACCCTATTCTTG TCCGATCTGCAATCGATCTTTTGAATCTGCCAATGAGATGTACCAGCATG AAGTGAAACATTCCAACACAAACCGTCGGTATTCGTGTGCTAAGTGTCAC ATGAAATTTGTCACTCGAAGCTCACTACAAGAGCATTATAATACTTCTAA GAATGGCTGTGCTCCGAAGAAATGCCAACTTTGCTCCAAGGAGTTCGTTC ACGCAAGTCATTTGAAAAGGCACATGACAAACGTTCATATAGGTGTGAAA CCGTTTGGTTGTGACATTTGTTCACACGAGTTCAGTCAGAAAAGTGATCT TCAACGACATGAGAAAAGGCATAAGATTGAAGGACGTTATACATGTGTGA AATGCTGGCTGATGTATGATACTATTGAAGAGCTACGAGAACATTGTAAC GAGAGACACCAGAAAGGTTCTAAAAAAGCCCCTGCTCCCGAGCAAACATT TAAATGCGAGATGTGCCCGAAAAGTTTCAAAAGGAAATCACATTACACGA GACATTTGACTATTCACTCGGGAATTAAACCTCACTCTTGTGAGCATTGC GGGAAATCTTTCAATCAGAAATCTGACTTGAAGCGCCATGTACAAACACA TGAACGAAGGAAGGAAAAAGATGGCATTCCACAACAAGATTTTGAGATGG ATGACGGAACTGAAGGGGAAGGAGAACCTCCATTCATTTGTAGTATTTGC TCTCGATCGTTTAATCAAAAACTTCTCCTTGACTCACATATGACGGTCAC ACATGAAAGAATGATGGGCGCCGGCGTTTCtttcttgaaataaaatttca ataatcTTTGAATTTGTAAACTTTATTCATATTTAGCGTCAGCTCGTACT CCAAAAAAATATCTGAATTTAAATATAATGCAAGACATCGTCCGTTTTtt atattctcaacttcagttgag Run BLAST on NCBI transcript from alignment at sc0000091:344005..349645- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009283 ID=TCONS_00009283|Name=TCONS_00009283|organism=Clytia hemisphaerica|type=transcript|length=5641bp|location=Sequence derived from alignment at sc0000091:344005..349645- (Clytia hemisphaerica) CGCACGCGTCAGCAGGGTCCTCCAGAATGTGCTAAATTTTCAAGGGCAGG
GAGGAGGGGTAAAGTTTTGCCAATATTTTTAGGTGCAAAATCACTGAAAA
TCAGCCTATTTCACCACTTTTTCACCTGGCTTTTTAGCAGCTTTTCTGAA
AGAGTATACAAAGTTTAGGGGCAGATTTCTGATATTCTAATTTTTCCTTG
GACTTGGAGGCAGCCCCTGACATGTTCTTAAAACTGGGCTTCGGCAGACA
AAAAACTGCACAGCTGTACACACAGATACATTGTTTTAGTTCATAAAAGA
TGAAATACAGACCCTTGCTGATGACCTGAGCTGAGTGCTTATCAGTTTTG
GTTCTATAGTTTGTCATTTTAATCTGTAATATCACACGTTTAGTTTCTTT
CACATCTCTAAACCACAGATTTATATACGAGAAGCGTCTTTTTTCTTCTC
TATGAAAAAATGATAAGCGCCGTTCAATAGATGGGAAACAAAATACATTT
CAAATTTGTTCCATTTTAGCCCCCGCTCCTTTAGCTGCCATTTCTCCTCT
CAGCCTGGTCGATCCTACTCTATTTTAGTTTGATCGTTTAGCTTTATGAA
TGTTTTTTATGGTGCCCGCCCTGCCAGGTTAGTGGTTACAGGCTCTTCTT
TGCTTGACCTGCATAAGCATGGAGTCATTACAGGACGCACAACCACAACC
TTCAGGACCAGCAGAAGAGTCACAAGCTCCGAAAGCACAAGGATTAAGCA
CGATATCCAATTCAGATGATCCTACCTCTAATGTCATTGATTACATCCAG
AAGCAAGTTGAATCTGCAGTTTATGAAATAAACAAAATCACTGGCGTAAA
AACTGAGGTATAGCTAAACCCAATAAACTTGAATCCATTTTTCCTGGATG
CAAAGGACAGTGCCAGTGCCAGTTTTAGATGGGTGTTGCTAAACTTGAGA
TTGTGCATTATGTGGAACAGTGAAGTTAGCTAGCTGGGTACGGTATTATG
CGGGTGGTGACAAATCAAAATACAGATTTATAATAATTTCATTATTTCTG
ATTTCTCACAAATCTGCCAGTCAGCTTTTTTTGGACCTACCTCAGTCAGA
GGGTTGGCAGACGATATCATACTCCAGGGTGCAAGTGAAATTTTTCAATC
CGCGGACCTAGACGGGGGTTCGGTTATTATCAGTTAGGGTTAGGGTTGGA
GCTCGAGAGTCACAATATAAGGCCGAAGGCCTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGATCCTGTAGGG
ATCCTTGTAGGGGCACCGGTAGGGTTGGGAGCTTTCTTAATTAAGGTCTG
TAAATTACACGCTATAAGTATTTGTGAATGACGGCTCTCTGTCGTGTCTC
GTTGGCGTAAGCGGTTAGGCATTGGGTTTGTAAACCAAGGTTGCTTGCAT
TTGGTGGTTCGAGCCGGGGTCGGAGACCTGTTTCACCGGTATTGGCAAAT
TTCAGAAAAATACTTAGAAAACAGTTAGAAACACTTGAGAAAGACAGAAA
ATCAGGATAGAAGATAGGAAAGTAGAAAAAAGGGAGAAAATAAGAAACGA
TGCATCCTGGAGTATGATATCGTTTGCCAAACACCTCAGAAGTCCCTTTA
ATTTAACCTTTGTTTGTCTGTTCGTTCGTCCATTCGTCTGTTACCGTGAA
GTCGGGTAACTTGCATATATCAGTGGAGGGAAACTTGCATAGCCATATCA
AATGACTGACCAATCAAAGCAGCAAAATTTCAAAACAAATGAACTACGCA
GCTCCGCTCACAGCTCTACTCTACCACCATTTTTGTTTTGACTTAACTTT
GTATTTTAGTCACCAGCCAGGTCATTCATTTGAGGGCTATGCATGTTAAC
CTAAGAATAAAATAGTAAAATGGCTCTTAGCAGGGATTTAATTTCCATAA
TGGTGGACATAGAGGCATCCCAGACCCAAATAATTTTGATTTCCCTGGAG
TATCTCCAGATGGTCCAGAATACCATCACTGCAAAAAGAATTTTAGTCAC
CATTTGCATAAGCTCATTTTTGTAGAAGTTTGCCTTAAAAAACTGCTATG
TTTTTATTAAAGATGATTTTTTTTTGCTTAAAAGAGATTTTTGAACATGC
CATTTTGAATTTTTGAAAAAAGTGGAAAAATTGAAAAATTTATTTTGCTT
ATTAAGACTTTGATTGAAGACTTCCATATATCTGAAAATTTTAGACATGT
GAGTTTTAAATCAGTTTAAAAGTTATGAACTTGCAAGATTGACCTTTTTG
CTACCCAAGATTGTCTTAAAACGACTCATTTAGGGCTCAAACGGGCACAA
TTTTGAACTGAATATGATTATTTTGTTGTTTCTTCATAAAATCTAGTATA
TACAACAAATGAAAAAAAAATAGATTTGCAATAATTTTGACATATTAATA
ACAGGCCTGAAAAGGCCAAAAAATGCCATTATTTCTAATTTTGCCTATAG
TGCAAATCAGGGGGGGGGGTTCTCTTCTGAACTTAAAAATTGTGCAGAAT
GCCTCCTGTCTACCCTTTACAATGACTTTTTAAAAAGTCTAGAATTGATT
AATGTAACAGTACAGTAGTATGCGAGTGCAAAGGTGTAAAGAAAGTAATC
TTTGACGGAAGAAACGTTTTCCATTTTTTAGAATGATGTCGTTTTCTACA
ACGTTCAATGGGTGGCACACACATGGATTCCTGAATCAATCCTCTCACAG
TTTAATCATTTCATTGAGCGTTTCTGGCAAGAAAATGGTGGCAGAGAAAA
GTTCATCAAAAGTCAAAAAGAACCGATTCTAGTTGTAAGAATTTGAGATT
CGATTCACATTCAACATCATTTAAAACAGATGAAAATGAGTATGCTTTTT
CGTTAAAGCTTTGAACAATTTTAAAATTCACTTACATGTACATGAAGTTG
TGATATTAATGATATTGATAGATGTTGTTTTTTAGAAAGATTGACTTTTT
TCTCTTTAAGACAGAACATGTAATAGAAGAAGGTCAAAATGGTCAGCAAA
AAGATGAATCGGACCCCTCCATTCAAGAACATGATCTGGGTAAGGTGTTT
AGAATTGCTAAAAAGTTGCTTTCGAAAAGNNNNNNNNNNNNNNNNNNNNN
NNNACAGTAGTATGCGAGTGGAAAGGTGTAAAGAAAGTAATCTTTGACGG
AAGAAACGTTTTCCATTTTTTAGAATGATGTCGTTTTCTACAACGTTCAA
TGGGTGGCACACACATGGATTCCTGAATCAATCCTCTCACAGTTTAATCA
TTTCATTGAGCGTTTCTGGCAAGAAAATGGTGGCAGAGAAAAGTTCATCA
AAAGTCAAAAAGAACCGATTCTAGTTGTAAGAATTTGAGATTCGATTCAC
ATTCAACATCATTTAAAACAGATGAAAATGAGTATGCTTTTTCGTTAAAG
CTTTGAACAATTTTAAAATTCACTTACATGTACATGAAGTTGTGATATTA
ATGATATTGATAGATGTTTTTTTTAGAAAGATTGACTTTTTTCTCTTTAA
GACAGAACATGTAATAGAAGAAGGTCAAAATGGTCAGCAAAAAGATGAAT
CGGACCCCTCCATTCAAGAGCAAGATCTGGGTAAGGTGTTTAGAATTGCT
AAAAAGTTGCTTTCGAAAAGTAACGTTCCATGTTAAAACAAGCTTGAATC
TGTATCTGGGATAACTAGAAATGTTATCAATCCGAACTTTAAAGAGGAAA
GAATAACTTAAATTTTGGCCTTTAATACATTAAATTTGATTCAGCCTGGT
TCAGCCGCTCAAAAGTTATAAAAAAAGTACGAAGAGAGCGTGTTTTGTCG
TGAGTTATTTTCTTGTTTTCGTTATAACTTTTGAACACACGAAGCAAATT
AAATGGTATGCTAGCTCAAGATTAAGCTGGCCTCTCCTTTTTCCAATTTT
GAAAAGTGTCGATTTATAAAATCTTTAGTTTTCTCAGAATCTCAATTCAA
ATCTGTACACTTTTCAATGAAACACTCGGTATTATTTTTTATTTAGTTTT
AGTTTTGAACCGGGACAATAATTTAATATATAAAGGATTGATTATTTCCT
TATGTTTAGGTGTCAGCAACGCAGAAGAACATTTCGAAACAACTTGCTCA
AAATGCGATCAAGTATTTTATTTGAAAAGTAATTGGGATCTTCATATAAT
GTTTTGTGGGAAAGAAACACGCCAGGAGATGACCATTTCTGATGCAACTA
GCAACAGTCAATTAGATTCCGAAACAGTGTCAGCTGTTAGTACCATCAGC
GAAGCTCCACCAAAAGCTGTGGCTCGTTCTTTCGAATTGATTCCACTAGT
GGAGCCTGCAGATTGTGAATCCTGCACCAAAAGAATGCCAACCATCCATT
CTGCGGCTGGTGGTAATATCGATAATGAAAAATTATTGTTCAATGCCACA
AAGAAATCCATTAGTGAGGATGTAGAAATTTTCGAATGTCAAGAATGCAA
ACGTGATTTCCTCTGTAAGCACCCCGTTGATGAGAATTTAGTACTGGCGT
CCGCCCTCCAAGCTAACGATACGGTCGCCGCTGACGCCATCTTCAACAAA
AAGTTCAGACCCTATTCTTGTCCGATCTGCAATCGATCTTTTGAATCTGC
CAATGAGATGTACCAGCATGAAGTGAAACATTCCAACACAAACCGTCGGT
ATTCGTGTGCTAAGTGTCACATGAAATTTGTCACTCGAAGCTCACTACAA
GAGCATTATAATACTTCTAAGAATGGCTGTGCTCCGAAGAAATGCCAACT
TTGCTCCAAGGAGTTCGTTCACGCAAGTCATTTGAAAAGGCACATGACAA
ACGTTCATATAGGTGTGAAACCGTTTGGTTGTGACATTTGTTCACACGAG
TTCAGTCAGAAAAGTGATCTTCAACGACATGAGAAAAGGCATAAGATTGA
AGGACGTTATACATGTGTGAAATGCTGGCTGATGTATGATACTATTGAAG
AGCTACGAGAACATTGTAACGAGAGACACCAGAAAGGTTCTAAAAAAGCC
CCTGCTCCCGAGCAAACATTTAAATGCGAGATGTGCCCGAAAAGTTTCAA
AAGGAAATCACATTACACGAGACATTTGACTATTCACTCGGGAATTAAAC
CTCACTCTTGTGAGCATTGCGGGAAATCTTTCAATCAGAAATCTGACTTG
AAGCGCCATGTACAAACACATGAACGAAGGAAGGAAAAAGATGGCATTCC
ACAACAAGATTTTGAGATGGATGACGGAACTGAAGGGGAAGGAGAACCTC
CATTCATTTGTAGTATTTGCTCTCGATCGTTTAATCAAAAACTTCTCCTT
GACTCACATATGACGGTCACACATGAAAGAATGATGGGCGCCGGCGTTTC
TTTCTTGAAATAAAATTTCAATAATCTTTGAATTTGTAAACTTTATTCAT
ATTTAGCGTCAGCTCGTACTCCAAAAAAATATCTGAATTTAAATATAATG
CAAGACATCGTCCGTTTTTTATATTCTCAACTTCAGTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009283-exon-sc0000091-1575043694:348789..349645 | TCONS_00009283-exon-sc0000091-1575043694:348789..349645 | Clytia hemisphaerica | exon |
TCONS_00009283-exon-sc0000091-1575043694:346712..346864 | TCONS_00009283-exon-sc0000091-1575043694:346712..346864 | Clytia hemisphaerica | exon |
TCONS_00009283-exon-sc0000091-1575043694:346457..346535 | TCONS_00009283-exon-sc0000091-1575043694:346457..346535 | Clytia hemisphaerica | exon |
TCONS_00009283-exon-sc0000091-1575043694:344005..345436 | TCONS_00009283-exon-sc0000091-1575043694:344005..345436 | Clytia hemisphaerica | exon |
TCONS_00009283-exon-sc0000091-1510915933:348789..349645 | TCONS_00009283-exon-sc0000091-1510915933:348789..349645 | Clytia hemisphaerica | exon |
TCONS_00009283-exon-sc0000091-1510915933:346712..346864 | TCONS_00009283-exon-sc0000091-1510915933:346712..346864 | Clytia hemisphaerica | exon |
TCONS_00009283-exon-sc0000091-1510915933:346457..346535 | TCONS_00009283-exon-sc0000091-1510915933:346457..346535 | Clytia hemisphaerica | exon |
TCONS_00009283-exon-sc0000091-1510915933:344005..345436 | TCONS_00009283-exon-sc0000091-1510915933:344005..345436 | Clytia hemisphaerica | exon |
TCONS_00009283-exon-sc0000091-1491911889:348789..349645 | TCONS_00009283-exon-sc0000091-1491911889:348789..349645 | Clytia hemisphaerica | exon |
TCONS_00009283-exon-sc0000091-1491911889:346712..346864 | TCONS_00009283-exon-sc0000091-1491911889:346712..346864 | Clytia hemisphaerica | exon |
TCONS_00009283-exon-sc0000091-1491911889:346457..346535 | TCONS_00009283-exon-sc0000091-1491911889:346457..346535 | Clytia hemisphaerica | exon |
TCONS_00009283-exon-sc0000091-1491911889:344005..345436 | TCONS_00009283-exon-sc0000091-1491911889:344005..345436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000091 | supercontig | sc0000091:344005..349645 - |
Blast
BLAST of TCONS_00009283 vs. Swiss-Prot (Human)
Match: ZN358 (Zinc finger protein 358 OS=Homo sapiens GN=ZNF358 PE=1 SV=2) HSP 1 Score: 144.436 bits (363), Expect = 4.789e-36 Identity = 105/395 (26.58%), Postives = 166/395 (42.03%), Query Frame = 3
Query: 1212 TISDATSNSQLDSETVSA-VSTISEAP------PKAVARSFEL-------IPLVEPADCESCTKRMPTIHSAAGGNIDNEKLLFN--ATKKSISEDVEIFECQECKRDFLCKHPVDENLVLASALQANDTVAADAIFNKKFRPYSCPICNRSFESANEMYQHEVKHSNTNRRYSCAKCHMKFVTRSSLQEHYNTSKNGCAPKKCQLCSKEFVHASHLKRHMTNVHIGVKPFGCDICSHEFSQKSDLQRHEKRHKIEGRYTCVKCWLMYDTIEELREHCNERHQKGSKKAPAPEQTFKCEMCPKSFKRKSHYTRHLTIHSGIKPHSCEHCGKSFNQKSDLKRHVQTHERRKEKDGIPQQDFEMDDGTEGEGEPPFICSICSRSFNQKLLLDSHMTV 2348
T+ + S D E VS + +EAP P ++ SF+L +PL+ + ++ + P + + G ++L A + + F C +C R F + + ++ + +PY CP C +SF + QH H+ R Y CA C F RS+L +H +S +G P C +C K F H S L +H+ H G +P C +C+ F Q S L +H + H E Y C +C + L +H H E+ ++C C K+F + S+ HL IH+G +P++C HC K+F Q S L +H+ H GE P+ C +C ++F Q L H V
Sbjct: 52 TVPEDVDPSYEDLEPVSEDLDPDAEAPGSEPQDPDPMSSSFDLDPDVIGPVPLILDPNSDTLSPGDPKVDPISSGLTATPQVLATSPAVLPAPASPPRPFSCPDCGRAF----------------RRSSGLSQHRRTHSGEKPYRCPDCGKSFSHGATLAQHRGIHTGA-RPYQCAACGKAFGWRSTLLKH-RSSHSGEKPHHCPVCGKAFGHGSLLAQHL-RTHGGPRPHKCPVCAKGFGQGSALLKHLRTHTGERPYPCPQCGKAFGQSSALLQH-QRTHTA--------ERPYRCPHCGKAFGQSSNLQHHLRIHTGERPYACPHCSKAFGQSSALLQHLHVH----------------------SGERPYRCQLCGKAFGQASSLTKHKRV 396
The following BLAST results are available for this feature:
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