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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009277 ID=TCONS_00009277|Name=TCONS_00009277|organism=Clytia hemisphaerica|type=transcript|length=3098bp
ACAAGGAAAATAGAATTGAAAGATTAATCATAAAGTTTTTATACAATTTT
TGATGATATGATGATGATGCCATTGTTTTGCAATCTTTAGATGGTATCTG
ATGTCctttatttgacaaaaaaatttactttttctgcGGCACACCGTCTT
CATTCCAAAGAATTATCAGATGCTGAGAATGAAAAATTTTATGGGAAATG
CAATCGTGTACATGGACATAACTACACCGTAAAGGTCACATTGCGTGGAA
AAGTTGATCCAAAGTTAGGTTATTTCATAAATGCCCATGAGCTCAAACAG
TATATGATCACTGCAATTGACAATGTGTTAGACCATCGAAATATAGATGT
AGACATTCCTTTTTTCCGCCAATATGTCAGTACTATGGAGAATTTGTCCA
TCTTTATTTGGCAAAGTATGAGAGATGTGATGAAGGAACCTGATTTGCTT
TATGAAGTCAAGATCAAAGAGACGGATAGCAGTACTGTGGTTTATAGAGG
CGAACAGACCTgatcaatatttcaaaagtcgCATTGGTTAGAATTTGTAA
TATATTATTAAATGAATTCTCTTTCTGAATCTCAAACCCTTTGAGACTGT
TTTTAATCTGTAGAGATGTTAAGAATTAAGATTCATAAACGTTTATTAAT
TTCCAAGTCTTTCTCTACTGAATTAGTTATAACGTCTGAACGACAACAGT
TTCAAAAGCATACTTAAAGGCAAAGCAATCTCTTTTCACGAATTTCAATC
AATAGTctgtttttatcattattttgacAGACCACTGTTTGATTCATTTC
TTTCTTGCGAATGCTCTCTCAATACACAGTGGGTACAGGAATTCTCCTTC
TTTGTAACTGTTACTGCTTTGATGAACAAGCCAACATTTTTTATTGACGA
AAACACAATCTCTCTTCAACTTGGCATCACCTGTAAGGAAACAGTATGAG
TTTAATTCATTCGACTGGGATGTTATCCCTTTGATTTAGAGTATTTATAg
agtaatatatatttttttattatctgAACTTACGAGGAATATACTCTTTT
CTAATGGTTAATTTTAAGGAATGCGATGTAGatcttaaaaaaatattcag
TGAAttagaaaatataaacaacAAAGAAGGATGGAGTTAGTGAAGGAACG
TTTGAATCAAATGAAAGATGACTATGAAACTTCTAATGACAAGATCATCA
AATTCGAAAGTGAACTCCAAGAAAGTCGACGAAACTTAGAATCCGCTGTC
AACGAGAAAGAATCACTTTTGAGGCGTATTGAAGTTGTCGAATCACAAAT
CATCAATGCCAATAAGAATCGTGAACGGATCGTTGATGATTTGAGGTATT
TGGAACGCAATACAGATATCAATGAGGGGAAACGAAAATTCCTCGAAAAT
AAAGAACTCGAAGGTGACATAAATATTTGTCGACTTGAAGAGAGATTATC
TGAAGTTCGAgataagttttttgaaaactctATCAAATGTGAAGAGGGTG
AACGCAGGCTAGCCGTACTCCGATCCGATTTTGATAAATTACGGTCTAGA
CGTTTGGAGATGCAGGAGCATGCGGTTTACTTGCAGCGAGATTTGGATGA
AAAGACATTGAAATCACGTGAAATGGAGGATCACTTGGCAAACAATGGTG
CCAAGGAATACGACGATGAAGCCAATCTAAGGATTGTTGAGGATTTGCAT
CGTGAGGAATTGGATCGAGAAGAAAGAGCCAGATTGAGAGTTCAAAAGCT
ACAACGCGTCATCGAAATGGTTGAAGATCAAATAGAAGAGGTTCGCAGGC
GAAAAAAGAAGTTGCAAGTTGAATACAAAAACTCTTTGGACATTATCGTG
AATTAAGGAGAGTAATCCACCATTTTTCTCTTGTTGCCATGGGTGTGGAA
GCCATAATGTTTATGAATTGGACAGTCTAACCGCAAATTGTTAAAAAGTC
GAGATAATTACAAAAAGGCAATTTATTCTTCCTGTGTTGATCAAGTattc
atttttatcaatattgaaaacattttgttatatatttatttttaaaagaa
gttttcattttttaaaagcaAAGTATTATATGCACTCTCGTTATTTTATT
TGTTGCATAGGTAGTcagtttctatttttaaagctATATTGCACGTGTTT
TTGACAAGGTTTAGTGAAGTGAAATGACAATAGCTTGACTTCAAATACAG
GttgataataatgataatacgtTTTGTAGGAAatagtttgatttaaaagc
AAACAACTTTCAAAGACCAGCCTCCGATACTCCTCTCGATCAAGCTCGTT
TTTATGTGTTATAAAACAGCATATAATTATATCGTTTCATTCAGAAGAGA
GGGACTTGGATTTTCGATGTAggaagttttaacttttttttcactGTTCG
TGTATATTATGTTCTCATGGAAAAtatcttgaatatttttttctgaagac
TATTTCGTGACTAGACttctgtttcactttttcttttacaGTATTTCATC
TCTTAAATTTTCAGGCTTTCAATTAttaatatttcattattttctcgAAA
AGCCTTTTTCCTTCTAAATCTAAGGAAAATGAAAAGTCAAAACAATCTCT
ATAGGATTTTATGAAGAAGTCTTTCTTAAatcttttgatttcaatttAAA
GACTAGTGTAAATGGTCCCTTAGTCCAAtaatactttcgttttctcgatG
GCATTTTAGAAGGATTTTGAAAATGATACCATTTTTTGTTATTACTTCAA
TTGCCATTGATACGaacttttctttctctttttatttctttgtaaCCAGA
AGAGGCTTCTTTAAACGGCAACACTTTAGAACATTAAATAAATTTAGAAA
GCAgtttattttgaagaatataATATTAATATAAGCAATGTATATTATga
taataaattttcttttatattgaagttgtttttattttgccattgagaaa
ttattattattagcatattgtaaagaaaattgaagaatttaAAGGAAAGT
AGATCTTTGGCATGATTACTGTCAACTTTTGAGTTGGAATCTCGAATAAC
TCGGTGATAAGTCTGTAATCAAACTTAATCTGAAACTTTCTCCTAAAT Run BLAST on NCBI transcript from alignment at sc0000091:248455..252425- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009277 ID=TCONS_00009277|Name=TCONS_00009277|organism=Clytia hemisphaerica|type=transcript|length=3971bp|location=Sequence derived from alignment at sc0000091:248455..252425- (Clytia hemisphaerica)
ACAAGGAAAATAGAATTGAAAGATTAATCATAAAGTTTTTATACAATTTT
TGATGATATGATGATGATGCCATTGTTTTGCAATCTTTAGATGGTATCTG
ATGTCCTTTATTTGACAAAAAAATTTACTTTTTCTGCGGCACACCGTCTT
CATTCCAAAGAATTATCAGATGCTGAGAATGAAAAATTTTATGGGAAATG
CAATCGTGTACATGGACATAACTACACCGTAAAGGTAAAGGCCGATTTGA
ATTTTAAAGGAATCTTGGACATTCATTTTTAGTTATTTCTTGACAAGTTT
TCAAAGCTACCTGATGCTTTATATTTTCCAAATGAATAATTATATTTTCA
CCACGTTTGTCATTGTAACGTCATTTTCTCTCATTTGTTTATATTATTTG
TACTAAGTGGTATTCTTTTCAGGACTTATAAACGTTTAAAGTAACTGTTT
GTCACTCTTTTGATCACCGCACTGTAACCTTCCCATTAATACCTCTTGTG
ACGTTCTTAATTTTTTCTTAAATAAAAAGTCTCTTATAATACTATGAATT
TGATGCATTTTTACTTATATGTAAAGTGGAAAAATAATGTATACGGTTAT
GTTAAAAGCTTGAAATATTTATGAATTGTGTATTTTAGGTCACATTGCGT
GGAAAAGTTGATCCAAAGTTAGGTTATTTCATAAATGCCCATGAGCTCAA
ACAGTATATGATCACTGCAATTGACAATGTGTTAGACCATCGAAATATAG
ATGTAGACATTCCTTTTTTCCGCCAATATGTCAGTACTATGGAGAATTTG
TCCATCTTTATTTGGCAAAGTATGAGAGATGTGATGAAGGAACCTGATTT
GCTTTATGAAGTCAAGATCAAAGAGACGGATAGCAGTACTGTGGTTTATA
GAGGCGAACAGACCTGATCAATATTTCAAAAGTCGCATTGGTTAGAATTT
GTAATATATTATTAAATGAATTCTCTTTCTGAATCTCAAACCCTTTGAGA
CTGTTTTTAATCTGTAGAGATGTTAAGAATTAAGATTCATAAACGTTTAT
TAATTTCCAAGTCTTTCTCTACTGAATTAGTTATAACGTCTGAACGACAA
CAGTTTCAAAAGCATACTTAAAGGCAAAGCAATCTCTTTTCACGAATTTC
AATCAATAGTCTGTTTTTATCATTATTTTGACAGACCACTGTTTGATTCA
TTTCTTTCTTGCGAATGCTCTCTCAATACACAGTGGGTACAGGAATTCTC
CTTCTTTGTAACTGTTACTGCTTTGATGAACAAGCCAACATTTTTTATTG
ACGAAAACACAATCTCTCTTCAACTTGGCATCACCTGTAAGGAAACAGTA
TGAGTTTAATTCATTCGACTGGGATGTTATCCCTTTGATTTAGAGTATTT
ATAGAGTAATATATATTTTTTTATTATCTGAACTTACGAGGAATATACTC
TTTTCTAATGGTTAATTTTAAGGAATGCGATGTAGATCTTAAAAAAATAT
TCAGGTACATACAAATACATTGGAAATTTTTTGTCGTTTTTTTGCTGTTT
TATTTCGGAGTGGAGTTTTTCAAAGAAATTGTATCTATATTTCAGAGAAA
TGTTGATTAATAAATTTTTTTTGATCGTTTCAGTGAATTAGAAAATATAA
ACAACAAAGAAGGATGGAGTTAGTGAAGGAACGTTTGAATCAAATGAAAG
ATGACTATGAAACTTCTAATGACAAGATCATCAAATTCGAAAGTGAACTC
CAAGAAAGTCGACGAAACTTAGAATCCGCTGTCAACGAGAAAGAATCACT
TTTGAGGCGTATTGAAGTTGTCGAATCACAAATCATCAATGCCAATAAGA
ATCGTGAACGGATCGTTGATGATTTGAGGTATTTGGAACGCAATACAGAT
ATCAATGAGGGGAAACGAAAATTCCTCGAAAATAAAGAACTCGAAGGTGA
CATAAATATTTGTCGACTTGAAGAGAGATTATCTGAAGTTCGAGATAAGT
TTTTTGAAAACTCTATCAAATGTGAAGAGGGTGAACGCAGGCTAGCCGTA
CTCCGATCCGATTTTGATAAATTACGGTCTAGACGTTTGGAGATGCAGGA
GCATGCGGTTTACTTGCAGCGAGATTTGGATGAAAAGACATTGAAATCAC
GTGAAATGGAGGATCACTTGGCAAACAATGGTGCCAAGGAATACGACGAT
GAAGCCAATCTAAGGATTGTTGAGGATTTGCATCGTGAGGAATTGGATCG
AGAAGAAAGAGCCAGATTGAGAGTTCAAAAGCTACAACGCGTCATCGAAA
TGGTTGAAGGTACATTTGTCAATTTTATTGAAGTGGGGAGGGTTACGGTC
TCTCTGCAAGTCTATAAAGTATATCATATTCCTTCATCAGATAGGCTAAA
TTCTTACTAATATCAAGGAAAACCAATCTGGAGTATAGTTAAGAGAGTGA
AAGGTCTATAAATTAGAATGTGAAATTTATGGCGAGCATTGGTTCTTTTC
CTATAGCCTGATCCCATAAAATAATCAAGCACCATAGTTGAATACGAATA
TCATAAAAGAAAATCTTTGAACGTCGAAATAGGGCTTAAAGTTGGTCACT
CAAATCGACAAAGACTTGAAGTTGAACTTGACACTGCTTCTATTTTTAGA
TCAAATAGAAGAGGTTCGCAGGCGAAAAAAGAAGTTGCAAGTTGAATACA
AAAACTCTTTGGACATTATCGTGAATTAAGGAGAGTAATCCACCATTTTT
CTCTTGTTGCCATGGGTGTGGAAGCCATAATGTTTATGAATTGGACAGTC
TAACCGCAAATTGTTAAAAAGTCGAGATAATTACAAAAAGGCAATTTATT
CTTCCTGTGTTGATCAAGTATTCATTTTTATCAATATTGAAAACATTTTG
TTATATATTTATTTTTAAAAGAAGTTTTCATTTTTTAAAAGCAAAGTATT
ATATGCACTCTCGTTATTTTATTTGTTGCATAGGTAGTCAGTTTCTATTT
TTAAAGCTATATTGCACGTGTTTTTGACAAGGTTTAGTGAAGTGAAATGA
CAATAGCTTGACTTCAAATACAGGTTGATAATAATGATAATACGTTTTGT
AGGAAATAGTTTGATTTAAAAGCAAACAACTTTCAAAGACCAGCCTCCGA
TACTCCTCTCGATCAAGCTCGTTTTTATGTGTTATAAAACAGCATATAAT
TATATCGTTTCATTCAGAAGAGAGGGACTTGGATTTTCGATGTAGGAAGT
TTTAACTTTTTTTTCACTGTTCGTGTATATTATGTTCTCATGGAAAATAT
CTTGAATATTTTTTTCTGAAGACTATTTCGTGACTAGACTTCTGTTTCAC
TTTTTCTTTTACAGTATTTCATCTCTTAAATTTTCAGGCTTTCAATTATT
AATATTTCATTATTTTCTCGAAAAGCCTTTTTCCTTCTAAATCTAAGGAA
AATGAAAAGTCAAAACAATCTCTATAGGATTTTATGAAGAAGTCTTTCTT
AAATCTTTTGATTTCAATTTAAAGACTAGTGTAAATGGTCCCTTAGTCCA
ATAATACTTTCGTTTTCTCGATGGCATTTTAGAAGGATTTTGAAAATGAT
ACCATTTTTTGTTATTACTTCAATTGCCATTGATACGAACTTTTCTTTCT
CTTTTTATTTCTTTGTAACCAGAAGAGGCTTCTTTAAACGGCAACACTTT
AGAACATTAAATAAATTTAGAAAGCAGTTTATTTTGAAGAATATAATATT
AATATAAGCAATGTATATTATGATAATAAATTTTCTTTTATATTGAAGTT
GTTTTTATTTTGCCATTGAGAAATTATTATTATTAGCATATTGTAAAGAA
AATTGAAGAATTTAAAGGAAAGTAGATCTTTGGCATGATTACTGTCAACT
TTTGAGTTGGAATCTCGAATAACTCGGTGATAAGTCTGTAATCAAACTTA
ATCTGAAACTTTCTCCTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009277-exon-sc0000091-1575043694:252192..252425 | TCONS_00009277-exon-sc0000091-1575043694:252192..252425 | Clytia hemisphaerica | exon |
| TCONS_00009277-exon-sc0000091-1575043694:250922..251787 | TCONS_00009277-exon-sc0000091-1575043694:250922..251787 | Clytia hemisphaerica | exon |
| TCONS_00009277-exon-sc0000091-1575043694:250117..250792 | TCONS_00009277-exon-sc0000091-1575043694:250117..250792 | Clytia hemisphaerica | exon |
| TCONS_00009277-exon-sc0000091-1575043694:248455..249776 | TCONS_00009277-exon-sc0000091-1575043694:248455..249776 | Clytia hemisphaerica | exon |
| TCONS_00009277-exon-sc0000091-1510915933:252192..252425 | TCONS_00009277-exon-sc0000091-1510915933:252192..252425 | Clytia hemisphaerica | exon |
| TCONS_00009277-exon-sc0000091-1510915933:250922..251787 | TCONS_00009277-exon-sc0000091-1510915933:250922..251787 | Clytia hemisphaerica | exon |
| TCONS_00009277-exon-sc0000091-1510915933:250117..250792 | TCONS_00009277-exon-sc0000091-1510915933:250117..250792 | Clytia hemisphaerica | exon |
| TCONS_00009277-exon-sc0000091-1510915933:248455..249776 | TCONS_00009277-exon-sc0000091-1510915933:248455..249776 | Clytia hemisphaerica | exon |
| TCONS_00009277-exon-sc0000091-1491911889:252192..252425 | TCONS_00009277-exon-sc0000091-1491911889:252192..252425 | Clytia hemisphaerica | exon |
| TCONS_00009277-exon-sc0000091-1491911889:250922..251787 | TCONS_00009277-exon-sc0000091-1491911889:250922..251787 | Clytia hemisphaerica | exon |
| TCONS_00009277-exon-sc0000091-1491911889:250117..250792 | TCONS_00009277-exon-sc0000091-1491911889:250117..250792 | Clytia hemisphaerica | exon |
| TCONS_00009277-exon-sc0000091-1491911889:248455..249776 | TCONS_00009277-exon-sc0000091-1491911889:248455..249776 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:248455..252425 - |
Blast
BLAST of TCONS_00009277 vs. Swiss-Prot (Human)
Match: PTPS (6-pyruvoyl tetrahydrobiopterin synthase OS=Homo sapiens GN=PTS PE=1 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 3.956e-37 Identity = 65/133 (48.87%), Postives = 98/133 (73.68%), Query Frame = 1
Query: 112 LTKKFTFSAAHRLHSKELSDAENEKFYGKCNRV--HGHNYTVKVTLRGKVDPKLGYFINAHELKQYMITAIDNVLDHRNIDVDIPFFRQYVSTMENLSIFIWQSMRDVMKEPDLLYEVKIKETDSSTVVYRGE 504
++++ +FSA+HRL+SK LSD EN K +GKCN HGHNY V VT+ G++DP G +N +LK+YM AI LDH+N+D+D+P+F VST EN++++IW +++ V+ +LY+VK+ ETD++ VVY+GE
Sbjct: 14 VSRRISFSASHRLYSKFLSDEENLKLFGKCNNPNGHGHNYKVVVTVHGEIDPATGMVMNLADLKKYMEEAIMQPLDHKNLDMDVPYFADVVSTTENVAVYIWDNLQKVLP-VGVLYKVKVYETDNNIVVYKGE 145
The following BLAST results are available for this feature:
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