TCONS_00009275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009275
Unique NameTCONS_00009275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2729

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009275 ID=TCONS_00009275|Name=TCONS_00009275|organism=Clytia hemisphaerica|type=transcript|length=2729bp
AAATTCTTCCAGACTTAGTCTGATGTAAAATCGTATTTGGTCCTTTTTAg
gcttatttatttattttctaaatcaGCTTGTTGATAACAGCTATTTAAAG
TCATTCTTAGAATTCCTATGGAATAAGATCAGACCATCACACCATATAAG
ACTAAAGTTCAAAATggtataaaaaaagtttttattttagcaCAAATATA
ACTTTTACTCGACAAGCAAGCTATCACATACATAATTTGATACTTGATCA
ATCATGAGGGTTTTGATTCCGaaattGGACACTGTCACTATTGGCGATCC
ATCAGAATCGTACAGACCAGAAAAGATCTCAAGAACTAAAAAGACTAAAG
AACAATTTCGTAATTATGATgagaatcttcaaacagataTGGTGAAGAAA
ACTTACCTTGAAATGCATGAGAAGCAATGCgttcaatttgtcaaaaaaat
gcATGAAAAATGGTGCGAGTTCAATCATGCAGAGATGACAATGATGGAAG
CCATCATGTTATTGGATAATCTGGTGGACGAATCTGACCCTGATACGGAC
CTACCAAACTCAATACATGCATTTCAAACAGCTGAACGTATTCGAGAAAG
ATACCCCGATGATGACTGGTTGCACCTGACTGGATTGATCCATGATGCTG
GGAAGGTGATGGCGTTATGGGGCGAACCACAATGGGCGGTTGTGGGTGAT
ACTTTTCCTATTGGGTGCCGCTTTCAAGAAGAATGTGTTTTTCATCGATT
CTTCGAGATGAACCCTGATTACAATAACTCGAACTATAACACAAAGAATG
GTATTTACAAAGAACATTGTGGATTGGACAATGTCACGATGTCATGGGGC
CACGATGAATACATGTACCAACTTTTGAAGTTCAACAAAACAAGCTTACC
TGAAGAAGCTCTTTATCGCATTCGTTACCATTCCNGGGCAATAGCTCGGT
AGTTTGCTGGATTTTCCTTGTCACCTTTCTTGAAGATCGGGGTAACAATC
ATCTTAGCAAAGTGAGATGGAGTATCTACTGAATCCAAGATCTTATTAAA
AATAATCTTGAGCGCATCAACGATTGTGTTTCCACCTGCGNCATGGGAGT
GACGCGTACATGAATTTGTGTGATGAGAAAGATATCAAGTGGCAAGAAAA
GTTGAAGGAATTCAGtaCGTTCGATTTGTATTCGAAAGCAGAATCGATTC
CAGACGTGAAAGCATTGACACCTTACTATCAATCACTCATTGACAAATAC
ATTCCTGGTGTTCTGAGATGGTAGACCGCACCAATCATTGACCTATGGTT
AAGGCGAAGTCTTGAAAATTCGTTGTACTTTCGTCAAACTAAACAATGAA
GTTGGCCTAGTTAATTTTTTCTTCCgtaaaaaagacaatttttatacacc
cttttatttttaaattttattcaccagttttatttttaaattttttattc
accCGTTTTATAAATAAATCTCACTATCGTAGTTTGGTAATTCCTCATGA
AGATTAATTTTCTAATCGCAACTTTGAGGTTTTGAAAATCATGGCTGGCT
TTTATTTACacgtattattttttaaacgtATCCATTTTAATTTAAGTAGT
ACATACAGCTCCAGGGGAGGTATAAACCAAGTAACCCTTTGGCCAACTGA
CCGGTGTGTCACCGGGTTCGAAAGAATGATGGATTCCCCTACTTCCTCTG
TAGATACACTTCCTATATATCTatataagaaactcttttcgctagaggat
gagcagaagcctaaccGTGCGACTGATTTTTCTAGTTAAGTGTTTTTTGC
AACCCAGCCTCTACTCTTTGATGTGGAAATAGGTAGAATATGTACAGTAG
CTTTTCCCCATATTTGCCTGAGTATCCCGCCTCCCCTGGTTTTAGCTATG
CAAATGCTGTGTTTTTCAGGCATGCATGAtttgtttcaaataatttaCCT
TCTTATCTACAATCAgcaccgaaatatattggcaattttgggtattttaa
catttttcagaatttaaaggtcgAAGCGAGAATTTTCACTTTGCTTCATC
GAATTTTTCGATTTAGGAGGGGttttaagtggcttccaggctatattctc
tgccttattggaacatttttgagcttttagatcctaaGATCCTAAGGTTT
TAAGTCTTAAATCTCACGTTAAAacttagagttaaaactctacttccgaa
ctgtacttcaaagcacttaaaatcacttgcggttttaaagtttcgaggga
attccccttttttgCCAAATATTTCTTCGCCGATTGTAGTGTAAATAGAC
ATCTTACGAGTCATTGCTTTTCTCAAGTATTTTCATTTAATACAATCGTG
TTTTAAATACTGTAACTGTGTTaataatttgatcaaatttggaTCAATTC
TCGTCATATTTCTTTGTTTCCTGGGTGAGGTTCATTtgcttctttctttt
tcttttgcgcAATAATGTAATATAAGCACACAAAATATATTTCTACTCTG
TTTTGATCTTTATTTTATCAGGACACCCTGTATCTAATCGTTCGTTATAT
GAATCAATGGAGAAAATGTTCATTAATTCGAGTAATTCTCAGTTATTTCT
ACACGATTTCCATTTGAAAATGTGATGAGAAAACCGTATTCTATCTCATT
TTGTTCGTTgttgtattttattttattcaattgtaTCAAATGGATTCTAA
ACAAAGGAATATAAGTTATCGTGTGATTA
Run BLAST on NCBI

protein sequence of TCONS_00009275-protein

>TCONS_00009275-protein ID=TCONS_00009275-protein|Name=TCONS_00009275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MRVLIPKLDTVTIGDPSESYRPEKISRTKKTKEQFRNYDENLQTDMVKKT
YLEMHEKQCVQFVKKMHEKWCEFNHAEMTMMEAIMLLDNLVDESDPDTDL
PNSIHAFQTAERIRERYPDDDWLHLTGLIHDAGKVMALWGEPQWAVVGDT
FPIGCRFQEECVFHRFFEMNPDYNNSNYNTKNGIYKEHCGLDNVTMSWGH
DEYMYQLLKFNKTSLPEEALYRIRYHSXAIAR
Run BLAST on NCBI

transcript from alignment at sc0000091:240075..248197-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009275 ID=TCONS_00009275|Name=TCONS_00009275|organism=Clytia hemisphaerica|type=transcript|length=8123bp|location=Sequence derived from alignment at sc0000091:240075..248197- (Clytia hemisphaerica)
AAATTCTTCCAGACTTAGTCTGATGTAAAATCGTATTTGGTCCTTTTTAG
GCTTATTTATTTATTTTCTAAATCAGCTTGTTGATAACAGCTATTTAAAG
TCATTCTTAGAATTCCTATGGAATAAGATCAGACCATCACACCATATAAG
ACTAAAGTTCAAAATGGTATAAAAAAAGTTTTTATTTTAGCACAAATATA
ACTTTTACTCGACAAGCAAGCTATCACATACATAATTTGATACTTGATCA
ATCATGAGGGTTTTGATTCCGGTAAGACATAAATTAATTTAGATTTAGAA
GATTAAATTGATCAGTTTCTTCAATGACTTCTAAGTTTAAATTTAAAAAC
AGTCAAGCAATATATTTCGGTTGTATCACCATTCTCAAGCTTATAAAAAT
ACAAGTACTAGTAATACAACTTTTTTATAAGCTTGAGAATGGTGATACAA
CCGAAATATATTGCTTGACTGTTTTTAAATTTTAAACTTTGAAAAACGGC
TTCAAATTATAACAATTCAATGACTTCATTCTTAATATACTGGACTAAAG
CATAGTGAAAAACAAAAGCTGCAAAGTCCAATTCGCACGCTTTTTCGAAG
TTGTCTTCTCTATCGCAGAATACGAGTTGATGTTCTTATATCTTTTTTTG
TTTTAGAAATTGGACACTGTCACTATTGGCGATCCATCAGAATCGTACAG
ACCAGAAAAGATCTCAAGAACTAAAAAGACTAAAGAACAATTTCGTAATT
ATGATGTATGGAAGTTTATTAGATAATTTCTATCCCCACTTTGTAGTTGA
TTGATTACATGTTTCCCTTTTTAAGAACGTCAAATATTTTGATTTTAAGC
CTAAAAATGTTCTTAACATGTTCTTATTTTCACCATTTTTTGAGCATTTT
TGCCCATTTTTCTAAGAAACTGGCTGTTTTAGAGTTGGCAAAGCCTTAAA
ATGTTCTTAACTTGTTCTTAACATGTCGGAGATGAGAAGCCTTATGTTCC
TATATAGTTTGTTCTTATAAAAAAACGTGTACTAGAAATCGATTCAGTGT
GATGGGTAAGAGTTGAATATGGACTGAAGTACAATGCTTTTATATTTACT
CATTTCAGGAGAATCTTCAAACAGATATGGTGAAGAAAACTTACCTTGAA
ATGCATGAGAAGCAATGCGTTCAATTTGTCAAAAAAATGGTAATTTCTTT
CTGTTTCCTTTCTTTCATTCTGTGAATTTCCATAGGGAAAATTATCGCTT
TCGTTTTCAGGACCTTATATATCGTCGAATTAACGATTTTATCGATGAAT
CTATCAATACATAACATATCGATAGACTTTCATCGATAGAAATTTAACGC
CCCTTAGAACCTCTAAGATCTCCAAACAACCGTCAACGTTTTTACAATTT
TAGGGGTTGTAAACACTTCGTTTCCTTTGAGGCAGGGGTGTAAGCACTTC
GTTTTCATCGAGGCAGGGTTGTAAACACTTCGTTTTCTTTGAGACAGGGT
TGTAAACACTTCGTTTTCTTTGAGGCAGGGATGTAAACACTTCGTTTTCT
TTGAGGCAGGGGTGTAAGCACTTCGTTTTAATCGAGGCAGGGGTGTAAAC
ACTTCGTTTCCTTTGAGGCAGGGGTGTAAGCACTTCGTTTTCATCGAGGC
AGGGTTGTAAACACTTCGTTTCCTTTGAGACAGGGTTGTAAACACTTCGT
TTCCTTTGAGGCAGGGGTGTAAGCACTTCGTTTTCATCGAGGCAGGGTTG
TAAACACTTCGTTTTCTTTGAGACAGGGTTGTAAACACTTCGTTTCCTTT
GAGGCAGGGGTGTAAGCACTTCGTTTTCATCGAGGCAGGGTTGTAAACAC
TTCGTTTTCTTTGAGACAGGGTTGTAAACACTTCGTTTTCTTTGAGGCAG
GGATGTAAACACTTCGTTTTCTTTGAGGCAGGGGTGTAAGCACTTCGTTT
TCATCGAGGCAGGGTTGTAAACACTTCGTTTTCTTTGAGGCAGGGATGTA
AACACTTCGTTTTCTTTGAGGCAGGGGTGTAAGCACTTCGTTCTCATCGA
GGCAGGGGTGTAAACACTTCGTTTTCTTTGAGGCAGGGGTGTAAGCGCTT
CGTTTTCATCGAGGCAGGAGTGTAAACACTTCATTTTCTTTGAGGCAGGG
GTGTAAGCACTTCGTTTTCATTGAGGCAGGGATGTAAACACTTCGTTTTT
ATTGAGGCAGGGGTGTAAACACTTCGTTTTCTTTGAGGCAGGGGTGTAAG
CACTTCGTTTTTATTGAGGCAGGGGTGTAAGCACTTCGTTTTCATTGAGT
CAGGGGTGTAAACACTTCGTTTTCTTTGAGGCAGGGGTGTAAGCACTTCG
TTTTCTTTGAGGCAGAGGTGTAAGCACTTCGTTTTCATTGAGGCAGGGGT
GTAAGCACTTTATTTTTAGAGACAGGGGTGTAAGCACTTCATTTTTTTTG
TTTTGTAGCATGAAAAATGGTGCGAGTTCAATCATGCAGAGATGACAATG
ATGGAAGCCATCATGTTATTGGATAATCTGGTGGACGAATCTGACCCTGA
TGTAAGTACCCATTAAGTAAGCCTGAAATAGTATGTTTTTTTACAGGCAG
GTTGGATGATTATCATATGGGTGGCATAATGAAACTTTTGGCACTAAATC
AAATGTTGTCACTTCCTCCAGAGCTATTCATGCATAAATATCATTTCTTA
GATGATAAATTATCATTTTTCCTTTTTTACAGACGGACCTACCAAACTCA
ATACATGCATTTCAAACAGCTGAACGTATTCGAGAAAGATACCCCGATGA
TGGTATGTAATACCTAAAATATTTTTTGCTGTATGTGTCATATTGTGGCT
CTGAATGTATTATAGATATAGAAACTAATTTTGTTGGAGGATGAGCAGAA
GCCTAAACTGAAAAGTTTTCTTATAAGCCAAGCTTTGCCTAAATTTTCCT
TTATAAAATCTTTTTTCTTGCCACTGATTTTACAAAATCCTATCACATTT
TCACCTCAGACTGGTTGCACCTGACTGGATTGATCCATGATGCTGGGAAG
GTGATGGCGTTATGGGGCGAACCACAATGGGCGGTTGTGGGTGATACTTT
TCCTATTGGGTGCCGCTTTCAAGAAGAATGTGTTTTTCATCGATTCTTCG
AGATGAACCCTGATTACAATAACTCGAACTATAAGTAAGGCATTTATTTG
ATTATTACCATCATACAGTTTCTTGATTTTTCGATAACCCAAAGAGTTTG
TGAGGTCTACAAAGCGATTTTAACTTGGTCACGTCAATCATTGACAAATC
TGTTTGTTCGTCTGCTTGACGTGGTTACGTTGATTCAAAAGGTGGTTTAC
CATCAACATGATCTGACAACCTGCTTCCATTGTCTTCACCACTTACTCGG
ATCGAGCAGCTGCTCGTGTTGTTTATGTTGTTAAGAATGAGACTAGTGTA
GTTTTAGGTATTTAAAGTTTCACACCGTCTATATGAACGACAATCACCAT
AAGATATGTAGAAAAGCTTAGAATAAAAGATATTTAGAATCTCATATTGT
ATTCTTCAACAAATCAACTTTTACTTTCTGTTTACTTTAGCACAAAGAAT
GGTATTTACAAAGAACATTGTGGATTGGACAATGTCACGATGTCATGGGG
CCACGATGGTAAACACTGGCTTTTCATCTAGTTTGGGAAAACACAAGAAG
AAGCCTTCAATTATACGAAGAACAGTTTTTTTTGTTCAGTGGATGTTCTC
CAACGTTTACCTCATAGAATATATTTGCCAACATAGGGGATAAAAAAGGA
TTTTCGAACGTTACGTCACAATTTTTGACGAAACAAATGGCTAAAAACAA
GATAAAACTTAATCCGAAAATTGATTTTGCCATGGATCTATGTGGAGTCA
GATCACAAACAACAAAATTTTAAATTTTTTGAAAAACTAATATTTCGCTT
CACAACAAAAGTATCGTCAGAGTGATAGTAATACTGTAAATGTGAACAGT
TTTTTAGAAAATCAAAAATCAACTAGCGGAAGAAATTTAAGTCTTTAGAG
GCTTTCAAACCCGAGTTCATTTCTGGATTTTTGATTTTTCTAGAAAATTG
TTTACACTCTGACGATGCTTTTGTTGTGAAGCGAAATATTAGTTTTTCAA
ACAAAAAAAATTAGTTGTTTGTGATCTGACTTCACATAGATCCATGGCAA
AATCAATCTTCGGATTAAGTTCTATCTTGTTTTTACTGAAGCTGTCATAT
GGTCAAAGTTTTTAAATGACTAAAAAAGATCACGTGACGTTCAAAAATCT
ATGCCACCTCACCTAGCCGGGCCAGCCTGCCTCCATGTGAAAAAACCCCT
AATAAAAGACATAAAATCATTATAATACCCCACATTATTATTCTGCATCT
ACCTTTAGAATACATGTACCAACTTTTGAAGTTCAACAAAACAAGCTTAC
CTGAAGAAGCTCTTTATCGCATTCGTTACCATTCCNGGGCAATAGCTCGG
TAGTTTGCTGGATTTTCCTTGTCACCTTTCTTGAAGATCGGGGTAACAAT
CATCTTAGCAAAGTGAGATGGAGTATCTACTGAATCCAAGATCTTATTAA
AAATAATCTTGAGCGCATCAACGATTGTGTTTCCACCTGCGNCATGGGAG
TGACGCGTACATGAATTTGTGTGATGAGAAAGATATCAAGTGGCAAGAAA
AGTTGAAGGAATTCAGGTAAGTAATAATTAATGATACAACCCTGTTTCTA
AGCACGAAAAAATTACCAACTTTTAAGTTTGAATTTCTTTTGTAAAACCT
GCACTTCGAGTTTGATACCTTTCCTTATCACTAGAAATATAATAAGTCTG
AGTGGAAAAGGAGCTATTAAGAACAGCCACTTTAAACGCACAAATCACAA
CCCAATCATACTGTACATAGAAAGTGACTTGACTTGACTTATCAGCACAC
CTCTGGTTGAGGCTTCGCTCACTTGTGAACTTTCTCTCGCCATCTGGTTC
TATCACGTGCGTATCGTTCGGCCGTTGCTAATGGAAGACCTGTGTCTTCC
CTGATTTTATCTTGCCATTTTTTTGCAGGTCTACCTCTTCTTCATGTGCC
TTGGAATTCATTTTTCAAACATATTTTAGTTCTTGGAGCTCATCCATCAC
GAACTCCAGGAATAGGTTGAACAGCACAGCGTTGGTGATAGCAAGCACCC
CTGTCTAACACCTACTATCACTTCAAACCAGTTGGTTAATTTACCATCTA
CGTTGATAGCCNTTTGTTATTTTTAAGGGAGGCGATAGCTTTTTTAATAT
CCTCTTTCAATATTATGAAATCGTCTTCCTCGGTAAGAACAGGATGGTGA
TTTTGGATCATTTCTAGCGTCTGTTCGTTTCTGGGAAATTCCGTGTTCAA
ATGGTTTTTGAAGTGCTTTTCCCAAATTTCAAGGACTTCGGCTGGGTCTG
TGGTTCCCGTTTGCACCTTTTAGGGCAGGGACATTTTTTCTTGGTTTTCA
TTTTCGAAAGCCTACAACCTCCTTTGTTGCTTTATTTAAAGTTTCGACAA
ATTTGTTGTATGATGCCTCGACTGAGCTGTTGAAATAGCCACCGATCTTA
ATCTTGAACTCTTTAGCGTATTCCTCAGTTTTTAGTTTGGGTATGTCGTA
TCTCTTTGGGGGAGTTTTGAATTTCTTTCTTTGGGGTAGCTGTAGTTTGT
ATTTTGCCATTAATAGCGAATGATCTGAGTTCACATCAGCAGAATTGAAT
ACTCTACAACTTTTGATACAGGACTTTTGGTCAGCCGGTACAAGGATGTA
ATCAATCTGATTTTTGGTTCTCCCGTCTGGTGAGACCCACGTTATCAATC
TTTGAAGTTTCTGTTTATACATAGTATTCATGATTGACAATGTGTTGGCT
GCACAGAAGTTCATTAGCCTCTCTCCTCCTTCGTTCATTTGGCCTACTCC
ATAAACACCACAGATTCCTGTCCAAAGTTCGCCTGTATGTCGACCAACCT
TTCCGTTAAAATCGCCAAGCACTACAAATCTAGAGTTACGTGGTAATGCG
TTAATCTGCTGCTGCAACAAGTTGGAAGAAATCCTCTTTGGTATCATCGT
TGTAAGATGAGTCGGGAGTGTTTTGGTATTCAATTGTATGGACATGATTC
GCTCATTGACAAGGGCATATCCACACATGTGCTGTGAGAGCTCTTTGGTG
ATGAATATGACATCACCTTGGCGATGGATATTGTCCTTTCTGCCTGACTG
CACGATAACGTAATCATTCATTTCGAATGCTTCTTCGATCTCGTTAGTCC
AGTGGGTTTCAGATACTCCAAGTATTTCTTCAGTTAAGGCTTCCAGTTTG
AAATCATCATCGTCGTCGTCACTATTGTAGAGTGTCCTTATGTTCCAAGT
AGCTAAATTTATAAGTTTATTTTCATCCGGCAGATTTTCGCACCCCCCTG
ATGTTAACCGGGACTGGGGGCCTTCTTCGAACAACTTTATACATAGAAAG
TTACCCTTCGGAAAAAGAAAAGAAAAAACGAATCCCATTCCATATTTTTC
TTTTTCCAGTACGTTCGATTTGTATTCGAAAGCAGAATCGATTCCAGACG
TGAAAGCATTGACACCTTACTATCAATCACTCATTGACAAATACATTCCT
GGTGTTCTGAGATGGTAGACCGCACCAATCATTGACCTATGGTTAAGGCG
AAGTCTTGAAAATTCGTTGTACTTTCGTCAAACTAAACAATGAAGTTGGC
CTAGTTAATTTTTTCTTCCGTAAAAAAGACAATTTTTATACACCCTTTTA
TTTTTAAATTTTATTCACCAGTTTTATTTTTAAATTTTTTATTCACCCGT
TTTATAAATAAATCTCACTATCGTAGTTTGGTAATTCCTCATGAAGATTA
ATTTTCTAATCGCAACTTTGAGGTTTTGAAAATCATGGCTGGCTTTTATT
TACACGTATTATTTTTTAAACGTATCCATTTTAATTTAAGTAGTACATAC
AGCTCCAGGGGAGGTATAAACCAAGTAACCCTTTGGCCAACTGACCGGTG
TGTCACCGGGTTCGAAAGAATGATGGATTCCCCTACTTCCTCTGTAGATA
CACTTCCTATATATCTATATAAGAAACTCTTTTCGCTAGAGGATGAGCAG
AAGCCTAACCGTGCGACTGATTTTTCTAGTTAAGTGTTTTTTGCAACCCA
GCCTCTACTCTTTGATGTGGAAATAGGTAGAATATGTACAGTAGCTTTTC
CCCATATTTGCCTGAGTATCCCGCCTCCCCTGGTTTTAGCTATGCAAATG
CTGTGTTTTTCAGGCATGCATGATTTGTTTCAAATAATTTACCTTCTTAT
CTACAATCAGCACCGAAATATATTGGCAATTTTGGGTATTTTAACATTTT
TCAGAATTTAAAGGTCGAAGCGAGAATTTTCACTTTGCTTCATCGAATTT
TTCGATTTAGGAGGGGTTTTAAGTGGCTTCCAGGCTATATTCTCTGCCTT
ATTGGAACATTTTTGAGCTTTTAGATCCTAAGATCCTAAGGTTTTAAGTC
TTAAATCTCACGTTAAAACTTAGAGTTAAAACTCTACTTCCGAACTGTAC
TTCAAAGCACTTAAAATCACTTGCGGTTTTAAAGTTTCGAGGGAATTCCC
CTTTTTTGCCAAATATTTCTTCGCCGATTGTAGTGTAAATAGACATCTTA
CGAGTCATTGCTTTTCTCAAGTATTTTCATTTAATACAATCGTGTTTTAA
ATACTGTAACTGTGTTAATAATTTGATCAAATTTGGATCAATTCTCGTCA
TATTTCTTTGTTTCCTGGGTGAGGTTCATTTGCTTCTTTCTTTTTCTTTT
GCGCAATAATGTAATATAAGCACACAAAATATATTTCTACTCTGTTTTGA
TCTTTATTTTATCAGGACACCCTGTATCTAATCGTTCGTTATATGAATCA
ATGGAGAAAATGTTCATTAATTCGAGTAATTCTCAGTTATTTCTACACGA
TTTCCATTTGAAAATGTGATGAGAAAACCGTATTCTATCTCATTTTGTTC
GTTGTTGTATTTTATTTTATTCAATTGTATCAAATGGATTCTAAACAAAG
GAATATAAGTTATCGTGTGATTA

Coding sequence (CDS) from alignment at sc0000091:240075..248197-

>TCONS_00009275 ID=TCONS_00009275|Name=TCONS_00009275|organism=Clytia hemisphaerica|type=CDS|length=5592bp|location=Sequence derived from alignment at sc0000091:240075..248197- (Clytia hemisphaerica)
AATACATGTACCAACTTTTGAAGTTCAACAAAACAAGCTTACCTGAAGAA
GCTCTTTATCGCATTCGTTACCATTCCNGGGCAATAGCTCGGTAGCACAA
AGAATGGTATTTACAAAGAACATTGTGGATTGGACAATGTCACGATGTCA
TGGGGCCACGATGACTGGTTGCACCTGACTGGATTGATCCATGATGCTGG
GAAGGTGATGGCGTTATGGGGCGAACCACAATGGGCGGTTGTGGGTGATA
CTTTTCCTATTGGGTGCCGCTTTCAAGAAGAATGTGTTTTTCATCGATTC
TTCGAGATGAACCCTGATTACAATAACTCGAACTATAAACGGACCTACCA
AACTCAATACATGCATTTCAAACAGCTGAACGTATTCGAGAAAGATACCC
CGATGATGCATGAAAAATGGTGCGAGTTCAATCATGCAGAGATGACAATG
ATGGAAGCCATCATGTTATTGGATAATCTGGTGGACGAATCTGACCCTGA
TGAGAATCTTCAAACAGATATGGTGAAGAAAACTTACCTTGAAATGCATG
AGAAGCAATGCGTTCAATTTGTCAAAAAAATGAAATTGGACACTGTCACT
ATTGGCGATCCATCAGAATCGTACAGACCAGAAAAGATCTCAAGAACTAA
AAAGACTAAAGAACAATTTCGTAATTATGATATGAGGGTTTTGATTCCGA
ATACATGTACCAACTTTTGAAGTTCAACAAAACAAGCTTACCTGAAGAAG
CTCTTTATCGCATTCGTTACCATTCCNGGGCAATAGCTCGGTAGCACAAA
GAATGGTATTTACAAAGAACATTGTGGATTGGACAATGTCACGATGTCAT
GGGGCCACGATGACTGGTTGCACCTGACTGGATTGATCCATGATGCTGGG
AAGGTGATGGCGTTATGGGGCGAACCACAATGGGCGGTTGTGGGTGATAC
TTTTCCTATTGGGTGCCGCTTTCAAGAAGAATGTGTTTTTCATCGATTCT
TCGAGATGAACCCTGATTACAATAACTCGAACTATAAACGGACCTACCAA
ACTCAATACATGCATTTCAAACAGCTGAACGTATTCGAGAAAGATACCCC
GATGATGCATGAAAAATGGTGCGAGTTCAATCATGCAGAGATGACAATGA
TGGAAGCCATCATGTTATTGGATAATCTGGTGGACGAATCTGACCCTGAT
GAGAATCTTCAAACAGATATGGTGAAGAAAACTTACCTTGAAATGCATGA
GAAGCAATGCGTTCAATTTGTCAAAAAAATGAAATTGGACACTGTCACTA
TTGGCGATCCATCAGAATCGTACAGACCAGAAAAGATCTCAAGAACTAAA
AAGACTAAAGAACAATTTCGTAATTATGATATGAGGGTTTTGATTCCGAA
TACATGTACCAACTTTTGAAGTTCAACAAAACAAGCTTACCTGAAGAAGC
TCTTTATCGCATTCGTTACCATTCCNGGGCAATAGCTCGGTAGCACAAAG
AATGGTATTTACAAAGAACATTGTGGATTGGACAATGTCACGATGTCATG
GGGCCACGATGACTGGTTGCACCTGACTGGATTGATCCATGATGCTGGGA
AGGTGATGGCGTTATGGGGCGAACCACAATGGGCGGTTGTGGGTGATACT
TTTCCTATTGGGTGCCGCTTTCAAGAAGAATGTGTTTTTCATCGATTCTT
CGAGATGAACCCTGATTACAATAACTCGAACTATAAACGGACCTACCAAA
CTCAATACATGCATTTCAAACAGCTGAACGTATTCGAGAAAGATACCCCG
ATGATGCATGAAAAATGGTGCGAGTTCAATCATGCAGAGATGACAATGAT
GGAAGCCATCATGTTATTGGATAATCTGGTGGACGAATCTGACCCTGATG
AGAATCTTCAAACAGATATGGTGAAGAAAACTTACCTTGAAATGCATGAG
AAGCAATGCGTTCAATTTGTCAAAAAAATGAAATTGGACACTGTCACTAT
TGGCGATCCATCAGAATCGTACAGACCAGAAAAGATCTCAAGAACTAAAA
AGACTAAAGAACAATTTCGTAATTATGATATGAGGGTTTTGATTCCGAAT
ACATGTACCAACTTTTGAAGTTCAACAAAACAAGCTTACCTGAAGAAGCT
CTTTATCGCATTCGTTACCATTCCNGGGCAATAGCTCGGTAGCACAAAGA
ATGGTATTTACAAAGAACATTGTGGATTGGACAATGTCACGATGTCATGG
GGCCACGATGACTGGTTGCACCTGACTGGATTGATCCATGATGCTGGGAA
GGTGATGGCGTTATGGGGCGAACCACAATGGGCGGTTGTGGGTGATACTT
TTCCTATTGGGTGCCGCTTTCAAGAAGAATGTGTTTTTCATCGATTCTTC
GAGATGAACCCTGATTACAATAACTCGAACTATAAACGGACCTACCAAAC
TCAATACATGCATTTCAAACAGCTGAACGTATTCGAGAAAGATACCCCGA
TGATGCATGAAAAATGGTGCGAGTTCAATCATGCAGAGATGACAATGATG
GAAGCCATCATGTTATTGGATAATCTGGTGGACGAATCTGACCCTGATGA
GAATCTTCAAACAGATATGGTGAAGAAAACTTACCTTGAAATGCATGAGA
AGCAATGCGTTCAATTTGTCAAAAAAATGAAATTGGACACTGTCACTATT
GGCGATCCATCAGAATCGTACAGACCAGAAAAGATCTCAAGAACTAAAAA
GACTAAAGAACAATTTCGTAATTATGATATGAGGGTTTTGATTCCGAATA
CATGTACCAACTTTTGAAGTTCAACAAAACAAGCTTACCTGAAGAAGCTC
TTTATCGCATTCGTTACCATTCCNGGGCAATAGCTCGGTAGCACAAAGAA
TGGTATTTACAAAGAACATTGTGGATTGGACAATGTCACGATGTCATGGG
GCCACGATGACTGGTTGCACCTGACTGGATTGATCCATGATGCTGGGAAG
GTGATGGCGTTATGGGGCGAACCACAATGGGCGGTTGTGGGTGATACTTT
TCCTATTGGGTGCCGCTTTCAAGAAGAATGTGTTTTTCATCGATTCTTCG
AGATGAACCCTGATTACAATAACTCGAACTATAAACGGACCTACCAAACT
CAATACATGCATTTCAAACAGCTGAACGTATTCGAGAAAGATACCCCGAT
GATGCATGAAAAATGGTGCGAGTTCAATCATGCAGAGATGACAATGATGG
AAGCCATCATGTTATTGGATAATCTGGTGGACGAATCTGACCCTGATGAG
AATCTTCAAACAGATATGGTGAAGAAAACTTACCTTGAAATGCATGAGAA
GCAATGCGTTCAATTTGTCAAAAAAATGAAATTGGACACTGTCACTATTG
GCGATCCATCAGAATCGTACAGACCAGAAAAGATCTCAAGAACTAAAAAG
ACTAAAGAACAATTTCGTAATTATGATATGAGGGTTTTGATTCCGAATAC
ATGTACCAACTTTTGAAGTTCAACAAAACAAGCTTACCTGAAGAAGCTCT
TTATCGCATTCGTTACCATTCCNGGGCAATAGCTCGGTAGCACAAAGAAT
GGTATTTACAAAGAACATTGTGGATTGGACAATGTCACGATGTCATGGGG
CCACGATGACTGGTTGCACCTGACTGGATTGATCCATGATGCTGGGAAGG
TGATGGCGTTATGGGGCGAACCACAATGGGCGGTTGTGGGTGATACTTTT
CCTATTGGGTGCCGCTTTCAAGAAGAATGTGTTTTTCATCGATTCTTCGA
GATGAACCCTGATTACAATAACTCGAACTATAAACGGACCTACCAAACTC
AATACATGCATTTCAAACAGCTGAACGTATTCGAGAAAGATACCCCGATG
ATGCATGAAAAATGGTGCGAGTTCAATCATGCAGAGATGACAATGATGGA
AGCCATCATGTTATTGGATAATCTGGTGGACGAATCTGACCCTGATGAGA
ATCTTCAAACAGATATGGTGAAGAAAACTTACCTTGAAATGCATGAGAAG
CAATGCGTTCAATTTGTCAAAAAAATGAAATTGGACACTGTCACTATTGG
CGATCCATCAGAATCGTACAGACCAGAAAAGATCTCAAGAACTAAAAAGA
CTAAAGAACAATTTCGTAATTATGATATGAGGGTTTTGATTCCGAATACA
TGTACCAACTTTTGAAGTTCAACAAAACAAGCTTACCTGAAGAAGCTCTT
TATCGCATTCGTTACCATTCCNGGGCAATAGCTCGGTAGCACAAAGAATG
GTATTTACAAAGAACATTGTGGATTGGACAATGTCACGATGTCATGGGGC
CACGATGACTGGTTGCACCTGACTGGATTGATCCATGATGCTGGGAAGGT
GATGGCGTTATGGGGCGAACCACAATGGGCGGTTGTGGGTGATACTTTTC
CTATTGGGTGCCGCTTTCAAGAAGAATGTGTTTTTCATCGATTCTTCGAG
ATGAACCCTGATTACAATAACTCGAACTATAAACGGACCTACCAAACTCA
ATACATGCATTTCAAACAGCTGAACGTATTCGAGAAAGATACCCCGATGA
TGCATGAAAAATGGTGCGAGTTCAATCATGCAGAGATGACAATGATGGAA
GCCATCATGTTATTGGATAATCTGGTGGACGAATCTGACCCTGATGAGAA
TCTTCAAACAGATATGGTGAAGAAAACTTACCTTGAAATGCATGAGAAGC
AATGCGTTCAATTTGTCAAAAAAATGAAATTGGACACTGTCACTATTGGC
GATCCATCAGAATCGTACAGACCAGAAAAGATCTCAAGAACTAAAAAGAC
TAAAGAACAATTTCGTAATTATGATATGAGGGTTTTGATTCCGAATACAT
GTACCAACTTTTGAAGTTCAACAAAACAAGCTTACCTGAAGAAGCTCTTT
ATCGCATTCGTTACCATTCCNGGGCAATAGCTCGGTAGCACAAAGAATGG
TATTTACAAAGAACATTGTGGATTGGACAATGTCACGATGTCATGGGGCC
ACGATGACTGGTTGCACCTGACTGGATTGATCCATGATGCTGGGAAGGTG
ATGGCGTTATGGGGCGAACCACAATGGGCGGTTGTGGGTGATACTTTTCC
TATTGGGTGCCGCTTTCAAGAAGAATGTGTTTTTCATCGATTCTTCGAGA
TGAACCCTGATTACAATAACTCGAACTATAAACGGACCTACCAAACTCAA
TACATGCATTTCAAACAGCTGAACGTATTCGAGAAAGATACCCCGATGAT
GCATGAAAAATGGTGCGAGTTCAATCATGCAGAGATGACAATGATGGAAG
CCATCATGTTATTGGATAATCTGGTGGACGAATCTGACCCTGATGAGAAT
CTTCAAACAGATATGGTGAAGAAAACTTACCTTGAAATGCATGAGAAGCA
ATGCGTTCAATTTGTCAAAAAAATGAAATTGGACACTGTCACTATTGGCG
ATCCATCAGAATCGTACAGACCAGAAAAGATCTCAAGAACTAAAAAGACT
AAAGAACAATTTCGTAATTATGATATGAGGGTTTTGATTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005188XLOC_005188Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009275-exon-sc0000091-1575043694:247927..248197TCONS_00009275-exon-sc0000091-1575043694:247927..248197Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1575043694:247443..247541TCONS_00009275-exon-sc0000091-1575043694:247443..247541Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1575043694:247009..247089TCONS_00009275-exon-sc0000091-1575043694:247009..247089Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1575043694:245647..245739TCONS_00009275-exon-sc0000091-1575043694:245647..245739Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1575043694:245396..245465TCONS_00009275-exon-sc0000091-1575043694:245396..245465Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1575043694:245014..245188TCONS_00009275-exon-sc0000091-1575043694:245014..245188Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1575043694:244540..244607TCONS_00009275-exon-sc0000091-1575043694:244540..244607Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1575043694:243482..243789TCONS_00009275-exon-sc0000091-1575043694:243482..243789Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1575043694:240075..241638TCONS_00009275-exon-sc0000091-1575043694:240075..241638Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1510915933:247927..248197TCONS_00009275-exon-sc0000091-1510915933:247927..248197Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1510915933:247443..247541TCONS_00009275-exon-sc0000091-1510915933:247443..247541Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1510915933:247009..247089TCONS_00009275-exon-sc0000091-1510915933:247009..247089Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1510915933:245647..245739TCONS_00009275-exon-sc0000091-1510915933:245647..245739Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1510915933:245396..245465TCONS_00009275-exon-sc0000091-1510915933:245396..245465Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1510915933:245014..245188TCONS_00009275-exon-sc0000091-1510915933:245014..245188Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1510915933:244540..244607TCONS_00009275-exon-sc0000091-1510915933:244540..244607Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1510915933:243482..243789TCONS_00009275-exon-sc0000091-1510915933:243482..243789Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1510915933:240075..241638TCONS_00009275-exon-sc0000091-1510915933:240075..241638Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1491911889:247927..248197TCONS_00009275-exon-sc0000091-1491911889:247927..248197Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1491911889:247443..247541TCONS_00009275-exon-sc0000091-1491911889:247443..247541Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1491911889:247009..247089TCONS_00009275-exon-sc0000091-1491911889:247009..247089Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1491911889:245647..245739TCONS_00009275-exon-sc0000091-1491911889:245647..245739Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1491911889:245396..245465TCONS_00009275-exon-sc0000091-1491911889:245396..245465Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1491911889:245014..245188TCONS_00009275-exon-sc0000091-1491911889:245014..245188Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1491911889:244540..244607TCONS_00009275-exon-sc0000091-1491911889:244540..244607Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1491911889:243482..243789TCONS_00009275-exon-sc0000091-1491911889:243482..243789Clytia hemisphaericaexon
TCONS_00009275-exon-sc0000091-1491911889:240075..241638TCONS_00009275-exon-sc0000091-1491911889:240075..241638Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009275-proteinTCONS_00009275-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:240075..248197 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.306115	0.358303	0.465302	0.381246	1.27204	1.02018	10.3158	11.3637	56.4945	30.4854	117.202	66.0794	46.4088	42.7163	61.0029	77.6908	15.342	14.1133	190.647	146.643	11.3385	12.556	7.36554	6.93087	25.5436	33.5058	6.28368	8.36823	56.9477	46.0198
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007828Inositol_oxygenase
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0050113inositol oxygenase activity
Vocabulary: Biological Process
TermDefinition
GO:0019310inositol catabolic process
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019310 inositol catabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0050113 inositol oxygenase activity
molecular_function GO:0005506 iron ion binding
Blast
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BLAST of TCONS_00009275 vs. Swiss-Prot (Human)
Match: MIOX (Inositol oxygenase OS=Homo sapiens GN=MIOX PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 2.516e-81
Identity = 129/219 (58.90%), Postives = 154/219 (70.32%), Query Frame = 2 
Query:  284 VTIG-DPSESYRPEKISRTKKTKEQFRNYDENLQTDMVKKTYLEMHEKQCVQFVKKMHEKWCEFNHAEMTMMEAIMLLDNLVDESDPDTDLPNSIHAFQTAERIRERYPDDDWLHLTGLIHDAGKVMALWGEPQWAVVGDTFPIGCRFQEECVF-HRFFEMNPDYNNSNYNTKNGIYKEHCGLDNVTMSWGHDEYMYQLLKFNKTSLPEEALYRIRYHS 934
            VT+G DPS  YRP+      K K  FRNY      D V  TY  MH  Q V FV+  H ++  F++ +MT+MEA+ LLD LVDESDPD D PNS HAFQTAE IR+ +PD DW HL GL+HD GKV+AL+GEPQWAVVGDTFP+GCR Q   VF    F+ NPD  +  Y+T+ G+Y+ HCGLD V MSWGHDEYMYQ++KFNK SLP EA Y IR+HS
Sbjct:    3 VTVGPDPSLVYRPDVDPEVAKDKASFRNYTSGPLLDRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKVLALFGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGHDEYMYQVMKFNKFSLPPEAFYMIRFHS 221
The following BLAST results are available for this feature:
BLAST of TCONS_00009275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIOX2.516e-8158.90Inositol oxygenase OS=Homo sapiens GN=MIOX PE=1 SV... [more]
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