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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009273 ID=TCONS_00009273|Name=TCONS_00009273|organism=Clytia hemisphaerica|type=transcript|length=4249bpRun BLAST on NCBI transcript from alignment at sc0000091:214243..229369- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009273 ID=TCONS_00009273|Name=TCONS_00009273|organism=Clytia hemisphaerica|type=transcript|length=15127bp|location=Sequence derived from alignment at sc0000091:214243..229369- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009273 vs. Swiss-Prot (Human)
Match: MA2A1 (Alpha-mannosidase 2 OS=Homo sapiens GN=MAN2A1 PE=1 SV=2) HSP 1 Score: 930.243 bits (2403), Expect = 0.000e+0 Identity = 502/1148 (43.73%), Postives = 704/1148 (61.32%), Query Frame = 2
Query: 68 AIFGSCLFFFVVMTMYLLLDQFQITIDKQKFIEETQNVEKSVNDIGRDINKLEEEINSNDRIIDSMKDRV-----QVKDN-EGAAPDF----GGNSEPSE-------GMCSFTNTPSGDKQDIRMLXXXXXXXXXXXXGGVWKQGWDISYSRNAFDNKKLKVFVMPHSHNDPGWLKTVVSYFNDQTVHIISNIVDALAKDEKRKFIWAETSYFKMWWDQTSPMRRQLAQEQIRNGQLEIVTGGWVMNDESNPHYWNMLDQMMEGHIWMQQHIGVKPKYGWAIDPFGYSSTMPYLLKRMGFEGMLIQRVHYNVKKYLAKKKNLEFMWRQNWDHGKSTDIFTHVMPFYSYDVPHTCGPNPKVCCQFDFRRLSGGGMFCPWHIPPKRIDDHNVRERAETLLDQYKKKAQLYRSNVVLAPLGDDFRYDKEFEVREQFSNYEKLMNYVNSHPELNAEIKFGTLQDYFHAVFEREGVEPGDHPPGFPTLGGDFFTYADRNDHYWSGYYTSRSFFKHMDRELMAHLRAAEII--FSLANAHSQHHGNFEGEDLFHKLSGARKELALFQHHDGVTGTAKDHVVTDYGSRMHRAIKDSVAVMAKSANFLLTTDKNQFKDSSEGVQFFKFSETRGNFDSIPTKNTFIVSNSKTSVCFYNSLAQDRRQTVFLHISEPIVQVTTPDGKVIPHQVSLLWKDSDNLISSKYLLSFVADIPALGLARYEIKKDDSGQESFATTTTYNTRRSYENRHI-TVKSGSGKE--IKLKNHHFEATFDVESGLLTDMKLK-DRPLHKMQIKFKKYGTTGRMDKSGAYLFMPDGQATTLNSLNQPVI-VTEGKIFSEVRVKTEYVLQIVRVYHGQVDEAKSLKIENILDIRQTSNFELVMRIESDLKNKEKEFFTDLNGFQIQRRKTLAKLPLQANFYPAPALVFLQDGTSRLTLQTQQSNGVASLETGYLEVVMDRRLMQDDNRGLGQGVRDNKVTPSFFNLLLEDFDTPKQQVAKPPPVAYQSSLGITLSHQIQHPIFTF---FIASTVSGQ-QYLPLARGLKIQLPCDTHLLNLKTLPKNIKDEPGDVSTLLLHRIGYDCHFKSH-----CS--ERRQTFQDVFDPLTVNDLKETTLSLLHLKKDMNPQTRIDVPPMEIKAFKLKLK 3406
+FGS +F V+ ++YL+LD+ + + E + ++ + I+ LE + N+ II +++D V V+D + + +F G + PS+ C F + D++MLD + I FD+ DGGVWKQG+DI+Y N +D + L+VFV+PHSHNDPGWLKT YF D+T +I +N+V L +D +RKFIW+E SY WWD ++ + I NGQLEIVTGGWVM DE+ PHY+ ++DQ++EGH W++ +IGVKP+ GWAIDPFG+S TM YLL R G MLIQRVHY VKK+ A K LEF WRQNWD G TDI H+MPFYSYD+PHTCGP+PK+CCQFDF+RL GG CPW +PP+ I NV+ RA LLDQY+KK++L+R+ V+LAPLGDDFRY + E QF NY++L +Y+NS + +I+FGTL D+F A+ + + + FP L GDFFTYADR+DHYWSGY+TSR F+K MDR + +HLRAAEI+ F+L AH F L+ L+ AR+ L LFQHHD +TGTAKD VV DYG+R+ ++ ++ SA L+ DK + DS F + + + DS+P KN +S + YN L QDR V +++S P VQV + GK + QVS +W ++ + + Y +SF A IP LGL Y+I + S A Y + E+ I T+K+ E I L+N FD ++GL+ M K D H++ ++F YGTT + DKSGAYLF+PDG A P + VT G+I+SEV ++V VR+YH Q E +S+++ NI+DIR+ N E+ M+I SD+K++ + F+TDLNG+QIQ R TL+KLPLQAN YP + ++QD RLTL + QS GV+SL +G +EV+MDRRLMQDDNRGL QG++DNK+T + F +LLE + K V+Y S L S + HP+ F + T+ Q ++ PL LPCD HL+NL+T+ + + + + L+LHR G+DC F S CS + + Q + + V L ++LSL+H + I++ PMEI F+++L+
Sbjct: 8 TVFGSAIFCVVIFSLYLMLDRGHLDYPRNPR-REGSFPQGQLSMLQEKIDHLERLLAENNEIISNIRDSVINLSESVEDGPKSSQSNFSQGAGSHLLPSQLSLSVDTADCLFASQSGSHNSDVQMLDVYSLISFDNPDGGVWKQGFDITYESNEWDTEPLQVFVVPHSHNDPGWLKTFNDYFRDKTQYIFNNMVLKLKEDSRRKFIWSEISYLSKWWDIIDIQKKDAVKSLIENGQLEIVTGGWVMPDEATPHYFALIDQLIEGHQWLENNIGVKPRSGWAIDPFGHSPTMAYLLNRAGLSHMLIQRVHYAVKKHFALHKTLEFFWRQNWDLGSVTDILCHMMPFYSYDIPHTCGPDPKICCQFDFKRLPGGRFGCPWGVPPETIHPGNVQSRARMLLDQYRKKSKLFRTKVLLAPLGDDFRYCEYTEWDLQFKNYQQLFDYMNSQSKFKVKIQFGTLSDFFDALDKADETQRDKGQSMFPVLSGDFFTYADRDDHYWSGYFTSRPFYKRMDRIMESHLRAAEILYYFALRQAHKYKINKFLSSSLYTALTEARRNLGLFQHHDAITGTAKDWVVVDYGTRLFHSLMVLEKIIGNSAFLLILKDKLTY-DSYSPDTFLEMDLKQKSQDSLPQKNIIRLSAEPRYLVVYNPLEQDRISLVSVYVSSPTVQVFSASGKPVEVQVSAVWDTANTISETAYEISFRAHIPPLGLKVYKILESASSNSHLADYVLYKNK--VEDSGIFTIKNMINTEEGITLENSFVLLRFD-QTGLMKQMMTKEDGKHHEVNVQFSWYGTTIKRDKSGAYLFLPDGNAKPYVYTTPPFVRVTHGRIYSEVTCFFDHVTHRVRLYHIQGIEGQSVEVSNIVDIRKVYNREIAMKISSDIKSQNR-FYTDLNGYQIQPRMTLSKLPLQANVYPMTTMAYIQDAKHRLTLLSAQSLGVSSLNSGQIEVIMDRRLMQDDNRGLEQGIQDNKITANLFRILLEKRSAVNTEEEK-KSVSYPSLLSHITSSLMNHPVIPMANKFSSPTLELQGEFSPLQSS----LPCDIHLVNLRTIQSKVGNGHSNEAALILHRKGFDCRFSSKGTGLFCSTTQGKILVQKLLNKFIVESLTPSSLSLMHSPPGTQNISEINLSPMEISTFRIQLR 1144 The following BLAST results are available for this feature:
BLAST of TCONS_00009273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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