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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009266 ID=TCONS_00009266|Name=TCONS_00009266|organism=Clytia hemisphaerica|type=transcript|length=2294bpRun BLAST on NCBI protein sequence of TCONS_00009266-protein >TCONS_00009266-protein ID=TCONS_00009266-protein|Name=TCONS_00009266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=748bp RFYTYGNLPLEGHLEKITEGVLNHYQKIDPQTEIPLEPKWTSPKEVTLHCRun BLAST on NCBI transcript from alignment at sc0000091:173568..202625- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009266 ID=TCONS_00009266|Name=TCONS_00009266|organism=Clytia hemisphaerica|type=transcript|length=29058bp|location=Sequence derived from alignment at sc0000091:173568..202625- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:173568..202625- >TCONS_00009266 ID=TCONS_00009266|Name=TCONS_00009266|organism=Clytia hemisphaerica|type=CDS|length=49434bp|location=Sequence derived from alignment at sc0000091:173568..202625- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009266 vs. Swiss-Prot (Human)
Match: PREP (Presequence protease, mitochondrial OS=Homo sapiens GN=PITRM1 PE=1 SV=3) HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0 Identity = 335/771 (43.45%), Postives = 497/771 (64.46%), Query Frame = 2
Query: 2 RFYTYGNLPLEGHLEKITEGVLNHYQKIDPQTEIPLEPKWTSPKEVTLHCAHDQLVPDPHKQCMVAVSYMMDYSEDPFESFTLGLISALLVSGPNSPFYQALIESNIGSDYSPVLGLDTYTKHPTFSVGLQGLAENDIDKVVEIIHQTFQDVYRDGFDAARIESLLHSIELGLKHQSSNFGLHLIMGLNSSWNQDKNPLRLLELNKQVERLQQVLATDESFLQNKIKMCFLDNTHRLTLTMKPQDGFNQKKDEKESELLQKKIKELTPADIEKLFEQGKILENLQNQDEDISVLPKMTLSDIKKNIIKTGVDHSF-VDNVQLQTSEQPTNGVTYFRSIATTSSLPYVLKPFLPLFCNVLTKMGTTSHGYKDLAQQIELHTGGISASPHLVTDHSDMETFQQGILLSSHCLQRNIPPMFSLIGQIANQPTLNDPERLRTLVNSYANDLIMSVPQSGHMYXXXXXXXXXXXXXXXXELFSGLSQVQFMKQIAENLDCDDVIENLIKIAMYMLNANEMRCSINTTQELMQPSITSLQAMLNSM------------NIVGFNDDRSVEDDDFLPK----TRRLLYE-------------MDLPVHYVSRCVRTVPYTHPDTAKLQVLAKVLSSKYLHREIREXXXXXXXXXXXXXXXX-XXXXXRDPNSVRTLEAFDHAVEWASQGKFKDEDIEEAKLSVFSSIDSPVSPGNRGMALFNNGLSDELRQTHRDRLFDASRDDLVDVCQRYLLPEKSVDSFAIVGPKT-ELSNDSHW 2218
RF+TYGN PLE HL++I E L+ +QKI+P T +P + W P+E + C D DP KQ ++VS+++ D FE+FTL L+S+LL SGPNSPFY+ALIES +G+D+SP +G + YT+ FSVGLQG+AE DI+ V +I +T +V GF+ RIE+LLH IE+ +KHQS++FGL L + S WN D +P+ LL+L Q+ + +Q L + FLQ K+K F +N H+LTL+M+P D +++K+ + E+ L++K++ L+P D ++++E+G L + Q++ +D S LP + +SDI+ I T +D ++ +Q QPTNG+ YFR+ ++ ++LP L+P++PLFC+VLTK+G Y++ AQQIEL TGG+SASPH++ D S M+T++QG+L SS CL RN+P M L +I N P + E + LV A +L +P SGH+YA A ++L+PA E FSG+ QV+ MK+IAE D ++ L +I ++LN + MRCS+N T + M + +++ L S+ + V S D +P R+L+ E M PV+YV C+RTVPYT PD A L++LA+++++K+LH EIREKGGAYG GAK+ + +SYRDPN++ TL++F AV+WA GKF +DI+EAKLSVFS++D+PV+P ++GM F GLSDE++Q HR++LF S D L+ V RYL KS AI+GP+ +++ D W
Sbjct: 264 RFFTYGNFPLEQHLKQIHEEALSKFQKIEPSTVVPAQTPWDKPREFQITCGPDSFATDPSKQTTISVSFLLPDITDTFEAFTLSLLSSLLTSGPNSPFYKALIESGLGTDFSPDVGYNGYTREAYFSVGLQGIAEKDIETVRSLIDRTIDEVVEKGFEDDRIEALLHKIEIQMKHQSTSFGLMLTSYIASCWNHDGDPVELLKLGNQLAKFRQCLQENPKFLQEKVKQYFKNNQHKLTLSMRPDDKYHEKQAQVEATKLKQKVEALSPGDRQQIYEKGLELRSQQSKPQDASCLPALKVSDIEPTIPVTELDVVLTAGDIPVQYCAQPTNGMVYFRAFSSLNTLPEELRPYVPLFCSVLTKLGCGLLDYREQAQQIELKTGGMSASPHVLPDDSHMDTYEQGVLFSSLCLDRNLPDMMQLWSEIFNNPCFEEEEHFKVLVKMTAQELANGIPDSGHLYASIRAGRTLTPAGDLQETFSGMDQVRLMKRIAEMTDIKPILRKLPRIKKHLLNGDNMRCSVNATPQQMPQTEKAVEDFLRSIGRSKKERRPVRPHTVEKPVPSSSGGDAHVPHGSQVIRKLVMEPTFKPWQMKTHFLMPFPVNYVGECIRTVPYTDPDHASLKILARLMTAKFLHTEIREKGGAYGGGAKLSHNGIFTLYSYRDPNTIETLQSFGKAVDWAKSGKFTQQDIDEAKLSVFSTVDAPVAPSDKGMDHFLYGLSDEMKQAHREQLFAVSHDKLLAVSDRYLGTGKSTHGLAILGPENPKIAKDPSW 1034 The following BLAST results are available for this feature:
BLAST of TCONS_00009266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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