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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009249 ID=TCONS_00009249|Name=TCONS_00009249|organism=Clytia hemisphaerica|type=transcript|length=1409bpRun BLAST on NCBI protein sequence of TCONS_00009249-protein >TCONS_00009249-protein ID=TCONS_00009249-protein|Name=TCONS_00009249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp MKVYTEKTLNRKLLLNYTEEKKKNYTVEDEIFDESELGADEVLVKINSCSRun BLAST on NCBI transcript from alignment at sc0000091:74857..81681- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009249 ID=TCONS_00009249|Name=TCONS_00009249|organism=Clytia hemisphaerica|type=transcript|length=6825bp|location=Sequence derived from alignment at sc0000091:74857..81681- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:74857..81681- >TCONS_00009249 ID=TCONS_00009249|Name=TCONS_00009249|organism=Clytia hemisphaerica|type=CDS|length=15372bp|location=Sequence derived from alignment at sc0000091:74857..81681- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009249 vs. Swiss-Prot (Human)
Match: QORL1 (Quinone oxidoreductase-like protein 1 OS=Homo sapiens GN=CRYZL1 PE=1 SV=2) HSP 1 Score: 234.958 bits (598), Expect = 4.189e-72 Identity = 118/291 (40.55%), Postives = 183/291 (62.89%), Query Frame = 3
Query: 129 VLVKINSCSLPDSQHPLLKKIQSLDNALPIGQDISGSIIAVGKDVQTFEIEDQVTGVIPANSGECGCANYCRISHYDIVKKAENVSHVDACSGIGDSVKAYTALFYQAKIQSGETLLILDACTGYGTIANQLAQYWGAKVIVVGSTDEEIAFLQNLEPPASQVVDLRNKRRSLASICLEETGGLGVDCILDNKVELYSEEYLDTLQTSKKSKKILPTKFEVISSLAVGGRWVTQQHNLQLDPPDSELLMLKCASLHFLFEQSWSLSRSAHGRYLHILNDIMKKMSKGVLRP 1001
V +++ +C+L LL +++ + P+G++I+G ++ VG V F+ +D+V G++P +S + G R+ + +V K E V+ +A I D V+AYTAL Y + + G+++LI+D + +GTIA QLA + GAKVI + E+ L+ PP ++V+D+ N + +A CLEETGGLGVD +LD V LYS++ ++ ++LP K ++I+ L VGG WVT + NLQLDPPDS L LK A+L FL ++ W+LS G+YL IL D+M+K+S GV RP
Sbjct: 33 VKLQVKACALSQINTKLLAEMKMKKDLFPVGREIAGIVLDVGSKVSFFQPDDEVVGILPLDSEDPGLCEVVRVHEHYLVHKPEKVTWTEAAGSIRDGVRAYTALHYLSHLSPGKSVLIMDGASAFGTIAIQLAHHRGAKVISTACSLEDKQCLERFRPPIARVIDVSNGKVHVAESCLEETGGLGVDIVLDAGVRLYSKDDEPAVKL-----QLLPHKHDIITLLGVGGHWVTTEENLQLDPPDSHCLFLKGATLAFLNDEVWNLSNVQQGKYLCILKDVMEKLSTGVFRP 318 The following BLAST results are available for this feature:
BLAST of TCONS_00009249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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