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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009247 ID=TCONS_00009247|Name=TCONS_00009247|organism=Clytia hemisphaerica|type=transcript|length=518bp
CAAATGTGTGTTCAGACTCTCCACGTAACTTTCAGTTCAATTATAATAAT
GCATTGCCCTGCATTAGGTTTATAAAATGTCCGGTCTGctacttttttgg
aaaagatttACATGCCCTACTCTTTTCCATAGAGCTTAACTTATAATACT
AacctaaaaaacgtaaaagaaagtgaaaatgatAACCTGCTGGTTCATTT
TACTGGTATTATACAGTGGCGTTTTTAGGGCGGAGAAGCCACCCAATATT
GTTTTGATGGTTGCTGATGACTTGGGTTGGACAGATGTTGGCTTCCATGG
GTCAGATCAAATCCCAACACCGAATATTGATAAATTGGCAAAAGAAGgaa
ttattttgaataattattaTGTGCAACCAATCTGTTCTCCAACAAGAAGT
GCTCTGATGACTGGAAGATATCCTATTCACACTGGAATGTTTCATGGAGT
CATTTGTCCAGAGGAGCCCTATGGTGTATCTTTAGAAGAAAAAATTCTCC
CAGAATATCTACGAGAAT Run BLAST on NCBI transcript from alignment at sc0000091:69161..74700- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009247 ID=TCONS_00009247|Name=TCONS_00009247|organism=Clytia hemisphaerica|type=transcript|length=5540bp|location=Sequence derived from alignment at sc0000091:69161..74700- (Clytia hemisphaerica)
CAAATGTGTGTTCAGACTCTCCACGTAACTTTCAGTTCAATTATAATAAT
GCATTGCCCTGCATTAGGTTTATAAAATGTCCGGTCTGCTACTTTTTTGG
AAAAGATTTACATGCCCTACTCTTTTCCATAGAGCTTAACTTATAATACT
AACCTAAAAAACGTAAAAGAAAGTGAAAATGATAACCTGCTGGTTCATTT
TACTGGTATTATACAGTGGCGTTTTTAGGGCGGAGAAGCCACCCAATATT
GTTTTGATGGTTGCTGATGACTTGGTATGTTCTTTAAAGATCTTTTCATA
AATTATGATTCTTTCTTTTCTTTGAAGATGTACACACTTTAGTTTGTGTT
TTTCATTCGTGTATTTGCTGTAACTGAACACAGCTGTAATTTAAGAATTT
GCCCTAAAGCGACTTTTTCGCCCGAACTTTAAATTGCTGAAAACGAGGAA
TTCCCAATCCAAAATTCCCAATATATTTTGACCAAGATTGTACTTGTTAC
CTATTTTAACGTTATTTTTCAGGGTTGGACAGATGTTGGATTCCATGGAT
CAGATCAAATTCCAACACCGAATATTGATAAATTGGCAAAAGAAGGAATT
ATTTTAAATAATTATTATGTGCAACCAATCTGTTCTCCAACGAGAAGTGC
TCTGATGACTGGAAGATATCCAATTCACACTGGTTAGTTGGTTATACTAA
CAATCAGGACTTTTTACTGGTTTATTGTTGAAATTACTGAGTACATTTAA
GTTAACGCTTACGGATCTGTTTATTTTGTCTGGATAAAGAATTTTTCGTT
TAGAAAATGCCCGTCGAAAAAAAATGCGAAAAGACGATTATTTATGCAAC
ATTGAATTTTTTTCTCTCTATCTTATAGGCATGTACCACAATACAATTTA
TGTGGAAGAACCTTGGGGTCTTCCCCTTGAAGAGAAAATCCTGCCACAAT
ATTTAAAGGATATGGGGTATGCTACACACGCCGTTGGAAAGGTTCGTAAT
TATAATTTTTACCATAGAAAGGTGTAAGAAAATAGATTGGTCCTACATAT
AAANGTTATAATTTTTACCATAGAAAAGTGTAAGAAAATAGATTGGTCCT
ACACGAAAAATATATACAGAATGACCATTAAAATGTTTTTTAAATTATTG
GTCCTACATATAAAACCTTTCATTAACATTATGATCTTGACGGTAAAATC
TTCTCCTTTATTTTCCAGTGGCACCTTGGTTACTTTGCCAAAGAATACAC
ACCAACCTATCGAGGATTCGATTCATATTACGGATATTATTGCGGTGCGG
AAGACTATTTCAACCATGCGAGATCTGGTGCTGATTTCCCAAGTTTTTAT
GGATTAGATCTTCATCGGGATTACCATGGAATGAGTGAGGTAGGTTGTTA
ATATTCAAATCTTTGTCTGTAAAGGGCTGGGAACAAGTCCTGAGGGGGAT
GGGGCACTCAAGGTAAATGACCAATCATATTTATTTTCCAAGTTCCAAAG
TGCACTGTAAGGGTCGAAATCAGCAAAGATGAGAAAAATTGGGGAACAAG
TTAAACTTGGAACTTTACTGCAATTAATTAAAAAGAGTCCGATTACCTTA
TTCCATGTTATATAACATAATTTAACGTTAAATTAAGATCTCCAGCCACT
TGCCTAACTCAGCATTTTTTAACATAAGAAAGAGCAACGTTTCCCAATTT
TTCCCGCGCCGTGTGAGCACAGAGACCATCAAACAATTTCATGACATTTT
TTCTCTTCTACAGCCTGACCGATCACAAAAAGGAAATTACAGTAGCAATC
TGTTTGCTTCTGAAGCTATTGACATCATCGAGAAACACCAGGAAGAACAA
CCTCTCTTTCTTTATCTACCATTCCAAAACGTTCACGTTCCTTTACAAGC
GCCCAAAGAAACCATTGATAAATTTTCGTACATTGAGGATAAAAATCGAA
GAACGTTTGCAGCAATGATGTCCAAACTTGATGATGCCATTGGACAGGTA
TTACTTCTTCGTAAACTTCTTTAAATGCATTAGAACAGTAATAGTCTCTT
AAAGTAGCAGTGTAGTAGTGTAGTGGTTATCGTTCTCGGCTTCTGGCGGG
ACTTTAGGGTTCGATTTCCACTCGGTGAAACGATTCATTTGACATGTTAA
CCATGCAGCTTCGGTTCAACCCATTAATCTTGTAAACTATTCTAAACGTC
TTTCAGAAACTTACAGACTTAACGTTTTTTAGGTTCATCAAGCGTTGGAG
GAGAAAGGTATTTTGGATAATACCATCATCATCTTTACTTCTGATAATGG
TGCCATTTCAACGGAAGGATTTTCAAGCAATTATCCTCTGCGAGGTGTAA
AACACATGGTGTTCGAAGGTAATGTTTTATCAACAACCGGAAGCATTAAA
CGAAATTTCTTTAAGCAACCTACTCATACTATTCTAAAACAATAAAATTT
TAGGTGCAGTCCGAGTGCCAGCTTTTATCAACAGTCCACTTTTGAAAAGA
TCAGGTGTTACTTCAATGCAAATGATGCATGTTACTGATTGGTTACCAAC
TATCGTCAACCTTGCTCAAGGGAAAATCACAAAAGAAATTGATGGTTTTG
ATCAATGGAAGACATTGCAAGATGACGTTGAATCACCAAGGAAAGAAATC
TTGTTGAATATCGATAATGTGGAGTTTCGACAAGAAGGTTTGATTTCTGG
AGAATGGAAAATTATTATCGACAGTGAGCACGATAGTAAGTTATAAAGTT
TTTATCCTGGTCTAGGATCTGATATCTTAATGTACGCCAGTCGTAAAGGG
GGTAATTAAGCGAAAAGAGGTACACGAGTGTGCCACTTGACCTATTTTTC
GTCTCTATCAGTTAGTACCAGGTAGGATCTCACGAAAATTACAAAAGAAA
GACACAACATTGAAAAATTACTTCCTTGTTCAGGTTGCCTTTTTGGATTT
TAGTCCCTTTGAGCTCACTAATTTGAAAATTGATAAAATGAGTCCTTTGT
AGTTTAATTCATTTTACTCATGAGATCAAAAAGTAACGAGGTGAAACCTA
CATCTAATATTTTAACATTCAGTTTATGCATCAGACGGTTGGATCAAAGC
CCCAGGATACAATGCCACTGGAAAAGCAAAAACGGTTATCAAATGTGGTC
ATAAACCTGACAAAACAACACATTGCAACGAGACACATTGTCTGTTCAAT
CTACATAACGATCCTTGTGAATATAATGATGTTTCAAGTCAATATCCTGA
AATTTATCAACAAATGAAAAAAAAACTTGAAGATTATAAAAAGGGAATGG
TCCCTAATCGAAACAAGCCAGGAGATAAAATGGCAGATCCCAAACTACAC
AGTGGTGTTTGGGGACCTTGGATTAAGCTTTGATAGCTACTTAAGCTGAA
TTTGGTAGAATGTTGCCTTTTTTGAATGGAATGTCACAAAGGCATTAATT
GCTTTAAGCTTTATACTGTACTCATTTATTTTGTGCTAGAACGTTGTCAA
GTATTCTTTGAAGCTATATGGCCAATCCAATCCTTGTAGGGTTTAGATTG
TAAACTTTTACTATTATTTATTGTCATAATCTTTTTAGGTAGTTAATGTA
CTTTTTTGTGGTAGATATCTTAACACCTTTTTTATGAATTTTCGTATTTA
ATTTAACGCATTGTAAATTTTTATAGGATCTCGAGCAAAACACTTTTCAT
TAAACAGTTTAATTTTAATATGAATGTCTGTTGTTACCTCGATTTGGCTA
ATGTAGAGAAACTCCCTAATTCGTTCTCTGTTTCATTTGACTGTTGAATA
TAACTTGATTCTTTTTGTTTATCACAGATCTATAAAAGAATAAAACAAAT
GTAATGTACGCAATCTTGAATATTTTAAACTGAACGATGGACAAGTTCAA
CGACCTTGTATTTTTCACCATCGTTTGTCTTGGATATGCTTTGGTGAAAA
GCGAGCAGCCACCAAATGTGGTTTTCATTGTGGCTGATGATTTGGTAAGA
CGTTTGTCTTCAATATTTTCTCATTTTCCCTTCAATGCAAACTCAGAAGA
TGTGATTGTCATTATGTAACCTAAGGGCGGCTTAAGCAATTTTGGTTTAA
AATTTTGAAATCGATGAAATACCGGGTGCACCACAAAAAAGTTTCTCTCT
TTAAAGTGAATTTTTTTTAGTTTAAAAAATTTTGAAAGAATTAATTTTTT
TTCATTGGAAATAAGAAAAATTAACTTGAATTTTGATGGGTNTTTTTGAA
AGAATTAATTTTTTTTCATTGGAAATCGACCTATCAAATTAATTAGAAGC
ATAATTACTTAACACGTCAGTATTTTCGTTTCAAGTATTAAAAATGATAA
TTAGCTGTGATAATGACATTTCGTTGTATAAAGGTAAGAGTTGAATATCA
ATAAAAGGAAGAAAATTCGTCGGAAAATGCCAAAAAATATGGTAAGATTC
GTGAAAATACATCAAATATTAGGTTTTGAAGTAAATCCTGCCTAACATTG
ACTTTACCTAGTCTAGAAGCAGAGATCTGAGGAAAAGTTCGGTAAAAGTA
AATCATAATGACTGAGATGACGATTCCAAGCCCTTTCGAGGCTTCAGCTT
CAAAATTGATGGGTTTGATCACTTAATATTGCTCTTAATCATGTAAAAAC
TATTGCGATTGCCAATTTTGAAATAAAAATTTGATAGGTCAATTTTCAAC
GTTTTCGAGCACTTTCTGAAAGTATAATTTTCGATCTAATGAACCGAATT
TAATAAATGACCCCTCAAAATTTAAGTTTATCTTTCTTCTTTCCANATAA
CTTTTTTATTCAATTGAGCATAAATCTCGATCTAAAGAACCGAATTTAAT
AAATGACCCCTCAAAATTTAAGTTTATCTTTCTTCTTTCCAATAAAAAAG
GAATGGTTCTTTTAAAGTTTTTAGACCTTGAGAAAATTAACTTTAAAGAG
AGAAACTTCTTTGTGACGCACCCGGTGTCTGAGTTGTTTTTCCAATATTG
TACTATCAGGGTTGGACAGATGTTGGCTTCCATGGGTCAGATCAAATCCC
AACACCGAATATTGATAAATTGGCAAAAGAAGGAATTATTTTGAATAATT
ATTATGTGCAACCAATCTGTTCTCCAACAAGAAGTGCTCTGATGACTGGA
AGATATCCTATTCACACTGGTTGGTTTAAACCTTATCATTTAAAGTATCA
ATCAGTAAATTTTGACTCAGACTCGACTGCTAAATTTGTATTTATTCACT
TAAACTAAAGAGGGCTTTAAAACCATTGACATTTTAAAAATCTGACGCTA
AATTTGTTTTAAATTTTTTCTTAGTATTTTGGCATAGTGGTCTTACAAAG
TTGTACTTCTGGAAAGGTGAGGTATGTATTCTTTAAAAAGATGACTAATC
GACTAATAGGTTTATAGCTTGGAAAGAAACCTTTCACGATTCACTTATTT
TTTAAGGAATGTTTCATGGAGTCATTTGTCCAGAGGAGCCCTATGGTGTA
TCTTTAGAAGAAAAAATTCTCCCAGAATATCTACGAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009247-exon-sc0000091-1575043694:74427..74700 | TCONS_00009247-exon-sc0000091-1575043694:74427..74700 | Clytia hemisphaerica | exon |
| TCONS_00009247-exon-sc0000091-1575043694:69532..69691 | TCONS_00009247-exon-sc0000091-1575043694:69532..69691 | Clytia hemisphaerica | exon |
| TCONS_00009247-exon-sc0000091-1575043694:69161..69244 | TCONS_00009247-exon-sc0000091-1575043694:69161..69244 | Clytia hemisphaerica | exon |
| TCONS_00009247-exon-sc0000091-1510915933:74427..74700 | TCONS_00009247-exon-sc0000091-1510915933:74427..74700 | Clytia hemisphaerica | exon |
| TCONS_00009247-exon-sc0000091-1510915933:69532..69691 | TCONS_00009247-exon-sc0000091-1510915933:69532..69691 | Clytia hemisphaerica | exon |
| TCONS_00009247-exon-sc0000091-1510915933:69161..69244 | TCONS_00009247-exon-sc0000091-1510915933:69161..69244 | Clytia hemisphaerica | exon |
| TCONS_00009247-exon-sc0000091-1491911889:74427..74700 | TCONS_00009247-exon-sc0000091-1491911889:74427..74700 | Clytia hemisphaerica | exon |
| TCONS_00009247-exon-sc0000091-1491911889:69532..69691 | TCONS_00009247-exon-sc0000091-1491911889:69532..69691 | Clytia hemisphaerica | exon |
| TCONS_00009247-exon-sc0000091-1491911889:69161..69244 | TCONS_00009247-exon-sc0000091-1491911889:69161..69244 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:69161..74700 - |
Blast
BLAST of TCONS_00009247 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.174e-32 Identity = 54/96 (56.25%), Postives = 76/96 (79.17%), Query Frame = 2
Query: 230 AEKPPNIVLMVADDLGWTDVGFHGSDQIPTPNIDKLAKEGIILNNYYVQPICSPTRSALMTGRYPIHTGMFHGVICPEEPYGVSLEEKILPEYLRE 517
A +PP++V ++ADDLGW DVGFHGS +I TP++D LA G++L+NYY QP+C+P+RS L+TGRY I TG+ H +I P +P V L+EK+LP+ L+E
Sbjct: 41 ASRPPHLVFLLADDLGWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLCTPSRSQLLTGRYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKE 135
The following BLAST results are available for this feature:
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