TCONS_00009239 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009239
Unique Name	TCONS_00009239
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1783

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000091:63128..66325-

transcript sequence

>TCONS_00009239 ID=TCONS_00009239|Name=TCONS_00009239|organism=Clytia hemisphaerica|type=transcript|length=1783bp
ATctataaaagaataaaacaaatGTAATGTACGCAATCTTAAATATTCTA
AACTGAACGATGGACAAGTTCAACGACCTTGTATTTTTTACCATCGTTTA
TCTTGGATATGCTTTGGGAAAAAGCGAGCAGCCACCAAATGTGGTCTTCA
TTGTGGCTGATGATTTGGGTTGGACAGATGTTGGTTTTCATGGATCAGAT
CAAATCCCAACACCGAACATTGATAAATTGGCAAAAGAAGgaattatttt
gaataattattaTGTGCAACCAATCTGTTCTCCAACGAGAAGTGCTTTGA
TGACTGGAAGATATCCTATTCATACTGGTATGTACCACAATACAATTTAT
ATTGAAGAACCTTGGGGTCTCTCGCTAGAAGAAAAGACTCTCCcacaata
tttgaaagaaatggGCTATGCTACGCATGCTGTCGGAAAGTGGCACCTTG
GATTCTTCGCGAAGGAGTACACGCCAACAAACAGAGGATTCGACACATTT
TATGGATACTATTCTGGTTCAGAAGAGTATTTCAGTCATTCGAGATCGGG
AGCTGATTTCGAACATTTCTACGGTTTAGATTTACGCCGTGATTATCAAG
GAATCAGTGAaCCTGATTGGTCACAAAATGGAACATACAGCAGCGAATTA
TTCGCCTCTGAAGCGATAAACATCATCGACGGACATAAATCAGAACAGCC
TCTTTTTCTTTACCTTCCCTTCCAAAACACTCATGGCCCACTGATGGCTC
CTCGAGATTGGATCGATAGATTTTCTTACATTGAAGATAAAAAGAGAAGG
ATTTTTGCTGCAATGGTTGCTACTTTAGATGAAGCCATCGGAAAAGTTCA
TCAAGCGTTGGAGGAGAAGGGCATTTTGGATAATACAATCATTATCTTTA
CTTCTGATAATGGTGCCATTTCAACGGAAGGATTCTCAAGCAATTATCCT
CTGCGAGGTGTAAAACACATGGTGTTCGAAGGTGCAGTCCGAGTGCCAGC
GTTTATCAACAGTCCACTATTGAAAAGATCAGGTGTTACTTCAATGCAAA
TGATGCATGTTACTGATTGGTTACCAACTATCGTCAACCTTGCTCAaggg
aaaatcacaaaagaaattgatggttttgatcagtggaagacattgcaaag
tGACGTTGAATCGCCAAGAAAAGAAATCTTGTTGAATATCGATCACTTCT
TTAATCAAGAAGCCCTCATAGCTGGAGAATGGAAAATTATAGTTGACAGC
CTTTATGAGGACGGGCTATACTCTGACGGATGGATCAAGGCTCCAGGATA
CAACGCCACTGGAAAAGCAACATCAGTTATCAAATGTGGTCCAAAACCTG
ACAAAACAACACATTGCAATGAAACACATTGTCTGTTCAATCTACAAAAC
GATCCTTGTGAATATAATGATGTTTCAAGTCAATATCCTGAAATTTatca
acaaatgaaaaacaaacttGAAGATTACAAAAAGGGAATGGNTTGTGAAT
ATAATGATGTTTCAAGTCAATATCCTGAAATTTATcgacaaatgaaaaac
aaacttgaaaattacaaaaaaagtgtAGCTCCCAACAGAAACAAGCCAGG
AGACAAAATGGCTGACCCAAGATTACATGGGGGTGTCTGGTCCCCATGGA
TAAAATTAAACTGAGCtttttttttgaggtttttcaTTGATTGATATAGA
ACAATCTTAAAGgtcttttttaagaaattttttatgCATCTTTTGTACTT
TTTAATTGCAATAATGAGACAGCTAAACGCTTA

Run BLAST on NCBI

transcript from alignment at sc0000091:63128..66325-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009239 ID=TCONS_00009239|Name=TCONS_00009239|organism=Clytia hemisphaerica|type=transcript|length=3198bp|location=Sequence derived from alignment at sc0000091:63128..66325- (Clytia hemisphaerica)
ATCTATAAAAGAATAAAACAAATGTAATGTACGCAATCTTAAATATTCTA
AACTGAACGATGGACAAGTTCAACGACCTTGTATTTTTTACCATCGTTTA
TCTTGGATATGCTTTGGGAAAAAGCGAGCAGCCACCAAATGTGGTCTTCA
TTGTGGCTGATGATTTGGTAAGACGTTTGTCTTCAATATTTTTCCATTTT
CCCTTCATTGCAAATTCAGAACATTTGATTGAAAGGTACAAAGTCATTAT
GTAGCTTAAGGACTTGAGCAATTTTTTTCCCGATATTGTACTTCCAGGGT
TGGACAGATGTTGGTTTTCATGGATCAGATCAAATCCCAACACCGAACAT
TGATAAATTGGCAAAAGAAGGAATTATTTTGAATAATTATTATGTGCAAC
CAATCTGTTCTCCAACGAGAAGTGCTTTGATGACTGGAAGATATCCTATT
CATACTGGTGAGTCAAAACACATTTTTTTTTACACACTAGACAGGTTGAC
TAACAGATTTCCCGTAAAATCGTGCCAAGTTTTAAAGTTGACTAGTCCTC
CAGGTTTTTCTATTTTACGTCAGACTTTCGAACGTCTGATAGGAAATCCG
ATCTAGTAAATTAGTTAGAGATCAGCGATTCAAACATGAGTATTATCAAA
CAGTACACTTTTGGTCTTTCTGGTAAGGTCGGAAAATAATTGCATTTAGT
TTTCAGCTTGCTGTAAAATAATCTAAACTTATCGATTGAATTTCTCAATA
CATTTTTATATTTAGGTATGTACCACAATACAATTTATATTGAAGAACCT
TGGGGTCTCTCGCTAGAAGAAAAGACTCTCCCACAATATTTGAAAGAAAT
GGGCTATGCTACGCATGCTGTCGGAAAGGTTAAAATACATAATAATAGTA
AAATAAATAAAAAAAGACCAAGCTCGTTTCAATCAAACTAGCAAACTAAC
CTTTGGTTAAAAATCTATGTATTTAAAATTACTAGTAATAAAAACTTAAT
CTTTACTTTCCAGTGGCACCTTGGATTCTTCGCGAAGGAGTACACGCCAA
CAAACAGAGGATTCGACACATTTTATGGATACTATTCTGGTTCAGAAGAG
TATTTCAGTCATTCGAGATCGGGAGCTGATTTCGAACATTTCTACGGTTT
AGATTTACGCCGTGATTATCAAGGAATCAGTGAAGTATAATAATTTTTTT
TCGTTCGTTCGTACGTTCGTTCGTTCGGATGTTGATTATATCAAGCAGTA
ATTAAGCTATGTATTTAAGAATTTGTATTTGACGTGCAATATCAGAATTA
AGCTTTCAGTTGTCCATTGTATCTCTTTATAGCCTGATTGGTCACAAAAT
GGAACATACAGCAGCGAATTATTCGCCTCTGAAGCGATAAACATCATCGA
CGGACATAAATCAGAACAGCCTCTTTTTCTTTACCTTCCCTTCCAAAACA
CTCATGGCCCACTGATGGCTCCTCGAGATTGGATCGATAGATTTTCTTAC
ATTGAAGATAAAAAGAGAAGGATTTTTGCTGCAATGGTTGCTACTTTAGA
TGAAGCCATCGGAAAAGTATCTTGATGTTTTTCTTCACATTTGCATATTA
TTTAAGGGGTATAGGGTCAAGAAAAAATCAAGTCATAATTTTTCAGATTT
TTGCAATGAATTTTGGTCAGCCTCTTCAAATAAATAGCAACTGCATGGAC
ATCTTCTAACCCTCAGCCACATCTTTAAGTTAGTGTATATGTTTTACACA
TCCTTACTCAGCAGCACAGATCTCAATCACCGAGACACTTCCTCATTTAT
CTAGGTTCATCAAGCGTTGGAGGAGAAGGGCATTTTGGATAATACAATCA
TTATCTTTACTTCTGATAATGGTGCCATTTCAACGGAAGGATTCTCAAGC
AATTATCCTCTGCGAGGTGTAAAACACATGGTGTTCGAAGGTATTGTTTT
TACATGATATTTTCTCCAAACTGTTTTACAAAGGCTATTTACTGAAGGTA
GTGACGGCCTCGGAGATTGTTTAAAATTTGAAGAATACAGAACCTTTTGA
ATTTTACCTAACAGTCTTAATTTATAAATAGTTTATCTAAAACCAATCTC
TGTAAATCCAAGGTGCAGTCCGAGTGCCAGCGTTTATCAACAGTCCACTA
TTGAAAAGATCAGGTGTTACTTCAATGCAAATGATGCATGTTACTGATTG
GTTACCAACTATCGTCAACCTTGCTCAAGGGAAAATCACAAAAGAAATTG
ATGGTTTTGATCAGTGGAAGACATTGCAAAGTGACGTTGAATCGCCAAGA
AAAGAAATCTTGTTGAATATCGATCACTTCTTTAATCAAGAAGCCCTCAT
AGCTGGAGAATGGAAAATTATAGTTGACAGCCTTTATGAGGACGGGCGTA
AGAAATTGATTTACATACCTGAAGTTTTACTCAATTGTTTTCTGAACCTT
ATAATATCAACTTTGTTATTTGGAGTCTGGAAAAGTGATTTTCACCAAAA
CTAATTCTATAGCATTAAAAGAATTAAAAATAAAGTGAACGAGTCCATTA
TTGTTTGTACGCACGATTAGTATTGTCTTTTCAATCTTTTTTTTTTGCAC
GAAAAAAATGTTTTTAAATTAACGATTAGTGCTCAAAAAAGTAAAACGTG
CTTCAACTACAATGTGATTTGTTATCTTTAGTATACTCTGACGGATGGAT
CAAGGCTCCAGGATACAACGCCACTGGAAAAGCAACATCAGTTATCAAAT
GTGGTCCAAAACCTGACAAAACAACACATTGCAATGAAACACATTGTCTG
TTCAATCTACAAAACGATCCTTGTGAATATAATGATGTTTCAAGTCAATA
TCCTGAAATTTATCAACAAATGAAAAACAAACTTGAAGATTACAAAAAGG
GAATGGNTTGTGAATATAATGATGTTTCAAGTCAATATCCTGAAATTTAT
CGACAAATGAAAAACAAACTTGAAAATTACAAAAAAAGTGTAGCTCCCAA
CAGAAACAAGCCAGGAGACAAAATGGCTGACCCAAGATTACATGGGGGTG
TCTGGTCCCCATGGATAAAATTAAACTGAGCTTTTTTTTTGAGGTTTTTC
ATTGATTGATATAGAACAATCTTAAAGGTCTTTTTTAAGAAATTTTTTAT
GCATCTTTTGTACTTTTTAATTGCAATAATGAGACAGCTAAACGCTTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005177	XLOC_005177	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000091	supercontig	sc0000091:63128..66325 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.0899	28.8165	12.0582	8.41591	2.53297	1.43861	3.93507	3.9351	7.21381	5.44906	8.72606	10.1699	9.77531	9.68213	14.9864	18.575	11.0523	11.0949	6.09267	6.77441	6.63441	6.24809	12.9694	11.0445	4.33983	3.21439	10.6018	11.0225	8.68541	7.77029

Blast

[Close]

BLAST of TCONS_00009239 vs. Swiss-Prot (Human)
Match: ARSJ (Arylsulfatase J OS=Homo sapiens GN=ARSJ PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.636e-112
Identity = 206/523 (39.39%), Postives = 297/523 (56.79%), Query Frame = 3

Query:  123 SEQPPNVVFIVADDLGWTDVGFHGSDQIPTPNIDKLAKEGIILNNYYVQPICSPTRSALMTGRYPIHTGMYHNTIYIEEPWGLSLEEKTLPQYLKEMGYATHAVGKWHLGFFAKEYTPTNRGFDTXXXXXXXXXXXXXXXRSGADFEHFYGLDLRRDYQGISEPDWSQNGTYSSELFASEAINIIDGHKSEQPLFLYLPFQNTHGPLMAPRDWIDRFSYIEDKKRRIFAAMVATLDEAIGKVHQALEEKGILDNTIIIFTSDNGAISTEGFSSNYPLRGVKHMVFEGAVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGKITKEI--DGFDQWKTLQSDVESPRKEILLNIDHFFNQEALIAGEWKI---IVDSLYEDGLYSDGW---IKAPGYNATGKATSVIKCGP----KPDKTTHCNETHCLFNLQNDPCEYNDVSSQYPEIYQQMKNKLEDYKKGMXCEYNDVSSQYPEIYRQMKNKLENYKKSVAPNRNKPGDKMADPRLHGGVWSPWIK 1655
            S   P+++FI+ADD G+ DVG+HGS+ I TP +DKLA EG+ L NYYVQPIC+P+RS  +TG+Y IHTG+ H+ I   +P  L L+  TLPQ LKE+GY+TH VGKWHLGF+ KE  PT RGFDTF+G   GS +Y++H +   D     G DL  +     + D   NG YS++++      I+  H   +P+FLY+ +Q  H PL AP  + + +  I +  RR +AAM++ LDEAI  V  AL+  G  +N+III++SDNG   T G  SN+PLRG K   +EG +R   F++SPLLK  G    +++H+TDW PT+++LA+G+I ++I  DG+D W+T+   + SPR +IL NID  + +     G W     I ++  +  +    W      PGY+      S    GP        T    ++  LFN+  DP E  D+S++YP                              I +++  +L  + K+  P R  P D  ++PRL+GGVW PW K
Sbjct:   72 STSQPHLIFILADDQGFRDVGYHGSE-IKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKECMPTRRGFDTFFGSLLGSGDYYTHYK--CDSPGMCGYDLYENDNAAWDYD---NGIYSTQMYTQRVQQILASHNPTKPIFLYIAYQAVHSPLQAPGRYFEHYRSIININRRRYAAMLSCLDEAINNVTLALKTYGFYNNSIIIYSSDNGGQPTAG-GSNWPLRGSKGTYWEGGIRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILHNIDPIYTKAK--NGSWAAGYGIWNTAIQSAIRVQHWKLLTGNPGYSDWVPPQSFSNLGPNRWHNERITLSTGKSVWLFNITADPYERVDLSNRYP-----------------------------GIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPWYK 556

The following BLAST results are available for this feature:

BLAST of TCONS_00009239 vs. Swiss-Prot (Human)

BLAST of TCONS_00009239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARSJ	2.636e-112	39.39	Arylsulfatase J OS=Homo sapiens GN=ARSJ PE=2 SV=1	[more]

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TCONS_00009239 (transcript) - C. hemisphaerica