TCONS_00009238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009238
Unique NameTCONS_00009238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009238 ID=TCONS_00009238|Name=TCONS_00009238|organism=Clytia hemisphaerica|type=transcript|length=1477bp
cgcagtatttatattttttgtagaAAGCTTAGCATAAACTTTTTACGATG
TATTATTTcttttacttgcttttattttgtattgttGGATATGCTTTGGT
GAAAAGTGAGCAGCCTCCAAACGTTGTTCTTATTGTAGCTGATGATTTGG
GTTGGACAGATGTTAGTTTCCATGGCtgcgatcaaatcaaaacaccGAAT
ATTGATAAATTGGCAAAAGAAGgaattattttgaataattattaTGTGCA
ACCAATTTGTACTCCAACGAGAAGTGCTCTGATGACTGGGAGATATCCTA
TACATACTGGTATGCAGCATGGTGTCCTTCTCGCTTCTGAACCTTGGGGT
CTCTCTTTGGATGAGAAAACCCTTCCACAGTATTTGAAAGAAATGGGATA
TGCTACACACGCCATTGGAAAATGGCATCTTGGTATGTTTGCCAAAGAAT
ACACACCAACATACAGAGGCTTCGATACATTTTATGGATACTACAATGGA
GCTGAGGATTACTACTATCATAATGTGTCGGATATGCACTTTCCTCAATA
TAGCGGATTGGATTTAAGGAAAGATTCAAATGGTCAAAGCCAGCCAGTTT
GGACTCAAAGCGGAAATTATAGCAGCTTTGTGTTTGCAGAAGAAGCTGTT
AATGTGATTTCAAGCCAATCAAAAGAACAACCTTTGTTTTTATACCTTCC
CTTCCAAAATGTTCATTTCCCATTTGAAGCACCTCAAGAATGGATCgata
aattttctttcattgaagatgaaaagAGAAGAACGTTTGCTGCAATGGTC
GCTCTTTTAGATGATGCAGTAAGAAAAATTTATGAAGCTTTGGAAGCTAC
AGATATGGTTGACAATACTCTGATTATCTTCACTTCTGACAACGGAGGGA
GATCAAGCCAGGGATATGCCAGCAATTTCCCTTTGAGGGGAGAAAAAGGA
AAGATCTTTGAAGGTGGTGTCCGAGTACCAGCATTTATCAACAGTCCACT
TTTGAAAAGATCAGGTGTTACATCAATGCAAATGATGCATGTTACTGATT
GGTTGCCAACTATCGTCAACCTTGCTCAagggaaaatcacaaaagaaatt
gatggttttgatcaatggaagacattgcaaagtGACGTTGAATCGCCAAG
AAAAGAAATCTTGTTGAATATCGATACTGAAGTCGGAGAAGAAGGTCTGA
TTTTCGATCAGTGGAAAATTATCAAAGAAAGTAAGACTTTTCTCATTGTT
ATGTTTGTTAGTAGTAATTTAGCGactgtagtgcagtggtagagtatcca
actacggtgcgcaaggtcgtgggttcaatcccgagccgggtcataccaaa
gattcccaaaatggtacttgatgcctctctacttgatgctcagcaattaa
gagaaggatcaagggtaagtggagcaatccagggagaaagaatggcgccc
tcccctaccttcgggtagatagctatc
Run BLAST on NCBI

transcript from alignment at sc0000091:58969..62633-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009238 ID=TCONS_00009238|Name=TCONS_00009238|organism=Clytia hemisphaerica|type=transcript|length=3665bp|location=Sequence derived from alignment at sc0000091:58969..62633- (Clytia hemisphaerica)
CGCAGTATTTATATTTTTTGTAGAAAGCTTAGCATAAACTTTTTACGATG
TATTATTTCTTTTACTTGCTTTTATTTTGTATTGTTGGATATGCTTTGGT
GAAAAGTGAGCAGCCTCCAAACGTTGTTCTTATTGTAGCTGATGATTTGG
TAAGTACTTTCATTTACTGGTTTTTAATTTGATTCTCAGATTTTCAAATT
TATATTGAAATGTTTACAATTTCTTTTCCAGGGTTGGACAGATGTTAGTT
TCCATGGCTGCGATCAAATCAAAACACCGAATATTGATAAATTGGCAAAA
GAAGGAATTATTTTGAATAATTATTATGTGCAACCAATTTGTACTCCAAC
GAGAAGTGCTCTGATGACTGGGAGATATCCTATACATACTGGTTAGTCTT
TTTCTCGTGCTTCCAGGGCCCGCGCCACCGGGGGACCAGGAGTGCCATGG
CCCCCACTTTTGCAAAGTAAAAATTTTTGGTTGCGCCTCCTTAAACTCTT
TATTTATTGCCCCCCTCACTTTCAATTTCATGGCGTGGGCCCTGGCTTCG
CCTTTAACGATCATGGCCATTTTGTCCCTATTTTTTAATATATTTCAAAC
AATATATTCTTTTCTTTGAAGGTATGCAGCATGGTGTCCTTCTCGCTTCT
GAACCTTGGGGTCTCTCTTTGGATGAGAAAACCCTTCCACAGTATTTGAA
AGAAATGGGATATGCTACACACGCCATTGGAAAAGTAAGGCTTTCTGTAA
CCTTGTTCCATCTTTTTCGAGTACTTTTTTGTATTTCGTTAATGCTTTAA
AGGAATAACCAGCTACTTTCGTTTTCAGATATGTCATGGTGTACCTAATT
CTGTAGAGTAATTTCTCCTACGTTATAATTATAAGATATAACTAAAATAG
AATTAGGGACTTTGGCTTGAAAAGGAGACGAATTAACTTGTATCTACCCC
AAAAGGTTATTTGAAGCCAAAATTTTGATGATATTTTTTAATTGCAACAT
TTTCGAAGTATATTGTAAGTGAGTTTTCAGAAATTACTTTATGGCCGATC
TGAAAATTAAATGTTGTTCGTTATCCCTTAACATACATTTTCTTTCTTTT
TTTTCCTTGTAGTGGCATCTTGGTATGTTTGCCAAAGAATACACACCAAC
ATACAGAGGCTTCGATACATTTTATGGATACTACAATGGAGCTGAGGATT
ACTACTATCATAATGTGTCGGATATGCACTTTCCTCAATATAGCGGATTG
GATTTAAGGAAAGATTCAAATGGTCAAAGCCAGGTTAGATCGCTGATTGT
TTGGAATAAAAATTACGTTAATACACCTCTGTCTCTGCGTAGATTTTTCT
CATGGACATTTTTAACACCATTCCTGGTAGAAGTTTTTTACGTTTTATCC
GCCATTATGGAAGCCATCGTTCGAATCTGTACAGGCGATCCCTTACGCAA
TTCGAACGTTTGCTTCCATAATGACGGAAATTGCTTACGGAAATTTAGTA
ACGTTTGCCAACCACCTTACCCACTCTAAGCTTTTCAATAGATTATTTTT
ATTTCTATTTTCTCAAACAAAGTTGATGCTTATTTTCTATTTCTTTTCAG
CCAGTTTGGACTCAAAGCGGAAATTATAGCAGCTTTGTGTTTGCAGAAGA
AGCTGTTAATGTGATTTCAAGCCAATCAAAAGAACAACCTTTGTTTTTAT
ACCTTCCCTTCCAAAATGTTCATTTCCCATTTGAAGCACCTCAAGAATGG
ATCGATAAATTTTCTTTCATTGAAGATGAAAAGAGAAGAACGTTTGCTGC
AATGGTCGCTCTTTTAGATGATGCAGTAAGAAAAGTAAGGCTCTTTTTAC
ACTTTGAGCCTGATAGTTTTGTTTGTATTGAGACCATGGGTATGATGAAG
CCAAATTATGTAGTCATAAAAGGTACATGTAGATTATAGTAGTCGTTCAT
CAATCTTAATTTTATGTGANTACCATATGTTGATGTAGATTATAGTAGTC
GTTCATCAATCTTAATTTTATGTGATTGGCCCTCTGAACCTACTACTTCT
TTGATCTAGATCTGATCCTTGATAGTTGATATCTAACAATTTAAGGCGTA
GGCGTAGTGATTATCATCCTCCTGGGAGGCGCGAGTTCGTTACCCACCGT
GTCACTACGATTCACTTAGCAAGTAAATATATATCTTCGCCCGGGAAGAC
CTATGCAATGCGAGGGGAATCGGGTACCATTACTCAGATACAAGAGTGTG
GGTAGATTAGACTGGCATTGTGACAAGCCGAGGCACTTCTAAGGTTCGAC
CTCGCGTAAGCATCACTCTCCCGGTGTCGTTCCGTAATTCCTACTCCTTC
GGGAGTAGGACCCATCCCGAATGCGTTCGGAGGGTCTACTCTCGGGTACC
TAATAGCCGGGGGGATTGGAATAAGCGGGGGAATTGGAAAATATCTCGAA
ACTTAATAAGCGGGGGGGGGGTGGAATAAAAATGTCTTGGGTGGAGAATT
TTTGAAAAGGAGGCTAACACAGCATAATTAGGACAAAAGAGGGGAACTTT
CAAAAACATTTTCCCAAAAATTAATAAGCGGGGGGGTTGTAATAAGAATG
TTCTGGGTGGAAAATTTTCGAAAAATTAATTAGCGGGGGGGGGGCCGGCT
ATTAGGTACCCAAGAGTACTTTCTATCATTATATCTNTACTTCTAAGGTT
CGACCTCGCGTTAGCATCACTCTCCCGGTGTCGTTCGAGTGTCATGGTAT
ACGTCATGGCTTTGCAGCTCGCGTATGACAAGTCGCAGTGTCTGTCAGCA
CCGTAATTCCTACTCCTTCGGGAGTAGGACCCATCCCGAATGCGTTCGGA
GGGTCTACTTTCTATCATTATATCTCATATCTTTACCTAACTATTTTTCT
TCAATCTTAAATCTCTTATCTAGATTTATGAAGCTTTGGAAGCTACAGAT
ATGGTTGACAATACTCTGATTATCTTCACTTCTGACAACGGAGGGAGATC
AAGCCAGGGATATGCCAGCAATTTCCCTTTGAGGGGAGAAAAAGGAAAGA
TCTTTGAAGGTAGAGAGCATATATAGTATTTTTTCTCGTATATGTCCGTT
TGAAATTTGGTAAATCCCCTAATACCAATTTACAATTTTGTTTTTTGATA
GGTGGTGTCCGAGTACCAGCATTTATCAACAGTCCACTTTTGAAAAGATC
AGGTGTTACATCAATGCAAATGATGCATGTTACTGATTGGTTGCCAACTA
TCGTCAACCTTGCTCAAGGGAAAATCACAAAAGAAATTGATGGTTTTGAT
CAATGGAAGACATTGCAAAGTGACGTTGAATCGCCAAGAAAAGAAATCTT
GTTGAATATCGATACTGAAGTCGGAGAAGAAGGTCTGATTTTCGATCAGT
GGAAAATTATCAAAGAAAGTAAGACTTTTCTCATTGTTATGTTTGTTAGT
AGTAATTTAGCGACTGTAGTGCAGTGGTAGAGTATCCAACTACGGTGCGC
AAGGTCGTGGGTTCAATCCCGAGCCGGGTCATACCAAAGATTCCCAAAAT
GGTACTTGATGCCTCTCTACTTGATGCTCAGCAATTAAGAGAAGGATCAA
GGGTAAGTGGAGCAATCCAGGGAGAAAGAATGGCGCCCTCCCCTACCTTC
GGGTAGATAGCTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005177XLOC_005177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009238-exon-sc0000091-1575043694:62485..62633TCONS_00009238-exon-sc0000091-1575043694:62485..62633Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1575043694:62243..62402TCONS_00009238-exon-sc0000091-1575043694:62243..62402Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1575043694:61900..62012TCONS_00009238-exon-sc0000091-1575043694:61900..62012Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1575043694:61351..61521TCONS_00009238-exon-sc0000091-1575043694:61351..61521Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1575043694:60800..61033TCONS_00009238-exon-sc0000091-1575043694:60800..61033Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1575043694:59575..59710TCONS_00009238-exon-sc0000091-1575043694:59575..59710Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1575043694:58969..59482TCONS_00009238-exon-sc0000091-1575043694:58969..59482Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1510915933:62485..62633TCONS_00009238-exon-sc0000091-1510915933:62485..62633Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1510915933:62243..62402TCONS_00009238-exon-sc0000091-1510915933:62243..62402Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1510915933:61900..62012TCONS_00009238-exon-sc0000091-1510915933:61900..62012Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1510915933:61351..61521TCONS_00009238-exon-sc0000091-1510915933:61351..61521Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1510915933:60800..61033TCONS_00009238-exon-sc0000091-1510915933:60800..61033Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1510915933:59575..59710TCONS_00009238-exon-sc0000091-1510915933:59575..59710Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1510915933:58969..59482TCONS_00009238-exon-sc0000091-1510915933:58969..59482Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1491911889:62485..62633TCONS_00009238-exon-sc0000091-1491911889:62485..62633Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1491911889:62243..62402TCONS_00009238-exon-sc0000091-1491911889:62243..62402Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1491911889:61900..62012TCONS_00009238-exon-sc0000091-1491911889:61900..62012Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1491911889:61351..61521TCONS_00009238-exon-sc0000091-1491911889:61351..61521Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1491911889:60800..61033TCONS_00009238-exon-sc0000091-1491911889:60800..61033Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1491911889:59575..59710TCONS_00009238-exon-sc0000091-1491911889:59575..59710Clytia hemisphaericaexon
TCONS_00009238-exon-sc0000091-1491911889:58969..59482TCONS_00009238-exon-sc0000091-1491911889:58969..59482Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:58969..62633 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15907	0.721856	0.839888	1.87928	0.284601	0.120229	0.318735	0.275113	0.354281	0.558496	1.44033	0.429214	1.65534	2.56751	0.840547	1.38838	0.199127	0.761036	2.12863	1.19627	1.98177	1.71524	1.35897	1.17495	1.11101	0.302769	1.08302	0.728107	3.37369	3.64302
Blast
[Close]
BLAST of TCONS_00009238 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 6.428e-109
Identity = 174/363 (47.93%), Postives = 250/363 (68.87%), Query Frame = 3 
Query:  105 SEQPPNVVLIVADDLGWTDVSFHGCDQIKTPNIDKLAKEGIILNNYYVQPICTPTRSALMTGRYPIHTGMQHGVLLASEPWGLSLDEKTLPQYLKEMGYATHAIGKWHLGMFAKEYTPTYRGFDTFXXXXXXXXXXXXH---NVSDMHFPQYSGLDLRKDSNGQSQPVWTQSGN-YSSFVFAEEAVNVISSQSKEQPLFLYLPFQNVHFPFEAPQEWIDKFSFIEDEKRRTFAAMVALLDDAVRKIYEALEATDMVDNTLIIFTSDNGGRSSQGYASNFPLRGEKGKIFEGGVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGKI--TKEIDGFDQWKTLQSDVESPRKEILLNID 1175
            + +PP++V ++ADDLGW DV FHG  +I+TP++D LA  G++L+NYY QP+CTP+RS L+TGRY I TG+QH ++   +P  + LDEK LPQ LKE GY TH +GKWHLGM+ KE  PT RGFDT++GY  G+EDYY H    + D        LD R       + V T   N YS+ +F + A+ +I++   E+PLFLYL  Q+VH P + P+E++  + FI+D+ R  +A MV+L+D+AV  +  AL+++ + +NT+ IF++DNGG++  G  +N+PLRG K  ++EGGVR   F+ SPLLK+ GV + +++H++DWLPT+V LA+G    TK +DGFD WKT+     SPR E+L NID
Sbjct:   41 ASRPPHLVFLLADDLGWNDVGFHG-SRIRTPHLDALAAGGVLLDNYYTQPLCTPSRSQLLTGRYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHERCTLIDALNVTRCALDFR-----DGEEVATGYKNMYSTNIFTKRAIALITNHPPEKPLFLYLALQSVHEPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQTLAG-GNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNID 396
The following BLAST results are available for this feature:
BLAST of TCONS_00009238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARSB6.428e-10947.93Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1[more]
back to top