TCONS_00009236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009236
Unique NameTCONS_00009236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009236 ID=TCONS_00009236|Name=TCONS_00009236|organism=Clytia hemisphaerica|type=transcript|length=3795bp
cgcagtatttatattttttgtagaAAGCTTAGCATAAACTTTTTACGATG
TATTATTTcttttacttgcttttattttgtattgttGGATATGCTTTGGT
GAAAAGTGAGCAGCCTCCAAACGTTGTTCTTATTGTAGCTGATGATTTGG
GTTGGACAGATGTTAGTTTCCATGGCtgcgatcaaatcaaaacaccGAAT
ATTGATAAATTGGCAAAAGAAGgaattattttgaataattattaTGTGCA
ACCAATTTGTACTCCAACGAGAAGTGCTCTGATGACTGGGAGATATCCTA
TACATACTGGTATGCAGCATGGTGTCCTTCTCGCTTCTGAACCTTGGGGT
CTCTCTTTGGATGAGAAAACCCTTCCACAGTATTTGAAAGAAATGGGATA
TGCTACACACGCCATTGGAAAATGGCATCTTGGTATGTTTGCCAAAGAAT
ACACACCAACATACAGAGGCTTCGATACATTTTATGGATACTACAATGGA
GCTGAGGATTACTACTATCATAATGTGTCGGATATGCACTTTCCTCAATA
TAGCGGATTGGATTTAAGGAAAGATTCAAATGGTCAAAGCCAGCCAGTTT
GGACTCAAAGCGGAAATTATAGCAGCTTTGTGTTTGCAGAAGAAGCTGTT
AATGTGATTTCAAGCCAATCAAAAGAACAACCTTTGTTTTTATACCTTCC
CTTCCAAAATGTTCATTTCCCATTTGAAGCACCTCAAGAATGGATCgata
aattttctttcattgaagatgaaaagAGAAGAACGTTTGCTGCAATGGTC
GCTCTTTTAGATGATGCAGTAAGAAAAATTTATGAAGCTTTGGAAGCTAC
AGATATGGTTGACAATACTCTGATTATCTTCACTTCTGACAACGGAGGGA
GATCAAGCCAGGGATATGCCAGCAATTTCCCTTTGAGGGGAGAAAAAGGA
AAGATCTTTGAAGGTGGTGTCCGAGTACCAGCATTTATCAACAGTCCACT
TTTGAAAAGATCAGGTGTTACATCAATGCAAATGATGCATGTTACTGATT
GGTTGCCAACTATCGTCAACCTTGCTCAagggaaaatcacaaaagaaatt
gatggttttgatcaatggaagacattgcaaagtGACGTTGAATCGCCAAG
AAAAGAAATCTTGTTGAATATCGATACTGAAGTCGGAGAAGAAGGTCTGA
TTTTCGATCAGTGGAAAATTATCAAAGAAATCACAACTGCAGATGGTTGG
ATGAAACCTGCCGGATACAACGCCAGTGGAAAAGCAACAACGGTTGTCGA
TTGTGGTCCAAAACCTGACAAAATGACACATTGCAATGAAACACATTGTC
TGTTCAATCTACAAAACGACCCTTGTGAATATAATGATGTGTCAAGTCAA
TACCCTGAAATTTatcaacaaatgaaaaacaaacttGAAGATTACAAAAA
GGGAATGGTGCCACCTGTCAATCAACCTGGGGATAAAAATTGCGATCCAG
ATTTATTCGGTGGCGTATGGACTCCATGGATTGAATTATAGCCTAGCTTA
ACTTTTATTATTGATCTTGTGCTTGCAAATCTTTTATGCTGGGCATTCTT
TGTGCAATTTTTCTTCAATTATGTACATCATCATTGTTAGcattttttgc
tttctttttctaaCAGCAATTACGTAATTTCTAGTTGGATTAAACCGTTA
TACTACAGTGGGAACCGAACTCGGACCTCCCAGACGAGAGTCAAGAGCGA
TGACCACCATACCACTACGCCTGATTTGATATAGTGGCAGATCAATTTTT
CACGAAGATTTATTTATTGAAAGTAATGATAAGTAAATACCATGGTAGAA
AAGAACTTGCTgagttttattttcttttatagtGCCATTGCctttaaaaa
ctaaaataaatttacTATAATTTGATTTCATCGACGACCATGGAGGTGTT
TTCGTTGATGTTGACTCTGCTGTTGGTATCCTGTCTTCAATTCGCTTTTG
TGGAAAGCGAGCAGCCACCAAATGTGGTTTTCATTTTGGCTGATGATTTG
GGATGGAATGATGTAGGATTTCATGGCTCTGATCAAATTGAGACACCAAA
TATTGATAAACTGGCAAAAGAAGgaattattttgaataattattaTGTGC
AACCAATCTGCTGTCCGACGAGAAGTGCTCTGATGACTGGAAGATATCCA
ATTCATACCGGAATGTATCACAGTGTTATCCGACCAGAAGAACCTTGGGG
TCTTTCTTTGGATGAGAAGATGTTGCCACAATATTTGAAAGAACAAGGAT
ACACGACGCATATGGTTGGAAAGTGGCATCTCGGATACTTTGCCAAAGAA
TACACACCAACATACAGAGGCTTCGATACATTTTATGGATATTACAATGG
AGCTGAGGATTATTTTTACCACAACAGATCTGGCTATCATTTCCCTCAAT
ACAGCGGTGTAGATCTTCACCATGCAGTCCATGAGCAGATGACGCATGAT
TGGTTTCAAGACGGACATTACAGTGGAGATCTGTTCACCTCCAAAGCTAT
CGATATCATTCAAGACCATCCAACTACAGATCCATTGTTTCTTTACTTAC
CATTCCAAAATGTCCACGATCCTTGGGACGCACCAAAAGAATGGGTAGAT
AAATtctcaaacaaaattgaagatgAACAACGGAGAACTTTTGCAGCCAT
GGTTGGGGCCTTAGATGAAGCTATTGGCAAAATTTACGAAGCTTTGGACG
AGAAAAATATGCTAGATAATTCCATTATTATTTTCACATCTGATAACGGT
GGCATCCCTACAGATGGTCATTCAAGTAATTTTCCACTGCGAGGGCAAAA
ATGGAATGCTTACGAAGGTGGCGTTCGAGTGCCAGCATTTATCAACAGTC
CACTTTTGAAAAGATCAGGTGTTACATCAATGCAAATGATGCATGTTACT
GATTGGTTACCAACTATCGTCAACCTTGCTCAagggaaaatcacaaaaga
aattgatggttttgatcaatggaagacattgcaaagtGATGTTGAATCAC
CAAGGAAAGAAATCCTGTTGAATATTGACGATATTTTCAACCAAGAGGCT
CTTATAGTTGGAGAATGGAAGATTTTAACAGATTtTGTACATCGTTCTAC
TCGGAAGAAGGATACAATTGATCATGGATATCAAGATGGATGGATCAAAG
CTCCAGGGCACAATTCAACGGGAAAGGCTACTTCACCTGTCAATTGTGGT
TCAAAACCTGAAAAAGTAACACATTGCATCGAAACACATTGTCTATTCAA
TCTACAAAACGATCCTTGTGAATATAACGATGTTTCAAGTCAATATCCTG
AAATTTatcaacaaatgaaaaacaaacttGAAGATTATAAAAAGGGAATG
GTGCAAAGTCGAAAACAACCTGGAGACAAAATGTCGGATCCTCAATTGAA
TGGAGGTTTTTGGGGACCATGGAAAGAATTGTAATTTGGATTTGACGGCT
GTTGAGATTTTCTATAACAACACTATATTCGCATCACAACACAGGGCCCA
CCCTcactttttgcaaagtaaaaTTTTTGTTGCGCCTCCTTATATTcatt
cccccccccccgtttcAAATTCAAGGCGTGGGTCCTGCACACCAATAGAC
TAGAGAAACAATCTATATACATTAATATTTACGATAGAAGCTGTTTccca
ttttacaattttcgtacacatttttatataccttcatatagaattttttt
aatattttggtacAAATAAATTCAATCATTCAATGATGAAGCGAC
Run BLAST on NCBI

transcript from alignment at sc0000091:54398..62633-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009236 ID=TCONS_00009236|Name=TCONS_00009236|organism=Clytia hemisphaerica|type=transcript|length=8236bp|location=Sequence derived from alignment at sc0000091:54398..62633- (Clytia hemisphaerica)
CGCAGTATTTATATTTTTTGTAGAAAGCTTAGCATAAACTTTTTACGATG TATTATTTCTTTTACTTGCTTTTATTTTGTATTGTTGGATATGCTTTGGT GAAAAGTGAGCAGCCTCCAAACGTTGTTCTTATTGTAGCTGATGATTTGG TAAGTACTTTCATTTACTGGTTTTTAATTTGATTCTCAGATTTTCAAATT TATATTGAAATGTTTACAATTTCTTTTCCAGGGTTGGACAGATGTTAGTT TCCATGGCTGCGATCAAATCAAAACACCGAATATTGATAAATTGGCAAAA GAAGGAATTATTTTGAATAATTATTATGTGCAACCAATTTGTACTCCAAC GAGAAGTGCTCTGATGACTGGGAGATATCCTATACATACTGGTTAGTCTT TTTCTCGTGCTTCCAGGGCCCGCGCCACCGGGGGACCAGGAGTGCCATGG CCCCCACTTTTGCAAAGTAAAAATTTTTGGTTGCGCCTCCTTAAACTCTT TATTTATTGCCCCCCTCACTTTCAATTTCATGGCGTGGGCCCTGGCTTCG CCTTTAACGATCATGGCCATTTTGTCCCTATTTTTTAATATATTTCAAAC AATATATTCTTTTCTTTGAAGGTATGCAGCATGGTGTCCTTCTCGCTTCT GAACCTTGGGGTCTCTCTTTGGATGAGAAAACCCTTCCACAGTATTTGAA AGAAATGGGATATGCTACACACGCCATTGGAAAAGTAAGGCTTTCTGTAA CCTTGTTCCATCTTTTTCGAGTACTTTTTTGTATTTCGTTAATGCTTTAA AGGAATAACCAGCTACTTTCGTTTTCAGATATGTCATGGTGTACCTAATT CTGTAGAGTAATTTCTCCTACGTTATAATTATAAGATATAACTAAAATAG AATTAGGGACTTTGGCTTGAAAAGGAGACGAATTAACTTGTATCTACCCC AAAAGGTTATTTGAAGCCAAAATTTTGATGATATTTTTTAATTGCAACAT TTTCGAAGTATATTGTAAGTGAGTTTTCAGAAATTACTTTATGGCCGATC TGAAAATTAAATGTTGTTCGTTATCCCTTAACATACATTTTCTTTCTTTT TTTTCCTTGTAGTGGCATCTTGGTATGTTTGCCAAAGAATACACACCAAC ATACAGAGGCTTCGATACATTTTATGGATACTACAATGGAGCTGAGGATT ACTACTATCATAATGTGTCGGATATGCACTTTCCTCAATATAGCGGATTG GATTTAAGGAAAGATTCAAATGGTCAAAGCCAGGTTAGATCGCTGATTGT TTGGAATAAAAATTACGTTAATACACCTCTGTCTCTGCGTAGATTTTTCT CATGGACATTTTTAACACCATTCCTGGTAGAAGTTTTTTACGTTTTATCC GCCATTATGGAAGCCATCGTTCGAATCTGTACAGGCGATCCCTTACGCAA TTCGAACGTTTGCTTCCATAATGACGGAAATTGCTTACGGAAATTTAGTA ACGTTTGCCAACCACCTTACCCACTCTAAGCTTTTCAATAGATTATTTTT ATTTCTATTTTCTCAAACAAAGTTGATGCTTATTTTCTATTTCTTTTCAG CCAGTTTGGACTCAAAGCGGAAATTATAGCAGCTTTGTGTTTGCAGAAGA AGCTGTTAATGTGATTTCAAGCCAATCAAAAGAACAACCTTTGTTTTTAT ACCTTCCCTTCCAAAATGTTCATTTCCCATTTGAAGCACCTCAAGAATGG ATCGATAAATTTTCTTTCATTGAAGATGAAAAGAGAAGAACGTTTGCTGC AATGGTCGCTCTTTTAGATGATGCAGTAAGAAAAGTAAGGCTCTTTTTAC ACTTTGAGCCTGATAGTTTTGTTTGTATTGAGACCATGGGTATGATGAAG CCAAATTATGTAGTCATAAAAGGTACATGTAGATTATAGTAGTCGTTCAT CAATCTTAATTTTATGTGANTACCATATGTTGATGTAGATTATAGTAGTC GTTCATCAATCTTAATTTTATGTGATTGGCCCTCTGAACCTACTACTTCT TTGATCTAGATCTGATCCTTGATAGTTGATATCTAACAATTTAAGGCGTA GGCGTAGTGATTATCATCCTCCTGGGAGGCGCGAGTTCGTTACCCACCGT GTCACTACGATTCACTTAGCAAGTAAATATATATCTTCGCCCGGGAAGAC CTATGCAATGCGAGGGGAATCGGGTACCATTACTCAGATACAAGAGTGTG GGTAGATTAGACTGGCATTGTGACAAGCCGAGGCACTTCTAAGGTTCGAC CTCGCGTAAGCATCACTCTCCCGGTGTCGTTCCGTAATTCCTACTCCTTC GGGAGTAGGACCCATCCCGAATGCGTTCGGAGGGTCTACTCTCGGGTACC TAATAGCCGGGGGGATTGGAATAAGCGGGGGAATTGGAAAATATCTCGAA ACTTAATAAGCGGGGGGGGGGTGGAATAAAAATGTCTTGGGTGGAGAATT TTTGAAAAGGAGGCTAACACAGCATAATTAGGACAAAAGAGGGGAACTTT CAAAAACATTTTCCCAAAAATTAATAAGCGGGGGGGTTGTAATAAGAATG TTCTGGGTGGAAAATTTTCGAAAAATTAATTAGCGGGGGGGGGGCCGGCT ATTAGGTACCCAAGAGTACTTTCTATCATTATATCTNTACTTCTAAGGTT CGACCTCGCGTTAGCATCACTCTCCCGGTGTCGTTCGAGTGTCATGGTAT ACGTCATGGCTTTGCAGCTCGCGTATGACAAGTCGCAGTGTCTGTCAGCA CCGTAATTCCTACTCCTTCGGGAGTAGGACCCATCCCGAATGCGTTCGGA GGGTCTACTTTCTATCATTATATCTCATATCTTTACCTAACTATTTTTCT TCAATCTTAAATCTCTTATCTAGATTTATGAAGCTTTGGAAGCTACAGAT ATGGTTGACAATACTCTGATTATCTTCACTTCTGACAACGGAGGGAGATC AAGCCAGGGATATGCCAGCAATTTCCCTTTGAGGGGAGAAAAAGGAAAGA TCTTTGAAGGTAGAGAGCATATATAGTATTTTTTCTCGTATATGTCCGTT TGAAATTTGGTAAATCCCCTAATACCAATTTACAATTTTGTTTTTTGATA GGTGGTGTCCGAGTACCAGCATTTATCAACAGTCCACTTTTGAAAAGATC AGGTGTTACATCAATGCAAATGATGCATGTTACTGATTGGTTGCCAACTA TCGTCAACCTTGCTCAAGGGAAAATCACAAAAGAAATTGATGGTTTTGAT CAATGGAAGACATTGCAAAGTGACGTTGAATCGCCAAGAAAAGAAATCTT GTTGAATATCGATACTGAAGTCGGAGAAGAAGGTCTGATTTTCGATCAGT GGAAAATTATCAAAGAAAGTAAGACTTTTCTCATTGTTATGTTTGTTAGT AGTAATTTAGCGACTGTAGTGCAGTGGTAGAGTATCCAACTACGGTGCGC AAGGTCGTGGGTTCAATCCCGAGCCGGGTCATACCAAAGATTCCCAAAAT GGTACTTGATGCCTCTCTACTTGATGCTCAGCAATTAAGAGAAGGATCAA GGGTAAGTGGAGCAATCCAGGGAGAAAGAATGGCGCCCTCCCCTACCTTC GGGTAGATAGCTATCGAAAGATGAGCCTTCGGGTCACTTCCGACTCCGGT CGTAGACTTAGTAATAATGGGTATTCGAATTAATTCTATTTGCATTCTGT ATTTTATTATAACCTAGGAATTGTTGTCGCCTTTGTTTTATATAAATCCA GAGTAATATGTATTTGACGACATCAATTCATAGTCACAACTGCAGATGGT TGGATGAAACCTGCCGGATACAACGCCAGTGGAAAAGCAACAACGGTTGT CGATTGTGGTCCAAAACCTGACAAAATGACACATTGCAATGAAACACATT GTCTGTTCAATCTACAAAACGACCCTTGTGAATATAATGATGTGTCAAGT CAATACCCTGAAATTTATCAACAAATGAAAAACAAACTTGAAGATTACAA AAAGGGAATGGTGCCACCTGTCAATCAACCTGGGGATAAAAATTGCGATC CAGATTTATTCGGTGGCGTATGGACTCCATGGATTGAATTATAGCCTAGC TTAACTTTTATTATTGATCTTGTGCTTGCAAATCTTTTATGCTGGGCATT CTTTGTGCAATTTTTCTTCAATTATGTACATCATCATTGTTAGCATTTTT TGCTTTCTTTTTCTAACAGCAATTACGTAATTTCTAGTTGGATTAAACCG TTATACTACAGTGGGAACCGAACTCGGACCTCCCAGACGAGAGTCAAGAG CGATGACCACCATACCACTACGCCTGATTTGATATAGTGGCAGATCAATT TTTCACGAAGATTTATTTATTGAAAGTAATGATAAGTAAATACCATGGTA GAAAAGAACTTGCTGAGTTTTATTTTCTTTTATAGTGCCATTGCCTTTAA AAACTAAAATAAATTTACTATAATTTGATTTCATCGACGACCATGGAGGT GTTTTCGTTGATGTTGACTCTGCTGTTGGTATCCTGTCTTCAATTCGCTT TTGTGGAAAGCGAGCAGCCACCAAATGTGGTTTTCATTTTGGCTGATGAT TTGGTAAGCTTTTCTAAGTTTTTTGTTGAAAGTTAGTTCAGCCTTTACTG TTTTATTGATCTTTGAACTTTTGAAATCTTGATTTCTAGGTAGTAACTTT TCAATCTTTTTATATCAGGGATGGAATGATGTAGGATTTCATGGCTCTGA TCAAATTGAGACACCAAATATTGATAAACTGGCAAAAGAAGGAATTATTT TGAATAATTATTATGTGCAACCAATCTGCTGTCCGACGAGAAGTGCTCTG ATGACTGGAAGATATCCAATTCATACCGGTGAGTTGAATATTTTAACTTT TCTCATGAGAGTACTATAAAAAAATCGAAATTGTTGTTAACGATTTTTTA AATGCAGTCTAATAACGTCTAATTCGACGTTATTCTATATGATACACTCC ATTATTTGATAATATTGAAAGTAACCGTCAGCAAGAAACTCTCGTAAATG ATACGCTATTCTATTCGATATACTCCCTTATTCGACGGAAATTCAATTCT TCTTGAACATCGAGTTAGAGAAGGTCAACTTTACTTGTTTTCCTTTCTAT CAGGAATGTATCACAGTGTTATCCGACCAGAAGAACCTTGGGGTCTTTCT TTGGATGAGAAGATGTTGCCACAATATTTGAAAGAACAAGGATACACGAC GCATATGGTTGGAAAGGTGAGTTTTCTGTTTTTATTGTGATCTTTAAAAT GTCTATATAATAAGAAATAGTATACAGTGTTGACGCTTTCAATTCCCTTC AAGGGCAATCGGATTTTCATTGAATAAAGAAGTTTATCAAATAGTATAGT GTCGTTTATGAGAGTTTCTCGTTGATTGGTGCCTATTCAACATTGTGGAA TAATATGGAGCGTATCGGATAGTAGAACATGGATTTACAGAGCGTCAATT TAATAATCTCTTTCCTTGCAGTGGCATCTCGGATACTTTGCCAAAGAATA CACACCAACATACAGAGGCTTCGATACATTTTATGGATATTACAATGGAG CTGAGGATTATTTTTACCACAACAGATCTGGCTATCATTTCCCTCAATAC AGCGGTGTAGATCTTCACCATGCAGTCCATGAGCAGATGACGGTACAATA GTTTATTAGACAATTATGTTTCCAAGTCGGTGTTTTTTACACTTTCGCCA AAAACGTGACGAGATGGTACTTAACCGTCACAAACCGTACCTACGAAGAA GAGTTTGATGCAGGTTAGTCAGAATGTAGACTACTAAAAAATTAATTGTC GTTTTTATAGCATGATTGGTTTCAAGACGGACATTACAGTGGAGATCTGT TCACCTCCAAAGCTATCGATATCATTCAAGACCATCCAACTACAGATCCA TTGTTTCTTTACTTACCATTCCAAAATGTCCACGATCCTTGGGACGCACC AAAAGAATGGGTAGATAAATTCTCAAACAAAATTGAAGATGAACAACGGA GAACTTTTGCAGCCATGGTTGGGGCCTTAGATGAAGCTATTGGCAAAGTA AGTGTTTCTCAATTTCATAATTAACATAATTCATTGTTTTGATAGTAAAA AAATTCAACTTAACTTAACATTAACTACACGCTTTTCTTATTAGAAAAAG TAAATCTTTGGTATGGTAAGACCCGGCATTTTCTATGATTTTTAGGCCTG AATTATTCAGGCTTTCATCAATACTTCTTAAATATTCTTAGCACTCACTG TAGTGACTTGCTTATTGAAATAAAATGAACTTTTTTAGTCATTTTTGAAA TCTGAGGCTGGAATTATTCTCAATTTGTTCCCAGGTTTTTGCAAAACTGG GACTAATGTTGTTATAAAAAAAGCGTGTACTGATTCAATGTCAATCAATA TAGGAGAGGTTTAAAGGTTTTGTTTTTACGTAAGTGTTCCCGTTTCATAT CAGACAGATATTTGATACGAGAACAGTGTCTGCCTATTGTTATATTATGC TGATATAAACAAAAAAATGTTTATGTTTTCCTCTTTCTGACCAATCTTGC TCCACATCCGTGTCAATCTAATGTGAAAAGCGTTTGAATTAAAATTGATG AGTAAGCAAACGATATCACTCTTGTTTAAAAACAAAGCCTTTAAGCATAT GTTGTGTCCTTTTTCAGATTTACGAAGCNATCTTGTTTAAAAACAAAACC TTTAAGCATATGTTGTGTCCTTTTCCAGATTTACGAAGCTTTGGACGAGA AAAATATGCTAGATAATTCCATTATTATTTTCACATCTGATAACGGTGGC ATCCCTACAGATGGTCATTCAAGTAATTTTCCACTGCGAGGGCAAAAATG GAATGCTTACGAAGGTATAGCAAAGAATTACCTTCATTTATGAAAATCAA TTTCATGTATCTGAAAAAAGGCAATAAAATTTCAATCGAAACTAACAGCT CAAACAGAAAATTATCAAAAATCTGCCTTAACTCAAAACACAAAAAAACT AGAAAATAAAGCTTTGGAAGTTCTCAAGATCAATTTGAAATGTGCTATCT GAAGGACTTTTGACAATAATGATAACCTTTTAGTCAATGTTTTCACAGGT GGCGTTCGAGTGCCAGCATTTATCAACAGTCCACTTTTGAAAAGATCAGG TGTTACATCAATGCAAATGATGCATGTTACTGATTGGTTACCAACTATCG TCAACCTTGCTCAAGGGAAAATCACAAAAGAAATTGATGGTTTTGATCAA TGGAAGACATTGCAAAGTGATGTTGAATCACCAAGGAAAGAAATCCTGTT GAATATTGACGATATTTTCAACCAAGAGGCTCTTATAGTTGGAGAATGGA AGATTTTAACAGATTGTAAGTTTTAGCAGCTTTAAATAAATGTTTTTAAT TTTCAACAAAATATCTTTGGATGCCGTGCGCTTCTATACTTAAAATCTAA TCAGTCTTTTAAATTTTCATTTCAGTTGTACATCGTTCTACTCGGAAGAA GGATACAATTGATCATGGATATCAAGATGGATGGATCAAAGCTCCAGGGC ACAATTCAACGGGAAAGGCTACTTCACCTGTCAATTGTGGTTCAAAACCT GAAAAAGTAACACATTGCATCGAAACACATTGTCTATTCAATCTACAAAA CGATCCTTGTGAATATAACGATGTTTCAAGTCAATATCCTGAAATTTATC AACAAATGAAAAACAAACTTGAAGATTATAAAAAGGGAATGGTGCAAAGT CGAAAACAACCTGGAGACAAAATGTCGGATCCTCAATTGAATGGAGGTTT TTGGGGACCATGGAAAGAATTGTAATTTGGATTTGACGGCTGTTGAGATT TTCTATAACAACACTATATTCGCATCACAACACAGGGCCCACCCTCACTT TTTGCAAAGTAAAATTTTTGTTGCGCCTCCTTATATTCATTCCCCCCCCC CCGTTTCAAATTCAAGGCGTGGGTCCTGCACACCAATAGACTAGAGAAAC AATCTATATACATTAATATTTACGATAGAAGCTGTTTCCCATTTTACAAT TTTCGTACACATTTTTATATACCTTCATATAGAATTTTTTTAATATTTTG GTACAAATAAATTCAATCATTCAATGATGAAGCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005177XLOC_005177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009236-exon-sc0000091-1575043694:62485..62633TCONS_00009236-exon-sc0000091-1575043694:62485..62633Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:62243..62402TCONS_00009236-exon-sc0000091-1575043694:62243..62402Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:61900..62012TCONS_00009236-exon-sc0000091-1575043694:61900..62012Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:61351..61521TCONS_00009236-exon-sc0000091-1575043694:61351..61521Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:60800..61033TCONS_00009236-exon-sc0000091-1575043694:60800..61033Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:59575..59710TCONS_00009236-exon-sc0000091-1575043694:59575..59710Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:59216..59482TCONS_00009236-exon-sc0000091-1575043694:59216..59482Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:57981..58800TCONS_00009236-exon-sc0000091-1575043694:57981..58800Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:57706..57865TCONS_00009236-exon-sc0000091-1575043694:57706..57865Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:57318..57430TCONS_00009236-exon-sc0000091-1575043694:57318..57430Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:56892..57062TCONS_00009236-exon-sc0000091-1575043694:56892..57062Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:56487..56723TCONS_00009236-exon-sc0000091-1575043694:56487..56723Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:55670..55805TCONS_00009236-exon-sc0000091-1575043694:55670..55805Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:55169..55435TCONS_00009236-exon-sc0000091-1575043694:55169..55435Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1575043694:54398..55058TCONS_00009236-exon-sc0000091-1575043694:54398..55058Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:62485..62633TCONS_00009236-exon-sc0000091-1510915933:62485..62633Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:62243..62402TCONS_00009236-exon-sc0000091-1510915933:62243..62402Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:61900..62012TCONS_00009236-exon-sc0000091-1510915933:61900..62012Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:61351..61521TCONS_00009236-exon-sc0000091-1510915933:61351..61521Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:60800..61033TCONS_00009236-exon-sc0000091-1510915933:60800..61033Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:59575..59710TCONS_00009236-exon-sc0000091-1510915933:59575..59710Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:59216..59482TCONS_00009236-exon-sc0000091-1510915933:59216..59482Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:57981..58800TCONS_00009236-exon-sc0000091-1510915933:57981..58800Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:57706..57865TCONS_00009236-exon-sc0000091-1510915933:57706..57865Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:57318..57430TCONS_00009236-exon-sc0000091-1510915933:57318..57430Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:56892..57062TCONS_00009236-exon-sc0000091-1510915933:56892..57062Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:56487..56723TCONS_00009236-exon-sc0000091-1510915933:56487..56723Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:55670..55805TCONS_00009236-exon-sc0000091-1510915933:55670..55805Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:55169..55435TCONS_00009236-exon-sc0000091-1510915933:55169..55435Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1510915933:54398..55058TCONS_00009236-exon-sc0000091-1510915933:54398..55058Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:62485..62633TCONS_00009236-exon-sc0000091-1491911889:62485..62633Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:62243..62402TCONS_00009236-exon-sc0000091-1491911889:62243..62402Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:61900..62012TCONS_00009236-exon-sc0000091-1491911889:61900..62012Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:61351..61521TCONS_00009236-exon-sc0000091-1491911889:61351..61521Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:60800..61033TCONS_00009236-exon-sc0000091-1491911889:60800..61033Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:59575..59710TCONS_00009236-exon-sc0000091-1491911889:59575..59710Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:59216..59482TCONS_00009236-exon-sc0000091-1491911889:59216..59482Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:57981..58800TCONS_00009236-exon-sc0000091-1491911889:57981..58800Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:57706..57865TCONS_00009236-exon-sc0000091-1491911889:57706..57865Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:57318..57430TCONS_00009236-exon-sc0000091-1491911889:57318..57430Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:56892..57062TCONS_00009236-exon-sc0000091-1491911889:56892..57062Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:56487..56723TCONS_00009236-exon-sc0000091-1491911889:56487..56723Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:55670..55805TCONS_00009236-exon-sc0000091-1491911889:55670..55805Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:55169..55435TCONS_00009236-exon-sc0000091-1491911889:55169..55435Clytia hemisphaericaexon
TCONS_00009236-exon-sc0000091-1491911889:54398..55058TCONS_00009236-exon-sc0000091-1491911889:54398..55058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:54398..62633 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.653945 1.15652 1.76866 1.94772 1.46258 0.851689 0.202753 1.35143 0.00727996 1.11996 0.000877014 1.76637e-05 0.265646 0 0.0458314 0.0319647 0 0 0 0 1.57061 2.48895 0 0 0 1.22239e-08
Blast
BLAST of TCONS_00009236 vs. Swiss-Prot (Human)
Match: ARSJ (Arylsulfatase J OS=Homo sapiens GN=ARSJ PE=2 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 3.260e-121
Identity = 217/510 (42.55%), Postives = 304/510 (59.61%), Query Frame = 2
Query: 2006 SEQPPNVVFILADDLGWNDVGFHGSDQIETPNIDKLAKEGIILNNYYVQPICCPTRSALMTGRYPIHTGMYHSVIRPEEPWGLSLDEKMLPQYLKEQGYTTHMVGKWHLGYFAKEYTPTYRGFDTFYGYYNGAEDYFYHNRSGYHFPQYSGVDLHHAVHEQMTHDWFQDGHYSGDLFTSKAIDIIQDHPTTDPLFLYLPFQNVHDPWDAPKEWVDKFSNKIEDEQRRTFAAMVGALDEAIGKIYEALDEKNMLDNSIIIFTSDNGGIPTDGHSSNFPLRGQKWNAYEGGVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGKITKEI--DGFDQWKTLQSDVESPRKEILLNIDDIFN------------------QEALIVGEWKILTDFVHRSTRKKDTIDHGYQDGWIKAPGHNSTGKATSPVNCGSKPEKVTHCI-ETHCLFNLQNDPCEYNDVSSQYPEIYQQMKNKLEDYKKGMVQSRKQPGDKMSDPQLNGGFWGPW 3472
            S   P+++FILADD G+ DVG+HGS+ I+TP +DKLA EG+ L NYYVQPIC P+RS  +TG+Y IHTG+ HS+IRP +P  L LD   LPQ LKE GY+THMVGKWHLG++ KE  PT RGFDTF+G   G+ DY+ H +     P   G DL+   +    +D   +G YS  ++T +   I+  H  T P+FLY+ +Q VH P  AP  + + + + I   +RR +AAM+  LDEAI  +  AL      +NSIII++SDNGG PT G  SN+PLRG K   +EGG+R   F++SPLLK  G    +++H+TDW PT+++LA+G+I ++I  DG+D W+T+   + SPR +IL NID I+                   Q A+ V  WK+LT             + GY D W+     ++ G            E++T    ++  LFN+  DP E  D+S++YP I +++  +L  + K  V  R  P D  S+P+LNGG WGPW
Sbjct:   72 STSQPHLIFILADDQGFRDVGYHGSE-IKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKECMPTRRGFDTFFGSLLGSGDYYTHYKC--DSPGMCGYDLYENDNAAWDYD---NGIYSTQMYTQRVQQILASHNPTKPIFLYIAYQAVHSPLQAPGRYFEHYRSIININRRR-YAAMLSCLDEAINNVTLALKTYGFYNNSIIIYSSDNGGQPTAG-GSNWPLRGSKGTYWEGGIRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILHNIDPIYTKAKNGSWAAGYGIWNTAIQSAIRVQHWKLLTG------------NPGYSD-WVPPQSFSNLGPNR------WHNERITLSTGKSVWLFNITADPYERVDLSNRYPGIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPW 554          

HSP 2 Score: 361.688 bits (927), Expect = 4.838e-110
Identity = 196/502 (39.04%), Postives = 298/502 (59.36%), Query Frame = 3
Query:  105 SEQPPNVVLIVADDLGWTDVSFHGCDQIKTPNIDKLAKEGIILNNYYVQPICTPTRSALMTGRYPIHTGMQHGVLLASEPWGLSLDEKTLPQYLKEMGYATHAIGKWHLGMFAKEYTPTYRGFDTFXXXXXXXXXXXXHNVSDMHFPQYSGLDLRKDSNGQSQPVWT-QSGNYSSFVFAEEAVNVISSQSKEQPLFLYLPFQNVHFPFEAPQEWIDKFSFIEDEKRRTFAAMVALLDDAVRKIYEALEATDMVDNTLIIFTSDNGGRSSQGYASNFPLRGEKGKIFEGGVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGKITKEI--DGFDQWKTLQSDVESPRKEILLNID------------------TEVGEEGLIFDQWKIIKEITTADGWMKPAGYNASGKATTVVDCGPKP---DKMT-HCNETHCLFNLQNDPCEYNDVSSQYPEIYQQMKNKLEDYKKGMVPPVNQPGDKNCDPDLFGGVWTPWIE 1535
            S   P+++ I+ADD G+ DV +HG  +IKTP +DKLA EG+ L NYYVQPICTP+RS  +TG+Y IHTG+QH ++  ++P  L LD  TLPQ LKE+GY+TH +GKWHLG + KE  PT RGFDTF+G   G+ DYY H   D   P   G DL ++ N      W   +G YS+ ++ +    +++S +  +P+FLY+ +Q VH P +AP  + + +  I +  RR +AAM++ LD+A+  +  AL+     +N++II++SDNGG+ + G  SN+PLRG KG  +EGG+R   F++SPLLK  G    +++H+TDW PT+++LA+G+I ++I  DG+D W+T+   + SPR +IL NID                      +  +    WK++        W+ P  ++         + GP     +++T    ++  LFN+  DP E  D+S++YP I +++  +L  + K  VP    P D   +P L GGVW PW +
Sbjct:   72 STSQPHLIFILADDQGFRDVGYHG-SEIKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKECMPTRRGFDTFFGSLLGSGDYYTHYKCDS--PGMCGYDLYENDNA----AWDYDNGIYSTQMYTQRVQQILASHNPTKPIFLYIAYQAVHSPLQAPGRYFEHYRSIININRRRYAAMLSCLDEAINNVTLALKTYGFYNNSIIIYSSDNGGQPTAG-GSNWPLRGSKGTYWEGGIRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILHNIDPIYTKAKNGSWAAGYGIWNTAIQSAIRVQHWKLLTGNPGYSDWVPPQSFS---------NLGPNRWHNERITLSTGKSVWLFNITADPYERVDLSNRYPGIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPWYK 556          
The following BLAST results are available for this feature:
BLAST of TCONS_00009236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARSJ3.260e-12142.55Arylsulfatase J OS=Homo sapiens GN=ARSJ PE=2 SV=1[more]
back to top