TCONS_00009233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009233
Unique NameTCONS_00009233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009233 ID=TCONS_00009233|Name=TCONS_00009233|organism=Clytia hemisphaerica|type=transcript|length=318bp
CACCTTGGCTACTTTGCCAAAGAATACACACCGACCTATCGAGGTTTCGA
TACATTTTATGGTTATTACAATGGAGCTGAGGATTATTTTTACCACAACA
GATCTGGCTATCATTTCCCAAAATTTCATGGTCTTGATCTTCACCATGAC
GTAGAAGGAGATCAACAGCCAGTGCGAACACAGGACGGTAATTACAGCAC
CTACATGTATTCGGATGAAGCAATCACTACAATCAACCAACATCCATCAG
AAAAACCTCTTTTCCTGTACCTTCCTTTCCAAAATGTCCATGGCCCTCTG
ATGGCACCTCAAGAAact
Run BLAST on NCBI

transcript from alignment at sc0000091:52402..53013-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009233 ID=TCONS_00009233|Name=TCONS_00009233|organism=Clytia hemisphaerica|type=transcript|length=612bp|location=Sequence derived from alignment at sc0000091:52402..53013- (Clytia hemisphaerica)
CACCTTGGCTACTTTGCCAAAGAATACACACCGACCTATCGAGGTTTCGA
TACATTTTATGGTTATTACAATGGAGCTGAGGATTATTTTTACCACAACA
GATCTGGCTATCATTTCCCAAAATTTCATGGTCTTGATCTTCACCATGAC
GTAGAAGGAGATCAACAGGTAATCAGTCAATAATTAATAACCATCAGATA
GTGATGAATTCTTGAAAATTGCTGAAGGAGACAAAACCATCAGTCAAAAT
TAATCATAAAAATGTACAACCTAACGTTTGAGTTACCAGTGCCGAAAATG
TCGAAATAACTTTCAAAATATTTTTGTCATACAGCCCTGATAAATACTAA
CTCAATCTCGTTTCAAATAGCTTTTGGCCAGATTATTTCATGGCGTATTT
AACATTTTAGCGTAATTCTCCAACTCTAGTTTCATTTTTCATTTTGCCGG
TCTATTATTTAGCCAGTGCGAACACAGGACGGTAATTACAGCACCTACAT
GTATTCGGATGAAGCAATCACTACAATCAACCAACATCCATCAGAAAAAC
CTCTTTTCCTGTACCTTCCTTTCCAAAATGTCCATGGCCCTCTGATGGCA
CCTCAAGAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005177XLOC_005177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009233-exon-sc0000091-1575043694:52846..53013TCONS_00009233-exon-sc0000091-1575043694:52846..53013Clytia hemisphaericaexon
TCONS_00009233-exon-sc0000091-1575043694:52402..52551TCONS_00009233-exon-sc0000091-1575043694:52402..52551Clytia hemisphaericaexon
TCONS_00009233-exon-sc0000091-1510915933:52846..53013TCONS_00009233-exon-sc0000091-1510915933:52846..53013Clytia hemisphaericaexon
TCONS_00009233-exon-sc0000091-1510915933:52402..52551TCONS_00009233-exon-sc0000091-1510915933:52402..52551Clytia hemisphaericaexon
TCONS_00009233-exon-sc0000091-1491911889:52846..53013TCONS_00009233-exon-sc0000091-1491911889:52846..53013Clytia hemisphaericaexon
TCONS_00009233-exon-sc0000091-1491911889:52402..52551TCONS_00009233-exon-sc0000091-1491911889:52402..52551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:52402..53013 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.5013	19.8687	15.2719	15.1364	5.9531	3.41289	8.29691	8.22561	6.39805	4.86561	9.37528	11.8429	13.3989	14.0462	12.6506	22.4932	10.8362	11.9837	15.469	7.551	11.7039	16.1876	18.8639	16.6693	24.8291	24.5658	7.46442	6.03274	43.8972	27.7479
Blast
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BLAST of TCONS_00009233 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.275e-20
Identity = 44/105 (41.90%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:    1 HLGYFAKEYTPTYRGFDTFYGYYNGAEDYFYHNRSGYHFPKFHGLDLHHDVEGDQQPVRTQDGNYSTYMYSDEAITTINQHPSEKPLFLYLPFQNVHGPLMAPQE 315
            HLG + KE  PT RGFDT++GY  G+EDY+ H R        +      D    ++        YST +++  AI  I  HP EKPLFLYL  Q+VH PL  P+E
Sbjct:  147 HLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHERCTL-IDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIALITNHPPEKPLFLYLALQSVHEPLQVPEE 250
The following BLAST results are available for this feature:
BLAST of TCONS_00009233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARSB5.275e-2041.90Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1[more]
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