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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009230 ID=TCONS_00009230|Name=TCONS_00009230|organism=Clytia hemisphaerica|type=transcript|length=2721bpRun BLAST on NCBI transcript from alignment at sc0000091:45031..61474- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009230 ID=TCONS_00009230|Name=TCONS_00009230|organism=Clytia hemisphaerica|type=transcript|length=16444bp|location=Sequence derived from alignment at sc0000091:45031..61474- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009230 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1) HSP 1 Score: 363.614 bits (932), Expect = 3.406e-114 Identity = 181/369 (49.05%), Postives = 251/369 (68.02%), Query Frame = 1
Query: 1537 SEQPPNVVFILADDLGWNDVGFHGSDQIETPNIDKLAKEGIILNNYYVQPICCPTRSALMTGRYPIHTGMYHSVIRPEEPWGLSLDEKMLPQYLKEQGYTTHMVGKWHLGYFAKEYTPTYRGFDTFYGYYNGAEDYFYHNRSGYHFPQYSGVDLHHAVHEQMTHDWFQDGH---------YSGDLFTSKAIDIIQDHPTTDPLFLYLPFQNVHDPWDAPKEWVDKFSNKIEDEQRRTFAAMVGALDEAIGKIYEALDEKNMLDNSIIIFTSDNGGIPTDGHSSNFPLRGQKWNAYEGGVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGKI--TKEIDGFDQWKTLQDDVKSPRNEILLNID 2610
+ +PP++VF+LADDLGWNDVGFHGS +I TP++D LA G++L+NYY QP+C P+RS L+TGRY I TG+ H +I P +P + LDEK+LPQ LKE GYTTHMVGKWHLG + KE PT RGFDT++GY G+EDY+ H R L A++ F+DG YS ++FT +AI +I +HP PLFLYL Q+VH+P P+E++ + + I+D+ R +A MV +DEA+G + AL + +N++ IF++DNGG G +N+PLRG+KW+ +EGGVR F+ SPLLK+ GV + +++H++DWLPT+V LA+G TK +DGFD WKT+ + SPR E+L NID
Sbjct: 41 ASRPPHLVFLLADDLGWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLCTPSRSQLLTGRYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHER----------CTLIDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIALITNHPPEKPLFLYLALQSVHEPLQVPEEYLKPY-DFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQTLAG-GNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNID 396 HSP 2 Score: 216.853 bits (551), Expect = 1.291e-60 Identity = 123/338 (36.39%), Postives = 186/338 (55.03%), Query Frame = 2
Query: 149 YSSFVFAEEAVNVISSQSKEQPLFLYLPFQNVHFPFEAPQEWIDKFSFIEDEKRRTFAAMVALLDDAVRKIYEALEATDMVDNTLIIFTSDNGGRSSQGYASNFPLRGEKGKIFEGGVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGKI--TKEIDGFDQWKTLQSDVESPRKEILLNID------------------------------TEVGEEGLIFDQWKIIKEITTADGWMKPAG-YNASGKATTVVDCGPKPDKMTHCNETHCLFNLQNDPCEYNDVSSQYPEIYQQMKNKLEDYKKGMVPPVNQPGDKNCDPDLFGGVWTPWI 1063
YS+ +F + A+ +I++ E+PLFLYL Q+VH P + P+E++ + FI+D+ R +A MV+L+D+AV + AL+++ + +NT+ IF++DNGG++ G +N+PLRG K ++EGGVR F+ SPLLK+ GV + +++H++DWLPT+V LA+G TK +DGFD WKT+ SPR E+L NID T V + WK++ W P YN S P D T +T LF++ DP E +D+S +YP I ++ ++L+ Y K VP D CDP GVW PW+
Sbjct: 210 YSTNIFTKRAIALITNHPPEKPLFLYLALQSVHEPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQTLAG-GNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCPRNSMAPAKDDSSLPEYSAFNTSV-HAAIRHGNWKLLTGYPGCGYWFPPPSQYNVSEI--------PSSDPPT---KTLWLFDIDRDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDPKAT-GVWGPWM 533 The following BLAST results are available for this feature:
BLAST of TCONS_00009230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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